BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G10695.1
Length=705
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489914 jgi|Araly1|489914|fgenesh2_kg.6__3048__AT4G10695.1 833 0.0
Ahg489854 jgi|Araly1|489854|fgenesh2_kg.6__2988__AT4G10660.1 761 0.0
Ahg942886 jgi|Araly1|942886|scaffold_603430.1 302 3e-81
Ahg895453 jgi|Araly1|895453|Al_scaffold_0006_3449 60.2 2e-08
> Ahg489914 jgi|Araly1|489914|fgenesh2_kg.6__3048__AT4G10695.1
Length=613
Score = 833 bits (451), Expect = 0.0
Identities = 565/619 (91%), Gaps = 12/619 (2%)
Strand=Plus/Plus
Query 1 ATGTCTTATCTTGGT-TTAAAAGATAACATTCGTGCATCCGCGGTCTGCCGA-GCATGGC 58
|||||||||| | || ||| ||||||||||||||| || || ||||| | | |||||||
Sbjct 1 ATGTCTTATC-TCGTCCTAAGAGATAACATTCGTGCGTCGGCTGTCTG-CAAGGCATGGC 58
Query 59 GTAAAGCCGCTGAATCAGTTCGGGTTGTGGAGAAGCATCCATGGGTTATCAGCTTTCCG- 117
||||||| |||||||| |||||||||||||| |||||||| |||||||||| |||||||
Sbjct 59 GTAAAGCGGCTGAATCTGTTCGGGTTGTGGAAAAGCATCCGTGGGTTATCACCTTTCCGA 118
Query 118 AGACATTACGGCGTGACTATTCTCTTCGATCCATTGGGAAGGAAGAGTTACACACTGAAT 177
|| ||| ||||| ||||||||||||||||||| |||| ||||||||| ||||||||||||
Sbjct 119 AG-CATGACGGCTTGACTATTCTCTTCGATCCTTTGGAAAGGAAGAGGTACACACTGAAT 177
Query 178 TTACCCGAGTTAGTTGGAACCGATGTTTGTTACTCGAAAGACGGATGGTTGCTT-ATGCG 236
||||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 178 TTACCCGAGTTAGCTGGAACCGATGTTTGTTACTCGAAAGACGGATGGTTG-TTGATGCG 236
Query 237 AAGATCCAGTTTAGTGGACATGTTCTTCCTCAACCCGTATACTAGGGAGCTTATAAACTT 296
||||||| |||||||||||||||||||| ||||||| |||||| | ||||||||||||||
Sbjct 237 AAGATCCGGTTTAGTGGACATGTTCTTCTTCAACCCTTATACTCGAGAGCTTATAAACTT 296
Query 297 GCCAAAGTGTGAGTTGTCCTTTCAGGCTGTTGCTTTCTCTTC-GGTACCTACATCAGGTA 355
||||||||||||||||||||||||||| ||||||||||||| | | |||||||||||||
Sbjct 297 GCCAAAGTGTGAGTTGTCCTTTCAGGCAATTGCTTTCTCTTCAGCT-CCTACATCAGGTA 355
Query 356 CTTGTGCGGTAATAGCGTTAAGACCTTTTACGAGATTTATCATTCGTATAAGCATTTGCT 415
|||||| ||||||||| |||||||||||||||||||| |||||||||| |||||||||
Sbjct 356 CTTGTGTGGTAATAGCACTAAGACCTTTTACGAGATTTGTCATTCGTATTAGCATTTGC- 414
Query 416 TTCC-TGGAGCAACTGAGTGGATTACTCAAGATTTTTCTTGCTCTCATGGATTTGAGCCG 474
| || |||||||||||||||| ||||||||||||||||||||||||| |||||||| ||
Sbjct 415 TACCTTGGAGCAACTGAGTGGGTTACTCAAGATTTTTCTTGCTCTCACGGATTTGACCCA 474
Query 475 TACATGCATAGCAATCTTGTCTATGCCAATGGTCACTTCTATTGCTTCAGCTCGGGAGGT 534
