BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G10520.1
Length=2271
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489897 jgi|Araly1|489897|fgenesh2_kg.6__3031__AT4G10520.1 1929 0.0
> Ahg489897 jgi|Araly1|489897|fgenesh2_kg.6__3031__AT4G10520.1
Length=2214
Score = 1929 bits (1044), Expect = 0.0
Identities = 1230/1321 (93%), Gaps = 7/1321 (1%)
Strand=Plus/Plus
Query 951 TGCAGCTGGTAATGCTGGCCCCACGGCTCAGACCATTTCGAATGTAGCTCCTTGGGTCTT 1010
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 901 TGC-GCTGGTAATGCTGGTCCCACGGCTCAGACCATTTCGAATGTAGCTCCTTGGGTTTT 959
Query 1011 GACAGTGGCTGCAACCACTCAAGACCGTTCTTTTCCTACAGCCATAACACTTGGGAACAA 1070
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 960 GACAGTGGCTGCAACCACTCAAGACCGTTCCTTTCCTACAGCCATAACACTTGGGAACAA 1019
Query 1071 TATAACAATACTGGGTCAAGCAATATACGGCGGTCCAGAACTCGGTTTCGTTGGTCTTAC 1130
||||||||||||||||||||| || | | |||||||||||||||||| |||||||||||
Sbjct 1020 TATAACAATACTGGGTCAAGCCATCTTTGCCGGTCCAGAACTCGGTTTTGTTGGTCTTAC 1079
Query 1131 TTATCCAGAGAGTCCACTTTCAGGTGACTGCGAGAAGCTCTCTGCTAATCCCAACAGTAC 1190
||| || ||||| |||| ||||||||||||||||||||| |||||||||||||| |
Sbjct 1080 TTA-CC-CAGAGT----TTTCCGGTGACTGCGAGAAGCTCTCTTCTAATCCCAACAGTGC 1133
Query 1191 AATGGAAGGAAAAGTTGTGTTGTGTTTCGCAGCATCTACACCATCAAATGCTGCTATAGC 1250
|||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |
Sbjct 1134 AATGCAAGGAAAAGTTGTGTTGTGTTTCACAGCATCTAGACCATCAAATGCTGCTATAAC 1193
Query 1251 CGCAGTAATAAATGCTGGTGGTCTTGGGTTAATCATGGCAAAAAATCCGACCCACTCGCT 1310
| ||||| ||||| |||||||| ||| ||||||| |||| |||||||||||||| |||
Sbjct 1194 CACAGTACGCAATGCGGGTGGTCTCGGGGTAATCATTGCAAGAAATCCGACCCACTTGCT 1253
Query 1311 TACTCCAACTCGTAAGTTTCCCTGGGTTTCCATAGATTTCGAGCTAGGGACCGACATTTT 1370
||||||||||||||| ||||| | |||||| |||| |||||||| ||||||||||||||
Sbjct 1254 TACTCCAACTCGTAACTTTCCATATGTTTCCGTAGACTTCGAGCTCGGGACCGACATTTT 1313
Query 1371 GTTCTATATACGCTCCACAAGATCTCCCATTGTAAAGATACAGGCTTCAAAGACGCTTTT 1430
|| ||||||||||||||||||||||||||||||||| |||||||||||||| || |||||
Sbjct 1314 GTACTATATACGCTCCACAAGATCTCCCATTGTAAACATACAGGCTTCAAAAACACTTTT 1373
Query 1431 TGGACAATCCGTGTCGACAAAGGTAGCAACCTTCTCGTCAAGAGGACCTAATTCAGTTTC 1490
|||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||| ||
Sbjct 1374 TGGACAATCCGTGTCGACAAAGGTTGCAACTTTCTCATCAAGAGGACCTAATTCAGTCTC 1433
Query 1491 TCCGGCGATTCTTAAGCCGGATATAGCAGCACCTGGTGTGAACATACTAGCAGCTATTTC 1550
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1434 TCCAGCGATTCTTAAGCCGGATATAGCAGCACCTGGTGTGAACATACTAGCAGCTATTTC 1493
Query 1551 TCCAAATAGCTCTATAAATGATGGAGGTTTTGCTATGATGTCAGGGACATCAATGGCTAC 1610
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1494 TCCAAATAGTTCTATAAATGATGGAGGATTTGCTATGATGTCAGGGACATCAATGGCTAC 1553
Query 1611 TCCTGTTGTTTCAGGAGTTGTAGTGCTCCTCAAATCATTACATCCTGATTGGTCTCCTTC 1670
