BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G10650.1 Length=1134 Score E Sequences producing significant alignments: (Bits) Value Ahg895207 jgi|Araly1|895207|Al_scaffold_0006_3203 1616 0.0 > Ahg895207 jgi|Araly1|895207|Al_scaffold_0006_3203 Length=1122 Score = 1616 bits (875), Expect = 0.0 Identities = 1041/1123 (93%), Gaps = 4/1123 (0%) Strand=Plus/Plus Query 1 ATGGCAACGGCTAAAACCTGGAAGATTGCGAGGGAAATCGGAGACGCCGTGATCAAGGCG 60 |||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1 ATGGCAACGGCTAAAAGCTGGAAGATAGCGAGGGAAATCGGAGACGCCGTGATCAAGGCG 60 Query 61 TCGAGAAACCCTAACCGGAGATGGTACGGACCTCACATGGCCGCAGCAGTTAGAGCAATC 120 ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| Sbjct 61 TCGAGAAACCCTAACCGGAGATGGTACGGACCTCACATGGCTGCAGCAGTTCGAGCAATA 120 Query 121 TCCGAACGTATTCCTTTGGTCGATTTCGTACTTGAGATTC-GAGACGCTCGTATTCCGTT 179 |||||||||||||| | || ||||||||||||||||| | |||||||||||||||| || Sbjct 121 TCCGAACGTATTCCGCTAGTAGATTTCGTACTTGAGAT-CAGAGACGCTCGTATTCCATT 179 Query 180 GTCTTCTGAGTATGAGTTGTTGAGAAAGTTTTCGCCTTTACCGTCAAAACGAATCATTGT 239 |||||||| |||||||||||| |||||||||||||||| |||||| |||| ||||| || Sbjct 180 ATCTTCTGATTATGAGTTGTTGCGAAAGTTTTCGCCTTTTCCGTCACAACGGATCATCGT 239 Query 240 GTTGAACAAAATGGAACTCGCGGATCCTTTGGAGTTGAAGAAGTGTATAGATTACTTTGA 299 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 240 GTTGAACAAAATGGAACTCGCGGAGCCTTTGGAGTTGAAGAAGTGTATAGATTACTTTGA 299 Query 300 AGAGAGAAACTATCTTTCGTATGCAGTGAATTCACATAACAAAGATTGTGTCAAGCAATT 359 || |||||||||||||| |||||||| ||||||||||||||||| |||||||||||||| Sbjct 300 GGAAAGAAACTATCTTTCTTATGCAGTAAATTCACATAACAAAGAGTGTGTCAAGCAATT 359 Query 360 ACTGAACTTTTTGCAGAGTCAAGTTAGGGAATTGCATAAGGCTGGTCATTCTGGTCATAC 419 || ||||| |||||||||||||||||||||||||| || ||||||||||| |||||||| Sbjct 360 TCTCAACTTCTTGCAGAGTCAAGTTAGGGAATTGCACAAAGCTGGTCATTCGGGTCATAC 419 Query 420 TACTACTATGATGCTTCTTGGGATTCCTAATGTAGGAAAGTCCGCTCTTTCAAATTCTCT 479 ||||||||||||||||||||||||||||| | |||||||| ||||| | ||||| || Sbjct 420 CACTACTATGATGCTTCTTGGGATTCCTAACATCGGAAAGTCTGCTCTCGCCAATTCCCT 479 Query 480 TCATCATATCGGAAGGATTAGTGCTGCAGAGAAAGGTAAGCTAAAGCATACAACAGTTAG 539 |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 480 TCATCAAATCGGGAGGATTAGTGCTGCAGAGAAAGGTAAGCTAAAGCATACAACAGTTAG 539 Query 540 CTCCCAGCCTGGAGATACTAAAGACATTATGAGCTTGAAGATCGGTAGCCATCCCAATGT 599 ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| || Sbjct 540 TTCCCAGCCTGGAGATACGAAAGACATTATGAGCTTAAAGATCGGTAGCCATCCCAACGT 599 Query 600 CTATGTACTGGACACGCCTGGAATTTTTCCTCCTAATCTGTATGACGCTGAGATCTGCGC 659 ||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| | Sbjct 600 CTATGTACTGGACACGCCTGGAATTTTTCCTCCTACTCTGAATGACGCTGAGATCTGCTC 659 Query 660 AAAGTTAGCGTTAACAGGAGCTATCCCGGATGATATAGTTGGGGA-ACTCAAACTAGCAC 718 ||| || || || |||||||||||||| ||||||||||||||||| | |||||||||||| Sbjct 660 AAAATTGGCATTGACAGGAGCTATCCCAGATGATATAGTTGGGGAGA-TCAAACTAGCAC 718 Query 719 GGTTATTTCTGACGATACTAAATTCGAGCCATGAATACAAGAAATGGGCTAAACTGTGCA 778 ||||||||||||| |||||||| ||||| ||||||||||||||||||||||||| |||| Sbjct 719 GGTTATTTCTGACTATACTAAACTCGAGTTATGAATACAAGAAATGGGCTAAACTATGCA 778 Query 779 AATCTCAGGATTTAACAGAAAGTTTATCCGATGAGAGCTCCAAGTCTGATGCCAAACATA 838 |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| || Sbjct 779 AATCTCAGGATTTAACAGAAAGTTTATCCGATGAAAGCTCCAAGTCTGATGGCAAACGTA 838 Query 839 AGAGGCAATACGCAACAGATCATACACAGGATTTTATAGTGTACGACGTTCGAAGAGTTC 898 |||| || ||| |||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 839 AGAGACAGTACCCAACAGATCATACACAGGATTTTATAGTTTACGACGTTCGAAGAGTTC 898 Query 899 TGTACGAGACAATTTCAGCATTTGACGGAAACTTAGAAGACGAAATCAGCATGGGAAATC 958 | ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 899 TATACCAGACAATTTCAGCATTTGACGGAAACTTAGAAGACGATATCAGCATGGGAAATC 958 Query 959 TTATAGAGACGCAATTCGCTGCGTTAAGATCGGTTCTTAGGGTTCCAGAAGAAGCAAGTG 1018 |||||||||| ||||| ||||| |||||| ||||||||| |||||||||||||||||||| Sbjct 959 TTATAGAGACACAATTTGCTGCCTTAAGAACGGTTCTTATGGTTCCAGAAGAAGCAAGTG 1018 Query 1019 AGTTTGCTGATCTAAGAGTTGCTTCTAAGATATTGAATCTCTATAGAACTGGTAGACTTG 1078 ||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1019 AGTTTACTGATCTCAGAGTTGCTTCTAAGATATTGAATCTATATAGAACTGGTAGACTTG 1078 Query 1079 GACATTACACTTTAGAACATGTCTCTGCTCTAGCCAAATCTTA 1121 ||||||||||||| ||||||||||||||| ||||||||| ||| Sbjct 1079 GACATTACACTTTGGAACATGTCTCTGCTATAGCCAAATATTA 1121 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 42278314953 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5