BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G10630.1
Length=1005
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489910 jgi|Araly1|489910|fgenesh2_kg.6__3044__AT4G10630.1 1094 0.0
> Ahg489910 jgi|Araly1|489910|fgenesh2_kg.6__3044__AT4G10630.1
Length=978
Score = 1094 bits (592), Expect = 0.0
Identities = 882/1015 (87%), Gaps = 47/1015 (5%)
Strand=Plus/Plus
Query 1 ATGGGTTGCGTCTCATCTAACCTCCT-AAACCACGACGAAGACTTCTCTCAAATCGGCGG 59
|||||||||||||||||||||||| | || || ||||||||||||| |||||||||||||
Sbjct 1 ATGGGTTGCGTCTCATCTAACCTCTTGAATCC-CGACGAAGACTTCCCTCAAATCGGCGG 59
Query 60 TGGAAGCTCCGCCTTCGGTCACCACATCGTCAAACTAACCTCCACCACTTATGGTCTTCT 119
||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 60 TGGCAGCTCCGCCTTCGGCCACCACATCGTCAAACTAACCTCCACCACTTACGGTCTTCT 119
Query 120 CACACTCGAtcctcctcctcctcctt-ctcctcc-tATGACGCCGCCGGAGAA-AT-TC- 174
||||||||| | ||||||||||||| |||| || || | || || || || || |
Sbjct 120 CACACTCGA--C-CCTCCTCCTCCTTCCTCCGCCGCAT-TCTCCTCC-GATAATATGCCT 174
Query 175 A-CA-GTCGATACA-AAATCTAAGTCAATATGGTCTGAGCCAAGGGTGATAAAGTCGGAA 231
| | | || | |||||||||||| | |||||||||||||| | || ||||| ||
Sbjct 175 ATGACGCCGCCGGATAAATCTAAGTCATTGTGGTCTGAGCCAAGATTAATCAAGTCTGAG 234
Query 232 CCGGAGATTATTAACTCTTGGGAGTTAATGTCTGGTCTCGACGGAGAGAGTTTCCGATTC 291
|||||||||||||||||||||||| ||||||| || ||||||||||||||||||||||||
Sbjct 235 CCGGAGATTATTAACTCTTGGGAGCTAATGTCAGGCCTCGACGGAGAGAGTTTCCGATTC 294
Query 292 ACGCCACTTCCTAAGACTCCGGTGAAGTATAAAGTGTTTGGTGGAGAGAA-CAAAGAGAA 350
|||||||| || ||||||||||| ||||||||||| ||||| || || || |||||||||
Sbjct 295 ACGCCACTACCGAAGACTCCGGTAAAGTATAAAGTCTTTGGCGGTGA-AAGCAAAGAGAA 353
Query 351 TTCAGATCCTAGTCGGAGAAACCCTAGAAAAAACTTGAACGACGAGGTTTTGAAACCGCT 410
||| ||||||| |||||||||||||||||||| |||||||||||| ||||| ||||||||
Sbjct 354 TTCGGATCCTAATCGGAGAAACCCTAGAAAAATCTTGAACGACGAAGTTTTAAAACCGCT 413
Query 411 AGATCTGAACAGAGAGGATTCGGATTCTAATTCGAGAAGCCCTAGAAAATCGTTTAAACC 470
||||| | || |||||||| |||||| ||||| |||||| ||| | | |
Sbjct 414 AGATC----C---GA--ATTCGGATCCTAATTTGAGAAACCCTAG-AAA--G--T----C 455
Query 471 GTTAGATTTGAAATTGGATGAGAAATTTGAGAGGATTTGTCCACCAGGAGGAGAGAATCG 530
||||||| |||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 456 GTTAGATCTGAAATTGGATGAGAAATTTGAGAGGATTTGTCCTCCGGGAGGAGAGAATCG 515
Query 531 TGTGGTGATGTACACGACGTCGTTGCGAGGTGTTCGTCAAACGTTTGAGGCGTGTAACGC 590
||||||||||||||||||||| ||||| ||||||||| ||||||||||||||||| ||
Sbjct 516 TGTGGTGATGTACACGACGTCCTTGCGCGGTGTTCGTTGGACGTTTGAGGCGTGTAATGC 575
Query 591 TGTGAGAGCGGCGGTGGAGAGTTTTGGTGTTGTGGTTTGCGAGAGAGATGTGTCGATGGA 650
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 576 TGTGAGAGCGGCGGTGGAGAGTTTTGGTGTTGTGGTTTGTGAGAGAGATGTGTCGATGGA 635
Query 651 TAGAAGGTTTAGAGAAGAGCTTGTGAGTCTAATGGCGAAGAGAGTTGGGGATGAGGGAGT 710
|||| ||||||| ||||||||||||||||||||||||||| ||||| ||| || |||||
Sbjct 636 TAGAGGGTTTAGGGAAGAGCTTGTGAGTCTAATGGCGAAGGGAGTTAAGGAAGATGGAGT 695
Query 711 GGCTGCATTGCCGCCTCGGGTTTTTGTGAAGGGAAGGTACATTGGTGGAGGAGAGGAAGT 770
||||||||||||||||||||||||||||||||||| ||| |||||||||| |||||||||
Sbjct 696 GGCTGCATTGCCGCCTCGGGTTTTTGTGAAGGGAATGTATATTGGTGGAGTAGAGGAAGT 755
Query 771 GTTGAGACTAGTTGAGGAAGGTTCTTTCGGAGAGCTGATCAGCGGGATTCCGAGAAAGAA 830
||||||||||||||||||||||||||||||||| |||||| | ||||| |||||||||||
Sbjct 756 GTTGAGACTAGTTGAGGAAGGTTCTTTCGGAGAACTGATCCGTGGGATACCGAGAAAGAA 815
Query 831 AGCGGGAGGATGCGAGAGCGGCGCGTGTGATGGTTGCGGCGGTTTGTTTTTCTTGCCGTG 890
||||| | || | | | |||||||| ||||| ||| ||||||||||||||||
Sbjct 816 AGCGG-A---TG-GTG--CT-----TGTGATGGATGCGGTGGTATGTTTTTCTTGCCGTG 863
Query 891 TTTTCGGTGTAATGGAAGCTGTAAGATGGTGAAAGGATGGGGTAGTGCTTCGGTGGTTGT 950
|||||||||| ||||||||||||| ||||||||||||||||||||||| | || |||||
Sbjct 864 TTTTCGGTGTGATGGAAGCTGTAAAATGGTGAAAGGATGGGGTAGTGCCGCCGTCGTTGT 923
Query 951 GAGATGTAATGAGTGTAATGAGAATGGTCTTGTTCCATGTCCTATTTGCAGTTGA 1005
||||||| |||||||| ||||| ||||||||||||||||| |||||||| |||
Sbjct 924 GAGATGTTCGGAGTGTAACGAGAACGGTCTTGTTCCATGTCCGATTTGCAGCTGA 978
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37360458660
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5