BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G10620.1
Length=1914
Score E
Sequences producing significant alignments: (Bits) Value
Ahg895202 jgi|Araly1|895202|Al_scaffold_0006_3198 2776 0.0
> Ahg895202 jgi|Araly1|895202|Al_scaffold_0006_3198
Length=1794
Score = 2776 bits (1503), Expect = 0.0
Identities = 1706/1803 (95%), Gaps = 18/1803 (1%)
Strand=Plus/Plus
Query 19 ATGCTTTCGAAAGCAGCAAGAGAGCTTTCATCATCAAAGCTTAAACCTTTATTCGCTCTT 78
||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 1 ATGCTTTCGAAAGCAGCGAGAGAGCTTTCTTCATCAAAGCTCAAACCTTTATTCGCTCTT 60
Query 79 CATCTCTCTTCCTTCAAATCTTCCATACCCACTAAACCAAACCCTTCTCCTCCTTCATAT 138
| |||||| |||||||||||| |||||||||||||||||||||| | | ||||||||| |
Sbjct 61 CCTCTCTCCTCCTTCAAATCTCCCATACCCACTAAACCAAACCC-T-T-CTCCTTCATTT 117
Query 139 CTCAATCCCCACCACTTCAACAATATC-TCAAAACCGCCATTT-TTGCGTTTCTACTCTT 196
||||||| ||| |||| ||||| || | |||||| | |||||| || |||||||||||||
Sbjct 118 CTCAATCTCCATCACTCCAACACTA-CATCAAAATCACCATTTCTT-CGTTTCTACTCTT 175
Query 197 CTTCTTCGTCCTCTAATCTCCTTCCGCTAAACAGAGATGGGAATTACAACGATACAACTT 256
|||| | ||||| | ||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 176 CTTC-T--TCCTCCAGTCTCCTTCCGCTAAACAGAGATGGGAACTACAACGATACGACTT 232
Query 257 CAATCACAATCTCCGTTTGCCCAGGTTGTGGAGTTCATATGCAAAACTCAAACCCAAAAC 316
|| |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 233 CAGTCACCATCTCCGTTTGCCCCGGTTGTGGAGTTCATATGCAAAACTCAAACCCAAAAC 292
Query 317 ATCCAGGTTTCTTCATCAAACCATCAACAGAGAAACAGAGGAACGATTTGAATCTTCGTG 376
| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 293 ACCCAGGTTTCTTCATCAAACCATCAACAGAGAAACAGAGGAATGATTTGAATCTTCGTA 352
Query 377 ATCTCACACCCATCTCTCAAGAGCCTGAATTTATAGATTCAATCAAACGAGGGTTTATCA 436
||||| ||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 353 ATCTCGTACCCATCTCTCAAGAACCTGAATTTATAGACTCAATCAAACGAGGGTTTATCA 412
Query 437 TTGAACCAATCAGTAGTTCTGACTTAAACCCT--AGA-GATGATG-AAC-CATC-AGATT 490
|||||||||||| |||||||||||||||||| ||| |||| | ||| ||| |||||
Sbjct 413 TTGAACCAATCAACAGTTCTGACTTAAACCCTAAAGATCATGAAGAAACAGATCAAGATT 472
Query 491 CAAGACCATTGGTTTGTGCTAGGTGTCATTCACTTAGACATTACGGGAGAGTGAAAGATC 550
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 473 CAAGACCATTGGTTTGTGCTAGGTGTCATTCACTTAGACATTACGGGAAAGTGAAAGATC 532
Query 551 CAACGGTTGAGAATCTTCTTCCTGATTTTGATTTTGATCATACTGTTGGTAGGAGACTAG 610
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 533 CAACGGTTGAGAATCTTCTTCCTGATTTTGATTTTGATCATACTGTTGGTAGGAGACTAG 592
Query 611 GTTCAGCTTCTGGTGCTAGAACTGTTGTGTTGATGGTTGTTGATGCTTCAGATTTCGATG 670
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 593 GTTCAGCTTCTGGTGCTAGAACTGTTGTGTTGATGGTTGTTGATGCTTCTGATTTCGATG 652
Query 671 GTTCTTTTCCTAAGAGGGTAGCTAAGCTTGTGTCGAGAACTATTGATGAGAATAATATGG 730
|||||||||| ||||| |||||||||||||| |||||||| |||||||||||||||||||
Sbjct 653 GTTCTTTTCCAAAGAGAGTAGCTAAGCTTGTATCGAGAACGATTGATGAGAATAATATGG 712
Query 731 CTTGGAAAGAAGGGAAGTCTGGTAATGTACCTAGAGTTGTTGTTGTTGTGACTAAGATTG 790
|||||||||||||||| || || ||||| |||||||||||||||||||||||||||||||
Sbjct 713 CTTGGAAAGAAGGGAAATCAGGAAATGTTCCTAGAGTTGTTGTTGTTGTGACTAAGATTG 772
Query 791 ATTTGTTACCGAGTTCGTTGTCTCCTAATAGGTTTGAGCAATGGGTTAGATTAAGAGCTC 850
|||||||||||||||||||||| || | |||||||||||| |||||||||||||||||||
Sbjct 773 ATTTGTTACCGAGTTCGTTGTCGCCGACTAGGTTTGAGCATTGGGTTAGATTAAGAGCTC 832
Query 851 GTGAAGGTGGTTTAAGTAAGATTACTAAGTTGCATTTTGTTAGTCCTGTTAAGAATTGGG 910
