BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G10700.1 Length=744 Score E Sequences producing significant alignments: (Bits) Value Ahg489914 jgi|Araly1|489914|fgenesh2_kg.6__3048__AT4G10695.1 348 4e-95 Ahg489854 jgi|Araly1|489854|fgenesh2_kg.6__2988__AT4G10660.1 315 4e-85 Ahg942887 jgi|Araly1|942887|scaffold_603431.1 298 4e-80 > Ahg489914 jgi|Araly1|489914|fgenesh2_kg.6__3048__AT4G10695.1 Length=613 Score = 348 bits (188), Expect = 4e-95 Identities = 225/243 (93%), Gaps = 2/243 (1%) Strand=Plus/Plus Query 25 GCTGAATCAGTTCGGGTTGTGGAAAAGCATCCATGGGTTATCACCTTTCCGAACCATGAA 84 |||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||| Sbjct 67 GCTGAATCTGTTCGGGTTGTGGAAAAGCATCCGTGGGTTATCACCTTTCCGAAGCATGAC 126 Query 85 GACATGACTTTTCTCTTCGATCCATTGGAACGGAAGAGGTACACACTGAATTTACCCGAG 144 | | ||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||| Sbjct 127 GGCTTGACTATTCTCTTCGATCCTTTGGAAAGGAAGAGGTACACACTGAATTTACCCGAG 186 Query 145 GTAGTTGGAACCGATGTTTGTTACTCGAAAGACGGATGGTTGCTT-ATGCGAAGATCCAG 203 ||| ||||||||||||||||||||||||||||||||||||| || |||||||||||| | Sbjct 187 TTAGCTGGAACCGATGTTTGTTACTCGAAAGACGGATGGTTG-TTGATGCGAAGATCCGG 245 Query 204 TTTAGTGGACATGTTCTTCTTCAACCCGTATACTAGGGAGCTTATAAACTTGCCAAAGTT 263 ||||||||||||||||||||||||||| |||||| | |||||||||||||||||||||| Sbjct 246 TTTAGTGGACATGTTCTTCTTCAACCCTTATACTCGAGAGCTTATAAACTTGCCAAAGTG 305 Query 264 TGA 266 ||| Sbjct 306 TGA 308 > Ahg489854 jgi|Araly1|489854|fgenesh2_kg.6__2988__AT4G10660.1 Length=922 Score = 315 bits (170), Expect = 4e-85 Identities = 221/245 (90%), Gaps = 6/245 (2%) Strand=Plus/Plus Query 25 GCTGAATCA-GTTCGGGTTGTGGAAAAGCATCCATGGGTTATCACCTTTCCGAACCATGA 83 ||||||| | |||||||||| ||||||||||||||||||||||||||||||||| ||||| Sbjct 55 GCTGAAT-ATGTTCGGGTTGCGGAAAAGCATCCATGGGTTATCACCTTTCCGAAACATGA 113 Query 84 AGACATGA-C-TTTTCTCTTCGATCCATTGGAACGGAAGAGGTACACACTGAATTTACCC 141 ||| ||| | | ||| || ||||||||||||||||||||||||||||||||||||||| Sbjct 114 TGACTTGACCATCTTC-ATT-GATCCATTGGAACGGAAGAGGTACACACTGAATTTACCC 171 Query 142 GAGGTAGTTGGAACCGATGTTTGTTACTCGAAAGACGGATGGTTGCTTATGCGAAGATCC 201 ||| ||| ||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 172 GAGTTAGCTGGAACCGATGTTTGTTACTCGAAATACGGATGGTTGCTTATGCGAAGATTG 231 Query 202 AGTTTAGTGGACATGTTCTTCTTCAACCCGTATACTAGGGAGCTTATAAACTTGCCAAAG 261 | ||||||||||||||||||||||||||| |||||| | ||||||||||| || |||||| Sbjct 232 AATTTAGTGGACATGTTCTTCTTCAACCCTTATACTCGAGAGCTTATAAATTTACCAAAG 291 Query 262 TTTGA 266 | ||| Sbjct 292 TGTGA 296 Score = 313 bits (169), Expect = 1e-84 Identities = 215/237 (91%), Gaps = 3/237 (1%) Strand=Plus/Plus Query 265 GACCTTGATCTAGCTTCCCGCACAATGAGTGAGCAAGCATGGAATGAACATAGATGCGCT 324 ||| |||||||| ||||||||||||||||| | |||||||||||||||||||||||| || Sbjct 532 GACTTTGATCTATCTTCCCGCACAATGAGTCATCAAGCATGGAATGAACATAGATGCCCT 591 Query 325 TATATGCGCAATGATAATGCTGAATGGTTTAATCTTCCGAAGAGAATTTACTTGGCTGAG 384 ||||| | |||||||||| ||||||||||||| | | ||||||||||||||| | |||| Sbjct 592 TATATTCATAATGATAATGATGAATGGTTTAATATGCTGAAGAGAATTTACTTAGTTGAG 651 Query 385 CAGAAAGGAGAGCTCTTTCTCATGTATACATGTAGCAGCGAGATACCGATGGTGTATAAA 444 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 652 CAGAAAGGAGAGCTCTTTCTCATGTATACATGTAGCAGCGAGATACCGATGGTGTATAAA 711 Query 445 CTTGTCTCCTCAAATTTGGAGGAGATGAATAGTA--CTACTCTTGACGGCGTGACAA 499 ||||||||||| | || ||||||||||| ||||| |||||||||||||| ||||| Sbjct 712 CTTGTCTCCTCGAGTTGGGAGGAGATGAGTAGTATTCTACTCTTGACGGCA-GACAA 767 > Ahg942887 jgi|Araly1|942887|scaffold_603431.1 Length=238 Score = 298 bits (161), Expect = 4e-80 Identities = 201/220 (91%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 527 CGAGATTGGATGTTCTTGGGATGAGGAACAGTGTGTACTTCCCAAAGTATGGTTTAGATT 586 ||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| || Sbjct 1 CGAGATTGGATGTTCTTGGTATGAAGAACAGTGTGTACTTCCCAAAGTATGGTTTACATG 60 Query 587 GCAAGGGATGTGTATCCTACTCGTTTGATGAAGCCAGGTACTATCCGCGTAAGCAG-TTC 645 |||| |||||||||||||||||||||||||||| ||||||||||||||||||||| || Sbjct 61 GCAAAGGATGTGTATCCTACTCGTTTGATGAAGGTAGGTACTATCCGCGTAAGCAGCTT- 119 Query 646 CCTAAACCAACAATGTGGCAAATGCAGAAAGAACTTTGCCCTCTTAGGAGTCTTTGGATC 705 || ||||||||||| || |||| |||||||||||| |||||||||||||||||||||||| Sbjct 120 CCAAAACCAACAATATGCCAAAAGCAGAAAGAACTATGCCCTCTTAGGAGTCTTTGGATC 179 Query 706 GAGCCACCGTCTAAGGACATCTTAGA-TGTGATAAAATGA 744 |||||||| | ||||||||||||||| | |||| |||||| Sbjct 180 GAGCCACCTTTTAAGGACATCTTAGACT-TGATGAAATGA 218 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 27410377323 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5