BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G10595.1

Length=270
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg942877 jgi|Araly1|942877|scaffold_603421.1                        193    7e-49


> Ahg942877 jgi|Araly1|942877|scaffold_603421.1
Length=334

 Score =  193 bits (104),  Expect = 7e-49
 Identities = 156/180 (87%), Gaps = 8/180 (4%)
 Strand=Plus/Plus

Query  82   CAAAGAAGACAAATGAACCAAACATGGTGTTCTAGGCCTCTACTTACCCATAAACAAACA  141
            |||||||||||| |||| |||||||||||||||| | | ||  ||| || ||| ||||| 
Sbjct  132  CAAAGAAGACAAGTGAAACAAACATGGTGTTCTA-GAC-CT--TTA-CC-TAACCAAACT  185

Query  142  GGGAAATGTGTCATCGAAGATTGTGAATCTAAATGTAGGCAGAAGTGGAAAGGGAATGGT  201
            ||||||||| |||||||||| | ||| |||||||||||||||||||||||||||||||||
Sbjct  186  GGGAAATGTATCATCGAAGAATATGAGTCTAAATGTAGGCAGAAGTGGAAAGGGAATGGT  245

Query  202  ACTCAGGCTACATGTCGTAACCAGTGCAACT-GCCATTTTCGTTGTCCATGGATTCAAGG  260
            ||  |||||||||||||| |||| |||| || ||||||||||||| || ||| |||||||
Sbjct  246  ACAGAGGCTACATGTCGTCACCAATGCA-CTTGCCATTTTCGTTGCCCCTGGCTTCAAGG  304



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 9432500467


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5