BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G10730.1
Length=2608
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489919 jgi|Araly1|489919|fgenesh2_kg.6__3053__AT4G10730.1 3736 0.0
Ahg945696 jgi|Araly1|945696|scaffold_701925.1 1482 0.0
> Ahg489919 jgi|Araly1|489919|fgenesh2_kg.6__3053__AT4G10730.1
Length=2543
Score = 3736 bits (2023), Expect = 0.0
Identities = 2419/2596 (93%), Gaps = 83/2596 (3%)
Strand=Plus/Plus
Query 35 aaaaacaaatcttcacaaggcaaaaaatccaaaatTGAGttttttttttcttcatttttt 94
||||||||| ||| ||||||||||||||||||||||||| ||| |||||||||| ||||
Sbjct 1 AAAAACAAAACTTTACAAGGCAAAAAATCCAAAATTGAG-TTTATTTTTCTTCA--TTTT 57
Query 95 ACAATGGTGTCTCGGTTTCGTCTTGCTCTAGAGGCTGTTTTGGGTTCGAGACGACGT--- 151
|||||||||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct 58 -CAATGGTGTCTCGGCTTCGTCTTGCTCTAGAGGCTGTTTTTGGTTCGAGACGACGTAAG 116
Query 152 AAGAAGATGGCGAGTACTAGTAgtggtggtggtggtggtggtgATAAGAAGAAGAAGAAA 211
|||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 117 AAGAAGATGGCGAGTACTAGTA------------GTGGTGGTGATAAGAAGAAGAAGAAA 164
Query 212 GGTTTCTCTGTAAACCCTAAAGATTATAAACTTATGGAAGAAGTTGGATATGGTGCTAGT 271
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 165 GGTTTCTCTGTAAACCCTAAAGATTATAAACTTATGGAAGAAGTTGGATATGGTGCTAGT 224
Query 272 GCTGTTGTTCATCGTGCTATTTATCTTCCTACTAATGAAGTTGTTGCTATCAAGTCTTTG 331
||||||||||||||||||||||||||||| || |||||||||||||||||||||| ||||
Sbjct 225 GCTGTTGTTCATCGTGCTATTTATCTTCCGACCAATGAAGTTGTTGCTATCAAGTGTTTG 284
Query 332 GATCTCGATCGCTGCAATAGTAATCTGGATGATATAAGGAGGGAGGCTCAGACTATGACT 391
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 285 GATCTCGATCGCTGCAATAGTAATCTGGATGATATAAGGAGGGAGGCTCAGACTTTGACT 344
Query 392 TTGATAGACCATCCGAATGTTATAAAGTCGTTTTGTTCGTTTGCTGTTGATCATCATCTA 451
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 345 TTGATAGACCATCCGAATGTTATAAAGTCGTTTTGTTCGTTTGCTGTTGATCATCATCTT 404
Query 452 TGGGTCGTTATGCCATTTATGGCTCAGGGTTCGTGTTTGCATCTAATGAAAGCAGCGTAT 511
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 405 TGGGTCGTCATGCCATTTATGGCTCAGGGTTCGTGTTTGCATCTAATGAAAGCAGCGTAT 464
Query 512 CCAGATGGATTTGAAGAGGCGGCTATATGTTCTATGCTGAAAGAAACACTTAAAGCTCTT 571
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 465 CCAGATGGATTTGAAGAGGCGGCTATATGTTCTATGCTGAAAGAAACACTTAAAGCTCTT 524
Query 572 GATTATCTTCATAGACAAGGGCATATCCATCGAGATGTTAAGGCTGGAAACATACTTCTT 631
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 525 GATTATCTTCATAGACAAGGGCATATCCATCGAGATGTTAAGGCTGGAAACATACTTCTT 584
Query 632 GATGACACTGGCGAGATTAAGTTAGGTGATTTTGGTGTCTCTGCATGTTTGTTTGACAAT 691
||||||||||| |||||||||||||||||||||||||| ||||| || ||||||||||||
