BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G10700.1
Length=744
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489914 jgi|Araly1|489914|fgenesh2_kg.6__3048__AT4G10695.1 348 4e-95
Ahg489854 jgi|Araly1|489854|fgenesh2_kg.6__2988__AT4G10660.1 315 4e-85
Ahg942887 jgi|Araly1|942887|scaffold_603431.1 298 4e-80
> Ahg489914 jgi|Araly1|489914|fgenesh2_kg.6__3048__AT4G10695.1
Length=613
Score = 348 bits (188), Expect = 4e-95
Identities = 225/243 (93%), Gaps = 2/243 (1%)
Strand=Plus/Plus
Query 25 GCTGAATCAGTTCGGGTTGTGGAAAAGCATCCATGGGTTATCACCTTTCCGAACCATGAA 84
|||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 67 GCTGAATCTGTTCGGGTTGTGGAAAAGCATCCGTGGGTTATCACCTTTCCGAAGCATGAC 126
Query 85 GACATGACTTTTCTCTTCGATCCATTGGAACGGAAGAGGTACACACTGAATTTACCCGAG 144
| | ||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 127 GGCTTGACTATTCTCTTCGATCCTTTGGAAAGGAAGAGGTACACACTGAATTTACCCGAG 186
Query 145 GTAGTTGGAACCGATGTTTGTTACTCGAAAGACGGATGGTTGCTT-ATGCGAAGATCCAG 203
||| ||||||||||||||||||||||||||||||||||||| || |||||||||||| |
Sbjct 187 TTAGCTGGAACCGATGTTTGTTACTCGAAAGACGGATGGTTG-TTGATGCGAAGATCCGG 245
Query 204 TTTAGTGGACATGTTCTTCTTCAACCCGTATACTAGGGAGCTTATAAACTTGCCAAAGTT 263
||||||||||||||||||||||||||| |||||| | ||||||||||||||||||||||
Sbjct 246 TTTAGTGGACATGTTCTTCTTCAACCCTTATACTCGAGAGCTTATAAACTTGCCAAAGTG 305
Query 264 TGA 266
|||
Sbjct 306 TGA 308
> Ahg489854 jgi|Araly1|489854|fgenesh2_kg.6__2988__AT4G10660.1
Length=922
Score = 315 bits (170), Expect = 4e-85
Identities = 221/245 (90%), Gaps = 6/245 (2%)
Strand=Plus/Plus
Query 25 GCTGAATCA-GTTCGGGTTGTGGAAAAGCATCCATGGGTTATCACCTTTCCGAACCATGA 83
||||||| | |||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 55 GCTGAAT-ATGTTCGGGTTGCGGAAAAGCATCCATGGGTTATCACCTTTCCGAAACATGA 113
Query 84 AGACATGA-C-TTTTCTCTTCGATCCATTGGAACGGAAGAGGTACACACTGAATTTACCC 141
||| ||| | | ||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 114 TGACTTGACCATCTTC-ATT-GATCCATTGGAACGGAAGAGGTACACACTGAATTTACCC 171
Query 142 GAGGTAGTTGGAACCGATGTTTGTTACTCGAAAGACGGATGGTTGCTTATGCGAAGATCC 201
||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 172 GAGTTAGCTGGAACCGATGTTTGTTACTCGAAATACGGATGGTTGCTTATGCGAAGATTG 231
Query 202 AGTTTAGTGGACATGTTCTTCTTCAACCCGTATACTAGGGAGCTTATAAACTTGCCAAAG 261
| ||||||||||||||||||||||||||| |||||| | ||||||||||| || ||||||
Sbjct 232 AATTTAGTGGACATGTTCTTCTTCAACCCTTATACTCGAGAGCTTATAAATTTACCAAAG 291
Query 262 TTTGA 266
| |||
Sbjct 292 TGTGA 296
Score = 313 bits (169), Expect = 1e-84
Identities = 215/237 (91%), Gaps = 3/237 (1%)
Strand=Plus/Plus
Query 265 GACCTTGATCTAGCTTCCCGCACAATGAGTGAGCAAGCATGGAATGAACATAGATGCGCT 324
||| |||||||| ||||||||||||||||| | |||||||||||||||||||||||| ||
Sbjct 532 GACTTTGATCTATCTTCCCGCACAATGAGTCATCAAGCATGGAATGAACATAGATGCCCT 591
Query 325 TATATGCGCAATGATAATGCTGAATGGTTTAATCTTCCGAAGAGAATTTACTTGGCTGAG 384
||||| | |||||||||| ||||||||||||| | | ||||||||||||||| | ||||
Sbjct 592 TATATTCATAATGATAATGATGAATGGTTTAATATGCTGAAGAGAATTTACTTAGTTGAG 651
Query 385 CAGAAAGGAGAGCTCTTTCTCATGTATACATGTAGCAGCGAGATACCGATGGTGTATAAA 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 652 CAGAAAGGAGAGCTCTTTCTCATGTATACATGTAGCAGCGAGATACCGATGGTGTATAAA 711
Query 445 CTTGTCTCCTCAAATTTGGAGGAGATGAATAGTA--CTACTCTTGACGGCGTGACAA 499
||||||||||| | || ||||||||||| ||||| |||||||||||||| |||||
Sbjct 712 CTTGTCTCCTCGAGTTGGGAGGAGATGAGTAGTATTCTACTCTTGACGGCA-GACAA 767
> Ahg942887 jgi|Araly1|942887|scaffold_603431.1
Length=238
Score = 298 bits (161), Expect = 4e-80
Identities = 201/220 (91%), Gaps = 4/220 (2%)
Strand=Plus/Plus
Query 527 CGAGATTGGATGTTCTTGGGATGAGGAACAGTGTGTACTTCCCAAAGTATGGTTTAGATT 586
||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| ||
Sbjct 1 CGAGATTGGATGTTCTTGGTATGAAGAACAGTGTGTACTTCCCAAAGTATGGTTTACATG 60
Query 587 GCAAGGGATGTGTATCCTACTCGTTTGATGAAGCCAGGTACTATCCGCGTAAGCAG-TTC 645
|||| |||||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 61 GCAAAGGATGTGTATCCTACTCGTTTGATGAAGGTAGGTACTATCCGCGTAAGCAGCTT- 119
Query 646 CCTAAACCAACAATGTGGCAAATGCAGAAAGAACTTTGCCCTCTTAGGAGTCTTTGGATC 705
|| ||||||||||| || |||| |||||||||||| ||||||||||||||||||||||||
Sbjct 120 CCAAAACCAACAATATGCCAAAAGCAGAAAGAACTATGCCCTCTTAGGAGTCTTTGGATC 179
Query 706 GAGCCACCGTCTAAGGACATCTTAGA-TGTGATAAAATGA 744
|||||||| | ||||||||||||||| | |||| ||||||
Sbjct 180 GAGCCACCTTTTAAGGACATCTTAGACT-TGATGAAATGA 218
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27410377323
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5