BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G10640.1 Length=1487 Score E Sequences producing significant alignments: (Bits) Value Ahg489911 jgi|Araly1|489911|fgenesh2_kg.6__3045__AT4G10640.1 1753 0.0 > Ahg489911 jgi|Araly1|489911|fgenesh2_kg.6__3045__AT4G10640.1 Length=1369 Score = 1753 bits (949), Expect = 0.0 Identities = 1213/1338 (91%), Gaps = 28/1338 (2%) Strand=Plus/Plus Query 58 tctttctctctGGCTCGTCGCTTTTAGAAAACGTTAATTCAATATGGCTAAAAAGAACGG 117 ||| ||||||||| | ||| || |||||||||||||||||| |||||||| |||||||| Sbjct 40 TCTCTCTCTCTGGTTTGTCAATTATAGAAAACGTTAATTCAAGATGGCTAAGAAGAACGG 99 Query 118 AACGTCTTGGTTCACCGCCGTGAAAAAGATTCTCTGGTCACCGTCAAAAGACTCCGACAA 177 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 100 AACGTCATGGTTCACCGCCGTGAAAAAGATTCTCTGGTCACCGTCAAAAGACTCCGACAA 159 Query 178 GAAGACTCACCACCACAAAGAAACCGA-TATTA--AGAGAAAAGAAAAGAAAGGATGGAT 234 ||||||| |||||||||||||| || ||| | ||||||||||||||||||||||||| Sbjct 160 GAAGACT---CACCACAAAGAAACTGATTATAAGCAGAGAAAAGAAAAGAAAGGATGGAT 216 Query 235 TTTTCGAAAGACCAAACTCGAAACCACAAACTCTGTCTTACAACATACTGT-C---C-G- 288 |||| ||||||||||||||||||||||||||||| | || || || |||| | | | Sbjct 217 TTTTAGAAAGACCAAACTCGAAACCACAAACTCTTTAGTAAAAGATTCTGTCCGTACGGT 276 Query 289 ---TACGGTGGAGGCAGAGGAGAAAGAAAAACCGCCGGTGATTGTCTCCTCCGTAGAGGA 345 |||||||||| ||| ||| |||| |||||| |||||| ||||||| |||| || || Sbjct 277 TCCTACGGTGGAGATAGATGAGGAAGAGAAACCGACGGTGACTGTCTCCGCCGTGGATGA 336 Query 346 AGGTGTCACCGAGATCGTTAAGCTAACGGCAACTCCGGGTTTTATTAGACGTCATTGGGC 405 | |||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 337 TGCTGTCTCCGAGATCGTTAAGCTAACGGCAACTCCGGGTTATATTAGACGTCATTGGGC 396 Query 406 TGCC---ATTATTATTCAGACAGCTTTCCGAGGTTACCTCTCTAGGAGAGCATTACGGGC 462 |||| |||||||||||||||||||||||||| |||||| |||||||||||||||| || Sbjct 397 TGCCATTATTATTATTCAGACAGCTTTCCGAGGCTACCTCGCTAGGAGAGCATTACGAGC 456 Query 463 GTTGAAAGGAATAGTGAAGCTACAAGCATTAGTGAGAGGTAACAATGTAAGAAACCAAGC 522 |||| ||||||||||||| ||||||||||||||||||||||||||||| |||||||||| Sbjct 457 ATTGAGAGGAATAGTGAAGTTACAAGCATTAGTGAGAGGTAACAATGTACGAAACCAAGC 516 Query 523 AAAACTCACTTTAAGATGCATCAAGGCTTTGGTTCGAGTTCAAGATCAAGTGCTTAATCA 582 ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 517 CAAACTCACTCTAAGATGCATCAAGGCTTTGGTTCGAGTTCAAGATCAAGTGCTTAATCA 576 Query 583 TCATCAACAACAACGCTCAAGAGTCTTATTATCACCACCATCGAGAAACTACAATATAGA 642 ||||||||||||||| |||||| ||||| |||| ||||||| || || | || || || Sbjct 577 TCATCAACAACAACGTTCAAGACTCTTAGCATCATCACCATCCAGTAATTGTAACATGGA 636 Query 643 AGCAAGACGTAACTCAATGTTCGCTGAATCTAACGGTTTTTGGGACACCAAAACATATCT 702 |||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||| Sbjct 637 AGCAAGGCGTAACTCGATGTTCGCTGAATCTAACGGTTTTTGGGACACTAAAACATATCT 696 Query 703 TCAAGACATCCGTAGCCGTAGATCTTTGTCGAGGGACATGAATAGGTGCAATAATGAATT 