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 833 GTGAAGGTGGTTTAAGTAAGATTACTAAGTTGCATTTTGTTAGTCCTGTTAAGAATTGGG 892
Query 911 GGATTAAGGATTTGGTTGAAGATGTGGCTG-CTATGGCTGGGAAGAGAGGTCATGTTTGG 969
||||||||||||||||||||||||||| || ||||||||||||||||||| |||||||||
Sbjct 893 GGATTAAGGATTTGGTTGAAGATGTGG-TGGCTATGGCTGGGAAGAGAGGGCATGTTTGG 951
Query 970 GCTGTTGGATCGCAGAATGCCGGAAAAAGTACGTTGATTAATGCTGTTGGGAAGGTTGTT 1029
|| |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 952 GCGGTTGGATCGCAGAATGCCGGGAAAAGTACGTTGATTAATGCGGTTGGGAAGGTTGTT 1011
Query 1030 GGTGGGAAAGTTTGGCATTTGACGGAAGCTCCTGTGCCGGGAACTACGTTGGGGATAATT 1089
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1012 GGTGGGAAAGTTTGGCATTTGACGGAAGCTCCTGTGCCGGGAACTACATTGGGGATAATT 1071
Query 1090 AGGATTGAAGGTGTTTTGCCTTTTGAGGCTAAGTTGTTTGATACTCCGGGGCTGTTGAAT 1149
||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 1072 AGGATTGAAGGTGTTTTGCCTTTTGAGGCGAAGTTGTTTGATACTCCGGGGTTGTTGAAT 1131
Query 1150 CCGCATCAGATCACTACGAGGCTTACGAGAGAGGAGCAGAGACTTGTTCATATTAGCAAG 1209
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1132 CCGCATCAGATCACGACGAGGCTTACGAGAGAAGAGCAGAGACTTGTTCATATTAGCAAG 1191
Query 1210 GAGCTTAAACCAAGGACTTATAGGATCAAGGAAGGTTATACGGTTCACATTGGTGGGCTA 1269
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 1192 GAGCTTAAACCAAGGACTTATAGGATCAAGGAAGGTTATACGGTTCATATCGGTGGGCTA 1251
Query 1270 ATGAGACTTGACATTGATGAAGCATCTGTTGATTCTCTATATGTGACAGTTTGGGCGTCT 1329
||||||||||||||||||||| | |||||||||||||||||||| |||||||||||||||
Sbjct 1252 ATGAGACTTGACATTGATGAATCGTCTGTTGATTCTCTATATGTAACAGTTTGGGCGTCT 1311
Query 1330 CCTTATGTTCCACTTCACATGGGGAAGAAGGAGAATGCTTACAAAACACTCGAGGACCAT 1389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1312 CCTTATGTTCCACTTCACATGGGGAAGAAGGAGAATGCTTACAAAACACTCGAGGACCAT 1371
Query 1390 TTCGGTTGTCGATTGCAGCCGCCGATTGGAGAGAAGCGGGTTGAAGAGTTGGGGAAATGG 1449
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1372 TTCGGTTGTCGATTGCAGCCGCCGATTGGGGAGAAGCGGGTTGAAGAGTTGGGGAAATGG 1431
Query 1450 GTTAGAAAGGAATTCCGAGTGAGTGGAACCAGTTGGGACACAAGTTCAGTAGATATAGCT 1509
|||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |||
Sbjct 1432 GTTAGAAAGGAATTCCGAGTGAGTGGGAGCAGTTGGGACACAAGTTCAGTAGATATTGCT 1491
Query 1510 GTTTCAGGTCTCGGTTGGTTTGCGTTAGGACTAAAAGGAGACGCGATTTTAGGTGTATGG 1569
|||||||||||||||||||||||||||||||| |||||||| |||||| |||||||||||
Sbjct 1492 GTTTCAGGTCTCGGTTGGTTTGCGTTAGGACTCAAAGGAGAAGCGATTCTAGGTGTATGG 1551
Query 1570 ACTCACGAGGGGATTGATGTCTTCTGCCGTGACTCATTGCTCCCGCAACGAGCACACACT 1629
|||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct 1552 ACTCACGAGGGGATTGATGTCTTCTGCCGTGACTCATTACTCCCGCAACGAGCAAACACT 1611
Query 1630 TTTGAAGACTCTGGATTCACTGTCTCCAAGATCGTTGCCAAAGCTGATAGAAATTTTAAC 1689
|||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1612 TTTGAAGACTCTGGTTTCACTGTCTCCAAGATCGTTGCTAAAGCTGATAGAAATTTTAAT 1671
Query 1690 CAAATTCACAAGGAGGAAACACAGAAGAAACGAAAACCCAACAAGTCTTTTTCAGATTCT 1749
|||||||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||
Sbjct 1672 CAAATTCACAAGGAGGAAACGCAGAAGAAACGAAAACCCAACAAGTCTTCTTCAGGTTCT 1731
Query 1750 GTATCTGACAGAGACAATAGCCGCGAGGTGTCACAGCCTTCAGATATCTTACCAACAATG 1809
||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1732 GTATCTGACGGAGAAAATTGCCGCGAGGTGTCACAGCCTTCAGATATCTTACCAACAATA 1791
Query 1810 TGA 1812
|||
Sbjct 1792 TGA 1794
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71914382560
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5