BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G10640.1
Length=1487
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489911 jgi|Araly1|489911|fgenesh2_kg.6__3045__AT4G10640.1 1753 0.0
> Ahg489911 jgi|Araly1|489911|fgenesh2_kg.6__3045__AT4G10640.1
Length=1369
Score = 1753 bits (949), Expect = 0.0
Identities = 1213/1338 (91%), Gaps = 28/1338 (2%)
Strand=Plus/Plus
Query 58 tctttctctctGGCTCGTCGCTTTTAGAAAACGTTAATTCAATATGGCTAAAAAGAACGG 117
||| ||||||||| | ||| || |||||||||||||||||| |||||||| ||||||||
Sbjct 40 TCTCTCTCTCTGGTTTGTCAATTATAGAAAACGTTAATTCAAGATGGCTAAGAAGAACGG 99
Query 118 AACGTCTTGGTTCACCGCCGTGAAAAAGATTCTCTGGTCACCGTCAAAAGACTCCGACAA 177
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 100 AACGTCATGGTTCACCGCCGTGAAAAAGATTCTCTGGTCACCGTCAAAAGACTCCGACAA 159
Query 178 GAAGACTCACCACCACAAAGAAACCGA-TATTA--AGAGAAAAGAAAAGAAAGGATGGAT 234
||||||| |||||||||||||| || ||| | |||||||||||||||||||||||||
Sbjct 160 GAAGACT---CACCACAAAGAAACTGATTATAAGCAGAGAAAAGAAAAGAAAGGATGGAT 216
Query 235 TTTTCGAAAGACCAAACTCGAAACCACAAACTCTGTCTTACAACATACTGT-C---C-G- 288
|||| ||||||||||||||||||||||||||||| | || || || |||| | | |
Sbjct 217 TTTTAGAAAGACCAAACTCGAAACCACAAACTCTTTAGTAAAAGATTCTGTCCGTACGGT 276
Query 289 ---TACGGTGGAGGCAGAGGAGAAAGAAAAACCGCCGGTGATTGTCTCCTCCGTAGAGGA 345
|||||||||| ||| ||| |||| |||||| |||||| ||||||| |||| || ||
Sbjct 277 TCCTACGGTGGAGATAGATGAGGAAGAGAAACCGACGGTGACTGTCTCCGCCGTGGATGA 336
Query 346 AGGTGTCACCGAGATCGTTAAGCTAACGGCAACTCCGGGTTTTATTAGACGTCATTGGGC 405
| |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 337 TGCTGTCTCCGAGATCGTTAAGCTAACGGCAACTCCGGGTTATATTAGACGTCATTGGGC 396
Query 406 TGCC---ATTATTATTCAGACAGCTTTCCGAGGTTACCTCTCTAGGAGAGCATTACGGGC 462
|||| |||||||||||||||||||||||||| |||||| |||||||||||||||| ||
Sbjct 397 TGCCATTATTATTATTCAGACAGCTTTCCGAGGCTACCTCGCTAGGAGAGCATTACGAGC 456
Query 463 GTTGAAAGGAATAGTGAAGCTACAAGCATTAGTGAGAGGTAACAATGTAAGAAACCAAGC 522
|||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 457 ATTGAGAGGAATAGTGAAGTTACAAGCATTAGTGAGAGGTAACAATGTACGAAACCAAGC 516
Query 523 AAAACTCACTTTAAGATGCATCAAGGCTTTGGTTCGAGTTCAAGATCAAGTGCTTAATCA 582
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 517 CAAACTCACTCTAAGATGCATCAAGGCTTTGGTTCGAGTTCAAGATCAAGTGCTTAATCA 576
Query 583 TCATCAACAACAACGCTCAAGAGTCTTATTATCACCACCATCGAGAAACTACAATATAGA 642
||||||||||||||| |||||| ||||| |||| ||||||| || || | || || ||
Sbjct 577 TCATCAACAACAACGTTCAAGACTCTTAGCATCATCACCATCCAGTAATTGTAACATGGA 636
Query 643 AGCAAGACGTAACTCAATGTTCGCTGAATCTAACGGTTTTTGGGACACCAAAACATATCT 702
|||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 637 AGCAAGGCGTAACTCGATGTTCGCTGAATCTAACGGTTTTTGGGACACTAAAACATATCT 696
Query 703 TCAAGACATCCGTAGCCGTAGATCTTTGTCGAGGGACATGAATAGGTGCAATAATGAATT 762
