BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G10660.1
Length=954
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489854 jgi|Araly1|489854|fgenesh2_kg.6__2988__AT4G10660.1 917 0.0
Ahg489914 jgi|Araly1|489914|fgenesh2_kg.6__3048__AT4G10695.1 745 0.0
Ahg942887 jgi|Araly1|942887|scaffold_603431.1 278 7e-74
Ahg895453 jgi|Araly1|895453|Al_scaffold_0006_3449 152 4e-36
> Ahg489854 jgi|Araly1|489854|fgenesh2_kg.6__2988__AT4G10660.1
Length=922
Score = 917 bits (496), Expect = 0.0
Identities = 647/719 (90%), Gaps = 13/719 (2%)
Strand=Plus/Plus
Query 25 GCTGAATCA-GTTCGGGTTGTGGAAAAGCATCCATGGGTTATCACCTTTCCGAACCATGA 83
||||||| | |||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 55 GCTGAAT-ATGTTCGGGTTGCGGAAAAGCATCCATGGGTTATCACCTTTCCGAAACATGA 113
Query 84 AGACTTGA-C-TTTTCTCTTCGATCCATTGGAACGGAAGAGGTACACACTGAATTTACCC 141
||||||| | | ||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 114 TGACTTGACCATCTTC-ATT-GATCCATTGGAACGGAAGAGGTACACACTGAATTTACCC 171
Query 142 GAGTTAGTTGGAACCGATGTTTGTTACTCGAAAGACGGATGGTTGCTTATGCGAAGATCC 201
||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 172 GAGTTAGCTGGAACCGATGTTTGTTACTCGAAATACGGATGGTTGCTTATGCGAAGATTG 231
Query 202 AGTTTAGTGGACATGTTCTTCTTCAACCCGTATACTAGGGAGCTTATAAACTTGCCAAAG 261
| ||||||||||||||||||||||||||| |||||| | ||||||||||| || ||||||
Sbjct 232 AATTTAGTGGACATGTTCTTCTTCAACCCTTATACTCGAGAGCTTATAAATTTACCAAAG 291
Query 262 TGTGAGTTGGCCTTTCAAGCGATTGCTTTCTCTTCGGCCCCTACATCAGGTACTTGTGTG 321
||||||||| |||| || ||||||||||||||||| ||||||||||| |||||||||| |
Sbjct 292 TGTGAGTTGTCCTTCCAGGCGATTGCTTTCTCTTCTGCCCCTACATCGGGTACTTGTGCG 351
Query 322 GTGTTAGCGTTAAGACCTTTTACAAGATATATCATCCGTATAAGCATTTGCT-ATCCTGG 380
|| ||||||||||||||||||| ||||||| | | |||||||||||||| | |||||||
Sbjct 352 GTAATAGCGTTAAGACCTTTTACGAGATATAGCGTTCGTATAAGCATTTG-TCATCCTGG 410
Query 381 AGCAACTGAGTGGATTACTCAAGAATTTTCATGCTCTCTTAGATTTGACCCATACATGCA 440
||| | |||||||||||||||||| ||||| |||||| || ||||||||| |||||||||
Sbjct 411 AGCCATTGAGTGGATTACTCAAGATTTTTCTTGCTCTATTGGATTTGACCTATACATGCA 470
Query 441 TAGCAACCTTGTCTATGCCAACGATCACTTCTATTGTTTTAGCTCAGGAGGTGTTTTAGT 500
|||| |||||||||| ||||| |||||||||||||| || ||||| || |||||||||||
Sbjct 471 TAGCGACCTTGTCTACGCCAATGATCACTTCTATTGCTTCAGCTCGGGCGGTGTTTTAGT 530
Query 501 TGACTTTGATGTAGCTTCCCGCACAATGAGTGAACAAGCATGGAATGAACATAGATGCGC 560
||||||||| || ||||||||||||||||| | |||||||||||||||||||||||| |
Sbjct 531 AGACTTTGATCTATCTTCCCGCACAATGAGTCATCAAGCATGGAATGAACATAGATGCCC 590
Query 561 TTATATGCGTAATGATAATGCA-GAATGGTTTAATCTTCCGAAGAGAATTTACTTGGCTG 619
|||||| | ||||||||||| | |||||||||||| | | ||||||||||||||| | ||
Sbjct 591 TTATATTCATAATGATAATG-ATGAATGGTTTAATATGCTGAAGAGAATTTACTTAGTTG 649
Query 620 AGCAGAAAGGAGAGCTCTTTCTCATGTATACATGTAGCAGCGAGATACCGATGGTGTATA 679
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 650 AGCAGAAAGGAGAGCTCTTTCTCATGTATACATGTAGCAGCGAGATACCGATGGTGTATA 709
Query 680 AACTTGTCTCCTCAAATTGGGAGGAGATAAATAGTA--CTACTCTTGACGGCGTGACAA 736
