BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G10507.1

Length=505
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg489895 jgi|Araly1|489895|fgenesh2_kg.6__3029__AT4G10507.1         466    7e-131


> Ahg489895 jgi|Araly1|489895|fgenesh2_kg.6__3029__AT4G10507.1
Length=377

 Score =  466 bits (252),  Expect = 7e-131
 Identities = 302/326 (93%), Gaps = 4/326 (1%)
 Strand=Plus/Plus

Query  45   CTTTTCAAGTCGAGTTTGATTATAGAATCATGAATTCATTGTTCACTATGTTTGATTCCT  104
            ||||||||||| |||||||||||||||| |||| ||| ||||||| ||||||||||||||
Sbjct  13   CTTTTCAAGTCAAGTTTGATTATAGAATAATGAGTTCGTTGTTCAGTATGTTTGATTCCT  72

Query  105  TTTGTGCAGAGATTATGAGGAACAAATTTACATCTAAGTCA-CCTTCTCATGGATCATCT  163
            ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct  73   TTTGTGCAGAGATTATGAGGAACAAATTTACATCTAAGTCATCC-TCTCATGGATCATCT  131

Query  164  GCTTCTTCCTCTGGTGTTCAAGCCGTGTCGATTGAGAAGACACCAAAGAAGGTCCTGGTG  223
             |||||||||| ||||||||||||||||||||| |||||||| ||||||||||  |||||
Sbjct  132  ACTTCTTCCTCGGGTGTTCAAGCCGTGTCGATTAAGAAGACAACAAAGAAGGTTTTGGTG  191

Query  224  GAGAAAGTACTGAGGTTTGCGCCGGAGTTTGACGGGCTTCATTGCTTCGAAACCATAGTT  283
            ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  192  GAGAAAGAACTGAGGTTTGCGCCGGAGTTTGACGGGCTTCATTGCTTCGAAACCATAGTT  251

Query  284  CCTTCTTGATTATTCCACTACGATTTT-CCtttttttttttttttttGATAGATTTTGTC  342
            ||||||||||||||||| |||| |||| || ||||| ||| | ||| |||||||||||||
Sbjct  252  CCTTCTTGATTATTCCAATACGGTTTTTCCCTTTTTATTTATGTTT-GATAGATTTTGTC  310

Query  343  ATGAAATAGTTACGAAAGTGTTGCTT  368
            |||||||| ||||||| |||||||||
Sbjct  311  ATGAAATACTTACGAATGTGTTGCTT  336



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18352838309


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5