||||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 1554 TCCTGTTGTGTCAGGAGTTGTTGTACTCCTCAAATCATTACATCCTGATTGGTCTCCTTC 1613
Query 1671 TGCTATCAAATCAGCTATTGTTACCACAGCTTGGAGAACTGATCCATCAGGAGAGCCAAT 1730
|||||| ||||| ||||||||||| ||||||||||||||||||||||| |||||||| ||
Sbjct 1614 TGCTATAAAATCGGCTATTGTTACAACAGCTTGGAGAACTGATCCATCTGGAGAGCCGAT 1673
Query 1731 ATTCGCAGACGGGTCAAGCCGCAAGCTAGCTGATCCGTTTGATTACGGAGGAGGACTCAT 1790
||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 1674 TTTCGCAGACGGGTCAAGCCGCAAGCTAGCTGATCCATTTGATTACGGAGGAGGCCTCAT 1733
Query 1791 AAATCCAGAGAAAGCTGTAAAACCAGGTCTCATATACGACATGACAACAGATGACTACGT 1850
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 1734 AAATCCAGAGAAAGCTGTAAAGCCAGGTCTCATATACGACATGACCACAGATGACTACGT 1793
Query 1851 TATGTACATGTGCTCTGTTGATTACAGTGACATTTCCATTTCTCGAGTCCTCGGAAAAAT 1910
|||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 1794 TATGTACATGTGCTCTGTTGATTATAGTGACATTTCAATTTCTCGAGTCCTCGGAAAAAC 1853
Query 1911 AACTGTCTGTCCTAATCCCAAACCTTCTGTTCTTGATCTAAATTTGCCTTCCATCACAAT 1970
||| ||||| ||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 1854 AACAGTCTGCCCTAATCCCAAACCTTCTGTTCTTGATCTCAACTTGCCTTCCATCACAAT 1913
Query 1971 TCCAAACCTTAGAGGCGAAGTCACTCTCACAAGAACCGTCACTAACGTTGGACCCGTTAA 2030
||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1914 CCCAAATCTCAGAGGCGAAGTCACTCTCACAAGAACAGTCACTAACGTTGGACCCGTTAA 1973
Query 2031 CTCGGTGTACAAGGTTGTAATCGATCCTCCAACAGGCATTAACGTGGCTGTTACGCCAGC 2090
||| || |||||||||||||||||||||||||| ||| |||| ||||||||||| ||| |
Sbjct 1974 CTCAGTATACAAGGTTGTAATCGATCCTCCAACTGGCGTTAATGTGGCTGTTACACCAAC 2033
Query 2091 GGAACTAGTGTTCGACTATACAACTACAAAGCGATCTTTCACTGTTCGGGTCTCGACTAC 2150
|||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct 2034 AGAACTAGTGTTCGACTCTACAACCACAAAGCGATCTTTCACTGTTCGGGTCTCGACTAC 2093
Query 2151 ACACAAAGTAAACACTGGTTACTATTTTGGAAGCTTGACTTGGACTGATAATATGCACAA 2210
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 2094 ACACAAAGTAAACACTGGTTACTATTTTGGAAGCTTGACTTGGACTGATAATCTTCACAA 2153
Query 2211 TGTAGCCATCCCAGTTTCTGTAAGAACACAAATCTTGCAACGATACTACGACGAAAACTG 2270
||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 2154 TGTAGCCATCCCAGTATCTGTAAGAACACAGATCTTGCAACGGTACTACGACGAAAACTG 2213
Query 2271 A 2271
|
Sbjct 2214 A 2214
Score = 1146 bits (620), Expect = 0.0
Identities = 778/853 (91%), Gaps = 16/853 (2%)
Strand=Plus/Plus
Query 1 ATGAGCAAAACCATACTTTTCTTGGCGTTATTTCTATCTATAGTTTTGAATGTGCAGATC 60
||||||||||||||| || |||| ||||||||||| ||||||||| | ||| |||||| |
Sbjct 1 ATGAGCAAAACCATAATTCTCTTTGCGTTATTTCTGTCTATAGTTCTCAATCTGCAGAAC 60
Query 61 AGTTTCGTCGTAGCTGAGAGCAAGGTTTATGTAGTTTACTTGGGAGAGAAGGAACATGAC 120