|||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |||
Sbjct 475 TACATGCATAGCAACCTTGTCTATGCCAATGATCACTTCTATTGCTTCAGCTCGGGCGGT 534
Query 535 GTTTTAGTTGACTTTGATCTAGCTTCCCGCACAATGAGTCATCAAGCATGGAATGAACAT 594
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 535 GTTTTAGTTGACTTTGATCTAGCTTCCCGCACAATGAGTCATCAAGTATGGAATGAACAT 594
Query 595 ATATGCCCTTATATTCATA 613
| |||||||||||| ||||
Sbjct 595 AGATGCCCTTATATGCATA 613
> Ahg489854 jgi|Araly1|489854|fgenesh2_kg.6__2988__AT4G10660.1
Length=922
Score = 761 bits (412), Expect = 0.0
Identities = 559/628 (89%), Gaps = 18/628 (3%)
Strand=Plus/Plus
Query 52 GCATGGCGTAAAGCCGCTGAATCA-GTTCGGGTTGTGGAGAAGCATCCATGGGTTATCAG 110
|||| ||||||||||||||||| | |||||||||| ||| |||||||||||||||||||
Sbjct 40 GCATTGCGTAAAGCCGCTGAAT-ATGTTCGGGTTGCGGAAAAGCATCCATGGGTTATCAC 98
Query 111 CTTTCCGAGACATTACGGCGTGACTATTC-TC-TTCGATCCATTGGGAA-GGAAGAGTTA 167
|||||||| |||| | | | |||| | || || || |||||||| |||| ||||||| ||
Sbjct 99 CTTTCCGAAACATGATGACTTGACCA-TCTTCATT-GATCCATT-GGAACGGAAGAGGTA 155
Query 168 CACACTGAATTTACCCGAGTTAGTTGGAACCGATGTTTGTTACTCGAAAGACGGATGGTT 227
||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 156 CACACTGAATTTACCCGAGTTAGCTGGAACCGATGTTTGTTACTCGAAATACGGATGGTT 215
Query 228 GCTTATGCGAAGATCCAGTTTAGTGGACATGTTCTTCCTCAACCCGTATACTAGGGAGCT 287
|||||||||||||| | ||||||||||||||||||| ||||||| |||||| | |||||
Sbjct 216 GCTTATGCGAAGATTGAATTTAGTGGACATGTTCTTCTTCAACCCTTATACTCGAGAGCT 275
Query 288 TATAAACTTGCCAAAGTGTGAGTTGTCCTTTCAGGCTG-TTGCTTTCTCTTCGGTACCTA 346
|||||| || |||||||||||||||||||| ||||| | ||||||||||||| | ||||
Sbjct 276 TATAAATTTACCAAAGTGTGAGTTGTCCTTCCAGGC-GATTGCTTTCTCTTCTGCCCCTA 334
Query 347 CATCAGGTACTTGTGCGGTAATAGCGTTAAGACCTTTTACGAGATTTATCATTCGTATAA 406
|||| |||||||||||||||||||||||||||||||||||||||| || | |||||||||
Sbjct 335 CATCGGGTACTTGTGCGGTAATAGCGTTAAGACCTTTTACGAGATATAGCGTTCGTATAA 394
Query 407 GCATTTGCT-TTCCTGGAGCAACTGAGTGGATTACTCAAGATTTTTCTTGCTCTCA-TGG 464
||||||| | ||||||||| | ||||||||||||||||||||||||||||||| | |||
Sbjct 395 GCATTTG-TCATCCTGGAGCCATTGAGTGGATTACTCAAGATTTTTCTTGCTCT-ATTGG 452
Query 465 ATTTGAGCC-GTACATGCATAGCAATCTTGTCTATGCCAATGGTCACTTCTATTGCTTCA 523
|||||| || |||||||||||| | |||||||| ||||||| |||||||||||||||||
Sbjct 453 ATTTGA-CCTATACATGCATAGCGACCTTGTCTACGCCAATGATCACTTCTATTGCTTCA 511