762 ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| Sbjct 697 TCAAGACATCCGTAGCCGTAGATCTTTGTCGAGGGACATGAGTAGGTGCAATGCTGAATT 756 Query 763 TTACTCAGAGGAAACAGAATTGATTTTGCAGAAGAAATTAGAGATTGCTATTAAACGAGA 822 | |||| || |||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 757 TAACTCGGAAGAAACAGAATTGATTTTGCAAAAGAAATTAGAGATTGCTATTAAACGAGA 816 Query 823 GAAAGCTCAAGCACTTGCTCTCTCTAATCAGATTCGGAGCCGGTCTTCCCGGAATCAATC 882 |||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||| Sbjct 817 GAAAGCTCAAGCACTTGCTCTCTCAAATCAGATTCGGAGTCGGTCTTACCGGAATCAATC 876 Query 883 AGCCGGCGATGATAGGGAGCTTCTAGAGAGAACACAATGGCTTGACCGATGGATGGCTAC 942 ||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||| Sbjct 877 AGCCGGCGACGATAGGGAGCTTCTAGAGAGAACACAATGGCTTGATCGGTGGATGGCTAC 936 Query 943 AAAGCAATGGGACGACACAATCACCAATTCCACAAACGTTAGAGATCCTATCAAGACTCT 1002 |||||||||||||||||||||||||||||| || | | |||| ||| ||||||||||| Sbjct 937 AAAGCAATGGGACGACACAATCACCAATTCTACTACC---AGAGCTCCCATCAAGACTCT 993 Query 1003 TGAGGCTGTAACAACTCATCATCATCAGAGATCATATCCAGCGACTCCACCGTCTTGCAG 1062 |||| ||||||| |||||||||||||| ||||| |||||||||||||||||||| ||||| Sbjct 994 TGAGACTGTAACCACTCATCATCATCAAAGATCGTATCCAGCGACTCCACCGTCGTGCAG 1053 Query 1063 AGCTTCAAGATCCGTTATG--GTGAGATCAGCTAGTCCAAGAATACCATGTTCGCCTTCC 1120 | ||| ||||||| || || ||||||||||||||||||||||||||||||||||||||| Sbjct 1054 AACTTTAAGATCC-TT-TGCAGTGAGATCAGCTAGTCCAAGAATACCATGTTCGCCTTCC 1111 Query 1121 TCGATGCAGCCAAATTACATGTCGGCGACAGAGTCGGCTAAGGCTAAGGCAAGGACTCAG 1180 || |||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||| Sbjct 1112 TCAATGCAGCCGAATTACATGTCGGCTACAGAGTCGGCGAAGGCTAAGGCAAGGACTCAG 1171 Query 1181 AGCACGCCACGGAGGAGACCAAT-G--ACAGCGAAGAAGCGGCTTTGTTATGCGGAGGAA 1237 |||||||||||||||||||| | | ||||||||||||||||| ||||||||||| ||| Sbjct 1172 AGCACGCCACGGAGGAGACCGGTTGGGACAGCGAAGAAGCGGCTGTGTTATGCGGATGAA 1231 Query 1238 GAGAGTTTGAGGAGTCCAAGCTTTAAGAGTTGTCTCTGGGGAGATCATGAATCCGATTAT 1297 || |||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||| Sbjct 1232 GATAGTTTGAGGAGTCCAAGCTTTAAGAGCTGTCTCTGGGGTGATCATGAATCGGATTAC 1291 Query 1298 TCTTGTTGTTACGGTGATGGGTTCGCCGGGAAAATCTCACCTTGTTCTACCACTGAGCTC 1357 |||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||| Sbjct 1292 TCTTGTTGTTACGGTGATGGTTTCGCCGGAAAAATCTCACCTTGTTCTACGACTGAGCTC 1351 Query 1358 CGGTGGTTAAAGTGAGAC 1375 |||||||||||||||||| Sbjct 1352 CGGTGGTTAAAGTGAGAC 1369 Score = 67.6 bits (36), Expect = 2e-10 Identities = 38/39 (97%), Gaps = 0/39 (0%) Strand=Plus/Plus Query 3 TATAGTTACTTACATGAGCATCAACTTCACTTATAGCTA 41 ||||||||||||||||||||||||||||||| ||||||| Sbjct 1 TATAGTTACTTACATGAGCATCAACTTCACTAATAGCTA 39 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 55649847945 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5