||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 61 AGTTTCGTCGTCGCTGAGAGCAAGGTTTATATAGTTTACTTGGGAGAGAAGGAACATGAC 120
Query 121 AATCCTGAGTCTGTCACTGAATCTCACCATCAGATGTTGTGGTCACTTCTTGGAAGCAAA 180
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 121 AATCCTGAGTCTGTCACTGAATCTCACCATCAGATGTTGTCGTCACTTCTTGGAAGCAAA 180
Query 181 GAGGCTGTCCTTGATTCAATAGTGTATAGTTATCGACACGGCTTTTCAGGCTTTGCAGCC 240
||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 181 AAGGCTGTCCTTGATTCAATAGTGTACAGTTATCGACACGGCTTCTCAGGCTTTGCAGCC 240
Query 241 AAGCTCACTGAGTCCCAAGCACAGCAAATTTCTGAACTGCCTGAAGTAGTACAAGTCATA 300
||||| || ||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 241 AAGCTAACAGAGTCCCAAGCTCAGCAAATTTCTGAACTGCCTGAAGTAGTGCAAGTCATA 300
Query 301 CCAAATACATTATACGAAATGACAACAACAAGAACTTGGGATTACTTAGGTGTATCTCCG 360
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 301 CCAAATACATTATACGAAATGACAACAACAAGAACTTGGGATTACTTAGGCATATCTCCA 360
Query 361 GGAAATTCAGATAGTCTCCTACAAAAGGCCAATATGGGGTAC-AATGTAATCGTTGGAGT 419
||||||||||||||||||||| ||||||||| ||||||||| || ||||||||||||||
Sbjct 361 GGAAATTCAGATAGTCTCCTAGAAAAGGCCAGGATGGGGTACCAA-GTAATCGTTGGAGT 419
Query 420 CATCGACTCAGGAGTGTGGCCAGAGTCTGAAATGTTTAATGACAAAGGCTTTGGACCTAT 479
| ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 420 CCTCGACACAGGAGTGTGGCCAGAGTCTGAAATGTTTAATGACAAAGGCTATGGACCTAT 479
Query 480 ACCAAGTCGTTGGAAAGGCGGCTGTGAATCTGGAGAACTCTTCAACGCCTCGATTCATTG 539
|||||| ||||||||||||||||| ||||||||||| |||||||| | ||| ||||||||
Sbjct 480 ACCAAGCCGTTGGAAAGGCGGCTGCGAATCTGGAGACCTCTTCAATGGCTCAATTCATTG 539
Query 540 CAACAGAAAGCTGATAGGAGCAAAATACTTTGTTGATGGTCTTGT-TGCCGAATTTGGAG 598
|||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 540 CAACAGAAAGCTGATAGGAGCAAAATACTTTGTTGATGC-CAACAATGCCGAATTTGGAG 598
Query 599 TCGTGAACAGAACTCAGAACCCTGAGTATCTTTCTCCCA-GAGACTTTGCCGGTCATGGC 657
|| |||||| ||| ||||||| || || ||||| |||| ||||| || ||||||||||
Sbjct 599 TCTTGAACAAAACAGAGAACCCAGACTACCTTTC-CCCAAGAGACATTAACGGTCATGGC 657
Query 658 ACACATGTCGCCTCGACCATTGGTGGTTCTTTTCTGCCTAATGTAAGCTACGTAGGCCTC 717
|| ||||| ||||||||||| |||||||||||||| ||||||||||||||| ||||||||
Sbjct 658 ACGCATGTTGCCTCGACCATCGGTGGTTCTTTTCTACCTAATGTAAGCTACTTAGGCCTC 717
Query 718 GGACGAGGAACTGCAAGAGGCGGTGCTCCCGGTGTTCATATAGCTGTTTATAAGGCATGC 777
|||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 718 GGACGAGGAACTGCAAGAGGTGGTGCTCCCGGTGTTCATATAGCTGTTTATAAGGTATGC 777
Query 778 TGG----A--GTGGGTATTGTTCGGGAGCTGATGTATTAAAAGCAATGGATGAAGCTATC 831
||| | | |||| |||| ||||||||||| |||||||||||||||||||| |||
Sbjct 778 TGGCTTCAAAGAGGGT---GTTCTGGAGCTGATGTCTTAAAAGCAATGGATGAAGCAATC 834
Query 832 CATGATGGT-GTT 843
||||||||| |||
Sbjct 835 CATGATGGTTGTT 847
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85512600025
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5