||||||||||||| | |||||||||||| | ||||| |||||||||||||| |||||
Sbjct 710 AACTTGTCTCCTCGAGTTGGGAGGAGATGAGTAGTATTCTACTCTTGACGGCA-GACAA 767
Score = 191 bits (103), Expect = 9e-48
Identities = 120/128 (94%), Gaps = 2/128 (2%)
Strand=Plus/Plus
Query 829 GGATGTGTATCCTACTCGTTTGATGAAGCCAGGTACTATCCGCGTAAGCAGCTTCCAAAA 888
|||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 795 GGATGTTTATCCTACTCGTTTGATGAAGGTAGGTACTATCCGCGTAAGCAGCTTCCAAAA 854
Query 889 CCAACAATATGGCAAATGCAGAAAGAACTTTGCCCTCTTAGGAGTCT--GGATCGAGCCA 946
|||||||||||||||| |||||||||||| ||||||||||||||||| |||||||||||
Sbjct 855 CCAACAATATGGCAAAAGCAGAAAGAACTATGCCCTCTTAGGAGTCTCTGGATCGAGCCA 914
Query 947 CCGTCTAA 954
|| |||||
Sbjct 915 CCTTCTAA 922
> Ahg489914 jgi|Araly1|489914|fgenesh2_kg.6__3048__AT4G10695.1
Length=613
Score = 745 bits (403), Expect = 0.0
Identities = 499/546 (91%), Gaps = 4/546 (1%)
Strand=Plus/Plus
Query 25 GCTGAATCAGTTCGGGTTGTGGAAAAGCATCCATGGGTTATCACCTTTCCGAACCATGAA 84
|||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 67 GCTGAATCTGTTCGGGTTGTGGAAAAGCATCCGTGGGTTATCACCTTTCCGAAGCATGAC 126
Query 85 GACTTGACTTTTCTCTTCGATCCATTGGAACGGAAGAGGTACACACTGAATTTACCCGAG 144
| ||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 127 GGCTTGACTATTCTCTTCGATCCTTTGGAAAGGAAGAGGTACACACTGAATTTACCCGAG 186
Query 145 TTAGTTGGAACCGATGTTTGTTACTCGAAAGACGGATGGTTGCTT-ATGCGAAGATCCAG 203
|||| ||||||||||||||||||||||||||||||||||||| || |||||||||||| |
Sbjct 187 TTAGCTGGAACCGATGTTTGTTACTCGAAAGACGGATGGTTG-TTGATGCGAAGATCCGG 245
Query 204 TTTAGTGGACATGTTCTTCTTCAACCCGTATACTAGGGAGCTTATAAACTTGCCAAAGTG 263
||||||||||||||||||||||||||| |||||| | |||||||||||||||||||||||
Sbjct 246 TTTAGTGGACATGTTCTTCTTCAACCCTTATACTCGAGAGCTTATAAACTTGCCAAAGTG 305
Query 264 TGAGTTGGCCTTTCAAGCGATTGCTTTCTCTTCGGCCCCTACATCAGGTACTTGTGTGGT 323
||||||| ||||||| || |||||||||||||| || |||||||||||||||||||||||
Sbjct 306 TGAGTTGTCCTTTCAGGCAATTGCTTTCTCTTCAGCTCCTACATCAGGTACTTGTGTGGT 365
Query 324 GTTAGCGTTAAGACCTTTTACAAGATATATCATCCGTATAAGCATTTGCTATCC-TGGAG 382
|||| ||||||||||||| |||| | |||| ||||| ||||||||||| || |||||
Sbjct 366 AATAGCACTAAGACCTTTTACGAGATTTGTCATTCGTATTAGCATTTGCTA-CCTTGGAG 424
Query 383 CAACTGAGTGGATTACTCAAGAATTTTCATGCTCTCTTAGATTTGACCCATACATGCATA 442
||||||||||| |||||||||| ||||| ||||||| |||||||||||||||||||||
Sbjct 425 CAACTGAGTGGGTTACTCAAGATTTTTCTTGCTCTCACGGATTTGACCCATACATGCATA 484
Query 443 GCAACCTTGTCTATGCCAACGATCACTTCTATTGTTTTAGCTCAGGAGGTGTTTTAGTTG 502
||||||||||||||||||| |||||||||||||| || ||||| || |||||||||||||
Sbjct 485 GCAACCTTGTCTATGCCAATGATCACTTCTATTGCTTCAGCTCGGGCGGTGTTTTAGTTG 544
Query 503 ACTTTGATGTAGCTTCCCGCACAATGAGTGAACAAGCATGGAATGAACATAGATGCGCTT 562
|||||||| |||||||||||||||||||| | |||| ||||||||||||||||||| |||
Sbjct 545 ACTTTGATCTAGCTTCCCGCACAATGAGTCATCAAGTATGGAATGAACATAGATGCCCTT 604
Query 563 ATATGC 568
||||||
Sbjct 605 ATATGC 610
> Ahg942887 jgi|Araly1|942887|scaffold_603431.1
Length=238