||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 697 TCAAGACATCCGTAGCCGTAGATCTTTGTCGAGGGACATGAGTAGGTGCAATGCTGAATT 756
Query 763 TTACTCAGAGGAAACAGAATTGATTTTGCAGAAGAAATTAGAGATTGCTATTAAACGAGA 822
| |||| || |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 757 TAACTCGGAAGAAACAGAATTGATTTTGCAAAAGAAATTAGAGATTGCTATTAAACGAGA 816
Query 823 GAAAGCTCAAGCACTTGCTCTCTCTAATCAGATTCGGAGCCGGTCTTCCCGGAATCAATC 882
|||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||
Sbjct 817 GAAAGCTCAAGCACTTGCTCTCTCAAATCAGATTCGGAGTCGGTCTTACCGGAATCAATC 876
Query 883 AGCCGGCGATGATAGGGAGCTTCTAGAGAGAACACAATGGCTTGACCGATGGATGGCTAC 942
||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 877 AGCCGGCGACGATAGGGAGCTTCTAGAGAGAACACAATGGCTTGATCGGTGGATGGCTAC 936
Query 943 AAAGCAATGGGACGACACAATCACCAATTCCACAAACGTTAGAGATCCTATCAAGACTCT 1002
|||||||||||||||||||||||||||||| || | | |||| ||| |||||||||||
Sbjct 937 AAAGCAATGGGACGACACAATCACCAATTCTACTACC---AGAGCTCCCATCAAGACTCT 993
Query 1003 TGAGGCTGTAACAACTCATCATCATCAGAGATCATATCCAGCGACTCCACCGTCTTGCAG 1062
|||| ||||||| |||||||||||||| ||||| |||||||||||||||||||| |||||
Sbjct 994 TGAGACTGTAACCACTCATCATCATCAAAGATCGTATCCAGCGACTCCACCGTCGTGCAG 1053
Query 1063 AGCTTCAAGATCCGTTATG--GTGAGATCAGCTAGTCCAAGAATACCATGTTCGCCTTCC 1120
| ||| ||||||| || || |||||||||||||||||||||||||||||||||||||||
Sbjct 1054 AACTTTAAGATCC-TT-TGCAGTGAGATCAGCTAGTCCAAGAATACCATGTTCGCCTTCC 1111
Query 1121 TCGATGCAGCCAAATTACATGTCGGCGACAGAGTCGGCTAAGGCTAAGGCAAGGACTCAG 1180
|| |||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 1112 TCAATGCAGCCGAATTACATGTCGGCTACAGAGTCGGCGAAGGCTAAGGCAAGGACTCAG 1171
Query 1181 AGCACGCCACGGAGGAGACCAAT-G--ACAGCGAAGAAGCGGCTTTGTTATGCGGAGGAA 1237
|||||||||||||||||||| | | ||||||||||||||||| ||||||||||| |||
Sbjct 1172 AGCACGCCACGGAGGAGACCGGTTGGGACAGCGAAGAAGCGGCTGTGTTATGCGGATGAA 1231
Query 1238 GAGAGTTTGAGGAGTCCAAGCTTTAAGAGTTGTCTCTGGGGAGATCATGAATCCGATTAT 1297
|| |||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||
Sbjct 1232 GATAGTTTGAGGAGTCCAAGCTTTAAGAGCTGTCTCTGGGGTGATCATGAATCGGATTAC 1291
Query 1298 TCTTGTTGTTACGGTGATGGGTTCGCCGGGAAAATCTCACCTTGTTCTACCACTGAGCTC 1357
|||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||
Sbjct 1292 TCTTGTTGTTACGGTGATGGTTTCGCCGGAAAAATCTCACCTTGTTCTACGACTGAGCTC 1351
Query 1358 CGGTGGTTAAAGTGAGAC 1375
||||||||||||||||||
Sbjct 1352 CGGTGGTTAAAGTGAGAC 1369
Score = 67.6 bits (36), Expect = 2e-10
Identities = 38/39 (97%), Gaps = 0/39 (0%)
Strand=Plus/Plus
Query 3 TATAGTTACTTACATGAGCATCAACTTCACTTATAGCTA 41
||||||||||||||||||||||||||||||| |||||||
Sbjct 1 TATAGTTACTTACATGAGCATCAACTTCACTAATAGCTA 39
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55649847945
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5