Query 524 GCTCGGGAGGTGTTTTAGTTGACTTTGATCTAGCTTCCCGCACAATGAGTCATCAAGCAT 583
||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 512 GCTCGGGCGGTGTTTTAGTAGACTTTGATCTATCTTCCCGCACAATGAGTCATCAAGCAT 571
Query 584 GGAATGAACATATATGCCCTTATATTCATA-TGTACAATGAAGAATGGTTTAGTCTTAGG 642
|||||||||||| ||||||||||||||||| || | ||||| |||||||||| | | |
Sbjct 572 GGAATGAACATAGATGCCCTTATATTCATAATG-ATAATGATGAATGGTTTAATATGCTG 630
Query 643 AAGAGAATTTACTTGGCTGAGCAGAAAG 670
|||||||||||||| | |||||||||||
Sbjct 631 AAGAGAATTTACTTAGTTGAGCAGAAAG 658
> Ahg942886 jgi|Araly1|942886|scaffold_603430.1
Length=337
Score = 302 bits (163), Expect = 3e-81
Identities = 271/320 (85%), Gaps = 20/320 (6%)
Strand=Plus/Plus
Query 292 AACTTGCCAAAGTGTGAGTTGTCCTTTCAGGCTG-TTGCTTTCTCTTCGGT-ACCTACAT 349
||||| ||||||||| |||||||||| ||| | | ||||||||||||| | || ||||
Sbjct 33 AACTTACCAAAGTGTAAGTTGTCCTTCCAGAC-GATTGCTTTCTCTTC-ATCCCCAACAT 90
Query 350 CAGGTACTTGTGCGGTAATAGCGTTAAGACCTTTTACGAGATTTATCATTCGTA-TAAGC 408
| |||| |||||| |||||||||||||||||||| | ||||| || | | |||| | |||
Sbjct 91 CGGGTATTTGTGCTGTAATAGCGTTAAGACCTTTGATGAGATATAGCGTCCGTAGT-AGC 149
Query 409 ATTTGCTTTCCTGGAGCAACTGAGTGGATTACTCAAGATTTTTCTTGCTCTCATGGATTT 468
||||||| || |||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct 150 ATTTGCTATCTTGGAGCAATTGAGTGGATTACTCAAGATTTTCCTTGCTCTCATGGATTT 209
Query 469 GAGCCGTACATGCATAGCAATCTTGTCTATGCCAATGGTCACTTCTATTGCTTCAGCTCG 528
|| || |||||||||||||| ||| |||||||||||| |||||||||||||||||||||
Sbjct 210 GATCCATACATGCATAGCAACCTTTTCTATGCCAATGATCACTTCTATTGCTTCAGCTC- 268
Query 529 GGAGGTGTTTTAGTTGACTTTGATCTAGCTTCCCGCACAATGAGTCATCAAGCATGGAAT 588
| |||| || || || | || | ||||||||||||||||||||||||||||||
Sbjct 269 -G-GGTG--GTA-TT---TTAG-TC--G--TCCCGCACAATGAGTCATCAAGCATGGAAT 315
Query 589 GAACATATATGCCCTTATAT 608
|||||| ||||||||||||
Sbjct 316 AAACATAGATGCCCTTATAT 335
> Ahg895453 jgi|Araly1|895453|Al_scaffold_0006_3449
Length=702
Score = 60.2 bits (32), Expect = 2e-08
Identities = 38/41 (93%), Gaps = 0/41 (0%)
Strand=Plus/Plus
Query 406 AGCATTTGCTTTCCTGGAGCAACTGAGTGGATTACTCAAGA 446
|||| |||| ||||||||||||||||||||||||||||||
Sbjct 127 AGCACTTGCCATCCTGGAGCAACTGAGTGGATTACTCAAGA 167
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25923583560
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5