BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G10650.1
Length=1134
Score E
Sequences producing significant alignments: (Bits) Value
Ahg895207 jgi|Araly1|895207|Al_scaffold_0006_3203 1616 0.0
> Ahg895207 jgi|Araly1|895207|Al_scaffold_0006_3203
Length=1122
Score = 1616 bits (875), Expect = 0.0
Identities = 1041/1123 (93%), Gaps = 4/1123 (0%)
Strand=Plus/Plus
Query 1 ATGGCAACGGCTAAAACCTGGAAGATTGCGAGGGAAATCGGAGACGCCGTGATCAAGGCG 60
|||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCAACGGCTAAAAGCTGGAAGATAGCGAGGGAAATCGGAGACGCCGTGATCAAGGCG 60
Query 61 TCGAGAAACCCTAACCGGAGATGGTACGGACCTCACATGGCCGCAGCAGTTAGAGCAATC 120
||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 61 TCGAGAAACCCTAACCGGAGATGGTACGGACCTCACATGGCTGCAGCAGTTCGAGCAATA 120
Query 121 TCCGAACGTATTCCTTTGGTCGATTTCGTACTTGAGATTC-GAGACGCTCGTATTCCGTT 179
|||||||||||||| | || ||||||||||||||||| | |||||||||||||||| ||
Sbjct 121 TCCGAACGTATTCCGCTAGTAGATTTCGTACTTGAGAT-CAGAGACGCTCGTATTCCATT 179
Query 180 GTCTTCTGAGTATGAGTTGTTGAGAAAGTTTTCGCCTTTACCGTCAAAACGAATCATTGT 239
|||||||| |||||||||||| |||||||||||||||| |||||| |||| ||||| ||
Sbjct 180 ATCTTCTGATTATGAGTTGTTGCGAAAGTTTTCGCCTTTTCCGTCACAACGGATCATCGT 239
Query 240 GTTGAACAAAATGGAACTCGCGGATCCTTTGGAGTTGAAGAAGTGTATAGATTACTTTGA 299
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 240 GTTGAACAAAATGGAACTCGCGGAGCCTTTGGAGTTGAAGAAGTGTATAGATTACTTTGA 299
Query 300 AGAGAGAAACTATCTTTCGTATGCAGTGAATTCACATAACAAAGATTGTGTCAAGCAATT 359
|| |||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||
Sbjct 300 GGAAAGAAACTATCTTTCTTATGCAGTAAATTCACATAACAAAGAGTGTGTCAAGCAATT 359
Query 360 ACTGAACTTTTTGCAGAGTCAAGTTAGGGAATTGCATAAGGCTGGTCATTCTGGTCATAC 419
|| ||||| |||||||||||||||||||||||||| || ||||||||||| ||||||||
Sbjct 360 TCTCAACTTCTTGCAGAGTCAAGTTAGGGAATTGCACAAAGCTGGTCATTCGGGTCATAC 419
Query 420 TACTACTATGATGCTTCTTGGGATTCCTAATGTAGGAAAGTCCGCTCTTTCAAATTCTCT 479
||||||||||||||||||||||||||||| | |||||||| ||||| | ||||| ||
Sbjct 420 CACTACTATGATGCTTCTTGGGATTCCTAACATCGGAAAGTCTGCTCTCGCCAATTCCCT 479
Query 480 TCATCATATCGGAAGGATTAGTGCTGCAGAGAAAGGTAAGCTAAAGCATACAACAGTTAG 539
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TCATCAAATCGGGAGGATTAGTGCTGCAGAGAAAGGTAAGCTAAAGCATACAACAGTTAG 539
Query 540 CTCCCAGCCTGGAGATACTAAAGACATTATGAGCTTGAAGATCGGTAGCCATCCCAATGT 599
||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||
Sbjct 540 TTCCCAGCCTGGAGATACGAAAGACATTATGAGCTTAAAGATCGGTAGCCATCCCAACGT 599
Query 600 CTATGTACTGGACACGCCTGGAATTTTTCCTCCTAATCTGTATGACGCTGAGATCTGCGC 659
||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |
Sbjct 600 CTATGTACTGGACACGCCTGGAATTTTTCCTCCTACTCTGAATGACGCTGAGATCTGCTC 659
Query 660 AAAGTTAGCGTTAACAGGAGCTATCCCGGATGATATAGTTGGGGA-ACTCAAACTAGCAC 718
||| || || || |||||||||||||| ||||||||||||||||| | ||||||||||||
Sbjct 660 AAAATTGGCATTGACAGGAGCTATCCCAGATGATATAGTTGGGGAGA-TCAAACTAGCAC 718
Query 719 GGTTATTTCTGACGATACTAAATTCGAGCCATGAATACAAGAAATGGGCTAAACTGTGCA 778
||||||||||||| |||||||| ||||| ||||||||||||||||||||||||| ||||
Sbjct 719 GGTTATTTCTGACTATACTAAACTCGAGTTATGAATACAAGAAATGGGCTAAACTATGCA 778
Query 779 AATCTCAGGATTTAACAGAAAGTTTATCCGATGAGAGCTCCAAGTCTGATGCCAAACATA 838
|||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| ||
Sbjct 779 AATCTCAGGATTTAACAGAAAGTTTATCCGATGAAAGCTCCAAGTCTGATGGCAAACGTA 838
Query 839 AGAGGCAATACGCAACAGATCATACACAGGATTTTATAGTGTACGACGTTCGAAGAGTTC 898
|||| || ||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 839 AGAGACAGTACCCAACAGATCATACACAGGATTTTATAGTTTACGACGTTCGAAGAGTTC 898
Query 899 TGTACGAGACAATTTCAGCATTTGACGGAAACTTAGAAGACGAAATCAGCATGGGAAATC 958
| ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 899 TATACCAGACAATTTCAGCATTTGACGGAAACTTAGAAGACGATATCAGCATGGGAAATC 958
Query 959 TTATAGAGACGCAATTCGCTGCGTTAAGATCGGTTCTTAGGGTTCCAGAAGAAGCAAGTG 1018
|||||||||| ||||| ||||| |||||| ||||||||| ||||||||||||||||||||
Sbjct 959 TTATAGAGACACAATTTGCTGCCTTAAGAACGGTTCTTATGGTTCCAGAAGAAGCAAGTG 1018
Query 1019 AGTTTGCTGATCTAAGAGTTGCTTCTAAGATATTGAATCTCTATAGAACTGGTAGACTTG 1078
||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1019 AGTTTACTGATCTCAGAGTTGCTTCTAAGATATTGAATCTATATAGAACTGGTAGACTTG 1078
Query 1079 GACATTACACTTTAGAACATGTCTCTGCTCTAGCCAAATCTTA 1121
||||||||||||| ||||||||||||||| ||||||||| |||
Sbjct 1079 GACATTACACTTTGGAACATGTCTCTGCTATAGCCAAATATTA 1121
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42278314953
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5