BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G10600.1
Length=1079
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489906 jgi|Araly1|489906|fgenesh2_kg.6__3040__AT4G10600.1 1144 0.0
> Ahg489906 jgi|Araly1|489906|fgenesh2_kg.6__3040__AT4G10600.1
Length=902
Score = 1144 bits (619), Expect = 0.0
Identities = 816/906 (90%), Gaps = 34/906 (4%)
Strand=Plus/Plus
Query 31 CATAGATTTACGTCAAGATA-G---C-tttttt-tCTATCAAGAATCGCAAAGCTATTTC 84
|||||||||||||||||||| | | |||||| ||||||||||||| ||||||| |||
Sbjct 18 CATAGATTTACGTCAAGATACGTTTCTTTTTTTCTCTATCAAGAATCTCAAAGCTCCTTC 77
Query 85 GCGTAACATTACAATCGTCGTTCAGAAGAAACGAATTGGGTTTGACAAAGCTTCGATATT 144
||||||||||||||||||||| |||||| ||||||| |||||||||||||||||| |||
Sbjct 78 ACGTAACATTACAATCGTCGTTGAGAAGAGACGAATT-GGTTTGACAAAGCTTCGAAATT 136
Query 145 CAGGGAGATTTCTGGGTTAATTTGTGAAAGAATCAGAGAAATTTA-GAGttttttttttG 203
|||| ||||||| | | |||||||| |||||||||||||||||| | |||||||||||
Sbjct 137 TAGGGCGATTTCTTGCTAAATTTGTGGAAGAATCAGAGAAATTTAGGCGTTTTTTTTTTT 196
Query 204 GGGGTAAATTTGAGATGAAGCCACACGAAGATTGGGTTTATGAATCATGGACAGTAGATT 263
||||| ||||||| |||||||||||||| ||||||||||||||||| ||||| |||||||
Sbjct 197 GGGGTTAATTTGATATGAAGCCACACGAGGATTGGGTTTATGAATCTTGGACTGTAGATT 256
Query 264 GTGTTTGTGGTGTGAATTTTGATGATGGTAAAGAGATGGTTGATTGTGATGAATGTGGTG 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 257 GTGTTTGTGGTGTGAATTTTGATGATGGTAAAGAGATGGTTGATTGTGATGAATGTGGTG 316
Query 324 TTTGGGTTCATACATGGTGTTCTCGTTATGTTAAAGGTGATGATTTGTTTGTTTGCCACA 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 317 TTTGGGTTCATACATGGTGTTCTCGTTATGTTAAAGGTGATGATTTGTTTGTTTGCCACA 376
Query 384 AGTGTAAGATAAAAAACAATGAAGATGAATTGTCCAAGTTATCGGTTACTAAATCGTTGA 443
||||||||| ||||| || || ||||||||||| ||| |||||||||||||||| ||||
Sbjct 377 GGTGTAAGATCAAAAAGAACGACGATGAATTGTCGAAGCTATCGGTTACTAAATCATTGA 436
Query 444 GAATGGAGAATTTATGTACGCAGAGTAGTGAGAGTGTTGTATTGAAGGCTTGTTCAGAGA 503
|||||||||||| || || |||||| | ||| ||||||||||||| ||||||||||||
Sbjct 437 GAATGGAGAATTCATCTATTCAGAGT-G--AGACTGTTGTATTGAAGACTTGTTCAGAGA 493
Query 504 TACCAATTGAAGAAAGGGTTCATGTACAAGGAGTTCCTGGTGGTGATTTGGGTTTGTTTG 563
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 494 TACCAATTGAAGAAAGGGTTCATGTACAAGGAGTTCCTGGTGGTGATTTGGCTTTGTTTG 553
Query 564 AATGTGTTTCTTCGGTTTTTAGTCGGCAG-TTATGGAAGTGTAGTGGTTATGTGCCTAAG 622
|||||||||| |||||||||||||||||| || ||||||||| ||||||||||||||||
Sbjct 554 AATGTGTTTCGTCGGTTTTTAGTCGGCAGCTT-TGGAAGTGTTCTGGTTATGTGCCTAAG 612
Query 623 AAGTTTAGGTTTCAGTGTAGGGAGTTTCCTTGTTGGGATGAGAAGGAGAATGTGTGTGAT 682
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 613 AAGTTTAGGTTTCAGTATAGGGAGTTTCCTTGTTGGGATGAGAAGGAGAATGTGTGTGAT 672
Query 683 GTTGTTGGGGATGAAGATGATAGTAATCTTGCTGGTGTTTTGTTGTCTATGTCGAAAGAA 742
|||| ||| ||||||||| | | | | ||||||||||||||||||||||||||||||
Sbjct 673 GTTGGTGGTGATGAAGAT-AC--T--TGT-GCTGGTGTTTTGTTGTCTATGTCGAAAGAA 726
Query 743 AACGGTGTGGATGGTAAGGGAGACAATGCTAGGAATTGTGGTTCTAGAGAAATTGAGAGT 802
|||||||||||||||| ||| || | || | | |||||||| ||||||||||
Sbjct 727 TACGGTGTGGATGGTAAAGGAAAC----C--GG----G-G-TTCTAGAGGAATTGAGAGT 774
Query 803 GATGTAGAGAAAGAGAAGAGCTTGCTTTGTGATCCTTTGAGTATATATAAGAGGAGAAAC 862
|||||||| ||||||||||||||| ||||| | | |||||||||| |||||||||||||
Sbjct 775 GATGTAGACAAAGAGAAGAGCTTGATTTGT-A-C-TTTGAGTATAAATAAGAGGAGAAAA 831
Query 863 GAGTCGGTGGGTGGTTTTGAAGATGGGGTAAAGAAGAAGGTTAAAGTTGCTGATAAAGAG 922
|| |||| |||||||||||||||| |||| ||||||||||||||||||||||| ||||||
Sbjct 832 GAATCGGCGGGTGGTTTTGAAGATCGGGTTAAGAAGAAGGTTAAAGTTGCTGACAAAGAG 891
Query 923 GAAGAA 928
||||||
Sbjct 892 GAAGAA 897
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40181554518
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5