Score = 278 bits (150), Expect = 7e-74
Identities = 175/187 (94%), Gaps = 2/187 (1%)
Strand=Plus/Plus
Query 764 CGAGATTGGATGTTCTTGGGATGAGGAACAGTGTGTACTTCCCAAAGTATGGTTTAGATT 823
||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| ||
Sbjct 1 CGAGATTGGATGTTCTTGGTATGAAGAACAGTGTGTACTTCCCAAAGTATGGTTTACATG 60
Query 824 GCAAGGGATGTGTATCCTACTCGTTTGATGAAGCCAGGTACTATCCGCGTAAGCAGCTTC 883
|||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 61 GCAAAGGATGTGTATCCTACTCGTTTGATGAAGGTAGGTACTATCCGCGTAAGCAGCTTC 120
Query 884 CAAAACCAACAATATGGCAAATGCAGAAAGAACTTTGCCCTCTTAGGAGTCT--GGATCG 941
|||||||||||||||| |||| |||||||||||| ||||||||||||||||| ||||||
Sbjct 121 CAAAACCAACAATATGCCAAAAGCAGAAAGAACTATGCCCTCTTAGGAGTCTTTGGATCG 180
Query 942 AGCCACC 948
|||||||
Sbjct 181 AGCCACC 187
> Ahg895453 jgi|Araly1|895453|Al_scaffold_0006_3449
Length=702
Score = 152 bits (82), Expect = 4e-36
Identities = 396/538 (74%), Gaps = 59/538 (11%)
Strand=Plus/Plus
Query 364 AGCATTTGCTATCCTGGAGCAACTGAGTGGATTACTCAAGAATTTTCATGCTCTCTTAGA 423
|||| |||| ||||||||||||||||||||||||||||||| || | | || | ||| |
Sbjct 127 AGCACTTGCCATCCTGGAGCAACTGAGTGGATTACTCAAGACTTCCC-TACT-T-TTATA 183
Query 424 TTTGACCCAT--ACATGCATA-GCAACCTTGTCTAT-GCCA-ACGATC-ACTTCTATTGT 477
||| | |||||| || |||||||||||||| || | | |||| | ||||||||
Sbjct 184 AA--ACCGTTTTACATGC-TAAGCAACCTTGTCTATCGC-AGA-GATCGA-TTCTATTGC 237
Query 478 TTTAGCTCAGGAGGTGTTTTAGT-TGACTTTGATGTAGCTTC-CCGCACAATGAGTGAAC 535
|||| | ||| ||| ||| || | ||||||| | || | ||||||| || | |||
Sbjct 238 TTTAACGCAGAAGGAACTTT-GTATAACTTTGAACCATCT-CACCGCACA-TG-G--AAC 291
Query 536 AAGCAT--G-GA--ATGAACAT-AGATGCGCTTATATGCGTAATGATAATGCAGAATG-G 588
| ||| | | || ||| | |||||| | ||||| | ||| | | |||| ||| |
Sbjct 292 TA-CATTTGTGCGGATAAAC-TCAGATGCCCGTATATCCATAA--A-A-TGCACTATGTG 345
Query 589 TTTAATCTTCCGAAGAGAATTTAC-TTGGCT-GAGCAGAAAGGAGAGCTCTTTCTCATGT 646
|| ||| || || | || | |||| | ||| ||||||||||||||||| ||||||
Sbjct 346 TTGAATGA---GAT-AGCAGTTGCCTTGG-TAGAGAAGAAAGGAGAGCTCTTTGTCATGT 400
Query 647 ATACATGTAGCAGCGAGATA-CCGATGGTGTATAAACT-TGTCTCCTCAAATTGGGAGGA 704
|||||| |||| | ||| | || |||||||||||||| | |||| | | ||| ||||
Sbjct 401 TTACATGCAGCAACCAGA-AGCCAATGGTGTATAAACTAT-TCTCTTTGGAGTGGAAGGA 458
Query 705 GATAAATAGTACTACTCTTGACGGCGTGACAATCTTTG-CAAGTATGTATTCCTCGGAGA 763
|| | ||| || || ||||| ||| |||||||||||| || || | ||| ||| |||
Sbjct 459 AATGACTAGGACAACACTTGATGGCTTGACAATCTTTGTCA-GTTTTTATAACTCTGAGT 517
Query 764 CGAGA-TTGGATGTTCT-TGGGATGAGGAACAGTGTGTACTTCCCAAAGTATGGTTTAGA 821
|||| || || | | ||| |||||||||| ||| || ||| ||| || ||||| | |
Sbjct 518 TGAGAATTA-ATCTCCCATGG-ATGAGGAACAATGTCTATTTCTCAAGGTTTGGTT-ACA 574
Query 822 TT-GCAAGGGAT-GTGTATCCTACTCGTTTGATGAA-GCCAGGTACTATCCGCGTAAG 876
|||| || ||||||||||||||||||||||| || |||||| |||||||||||
Sbjct 575 ACCGCAAAC-ATTGTGTATCCTACTCGTTTGATGAAAGC-AGGTACAATCCGCGTAAG 630
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35416189893
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5