Sbjct 585 GATGACACTGGTGAGATTAAGTTAGGTGATTTTGGTGTTTCTGCGTGCTTGTTTGACAAT 644
Query 692 GGCGATAGGCAACGTGCAAGAAATACATTTGTTGGTACTCCATGCTGGATGGCACCGGAA 751
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 645 GGCGATAGGCAACGTGCAAGAAACACATTTGTTGGTACTCCATGCTGGATGGCACCGGAA 704
Query 752 GTCTTGCAGCCAGGGAGTGGATACAATTCAAAGGCTGATATATGGTCTTTTGGAATAACG 811
|||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 705 GTCTTGCAGCCAGGGAGTGGATACGATTCAAAGGCTGATATCTGGTCTTTTGGAATAACA 764
Query 812 GCGCTGGAGTTGGCTCACGGTCATGCACCTTTCTCAAAATATCCCCCTATGAAGGTACTC 871
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 765 GCGTTGGAGTTGGCTCACGGTCATGCACCTTTCTCAAAATATCCCCCTATGAAGGTACTC 824
Query 872 TTAATGACTATCCAAAATGCACCACCTGGCCTTGATTATGACCGTGATAAGAAGTTTTCA 931
||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 825 TTAATGACTATTCAAAATGCACCACCTGGCCTTAATTATGACCGTGATAAGAAGTTTTCA 884
Query 932 AAGTCCTTTAAAGAATTGGTAGCATTGTGTCTGGTGAAAGATCAAACAAAAAGGCCAACT 991
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 885 AAGTCTTTTAAAGAATTGGTAGCATTGTGTCTGGTGAAAGATCAAACAAAAAGGCCGACT 944
Query 992 GCTGAAAAATTGTTGAAACACTCATTTTTCAAGAATGTGAAGCCTCCAGAGATCTGTGTa 1051
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 945 GCTGAAAAATTGTTGAAACACTCATTTTTCAAGAATGCAAAGCCTCCGGAGATCTGTGTG 1004
Query 1052 aaaaaaTTATTTGTCGATTTACCACCTCTTTGGACTCGCGTAAAAGCTCTTCAGGCCAAG 1111
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1005 AAAAAATTATTTGTCGATTTACCACCTCTTTGGACACGCGTAAAAGCTCTTCAGGCCAAG 1064
Query 1112 GATGCTGCACAGCTTGCTTTGAAAGGAATGGCCTCTGCTGACCAGGATGCTATATCACAG 1171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1065 GATGCTGCACAGCTTGCTTTGAAAGGAATGGCCTCTGCTGACCAGGATGCTATATCACAG 1124
Query 1172 AGTGAATACCAAAGAGGAGTAAGTGCTTGGAACTTCAATATCGAAGATTTGAAAGAACAA 1231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1125 AGTGAATACCAAAGAGGAGTAAGTGCTTGGAACTTCAATATCGAAGATTTGAAAGAACAA 1184
Query 1232 GCATCTTTGCTAGATGATGATGACATTCTAACAGAGAGTAGGGAAGAAGAAGAATCTTTT 1291
||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 1185 GCATCCTTGCTAGATGATGATGACATTTTAACAGAGAGTAGGGAAGAAGAAGAATCTCCT 1244
Query 1292 GGCGAACAGTTGCATAATAAGGTGAATGACAGAGGGCAAGTATCTGGTAGTCAATTGCTA 1351
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1245 GGCGAACAGTTGCATAATAAGGTGAATGACAGAGGGCAAGTATCTGGTAGTCAGTTGCTA 1304
Query 1352 TCTGAAAACATGAATGGAAAGGAAAAAGCTTCAGATACTGAGGTGGTAGAACCTATCTGT 1411
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1305 TCTGAAAACATGAATGGAAAGGAAAAAGTTTCAGATACTGAGGTGGTAGAACCTATCTGT 1364
Query 1412 GAAGAGAAATCCACTCTCAATTCAACCACTTCTTCTGTGGAACAACCGGCATCAAGTTCA 1471
||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||
Sbjct 1365 GAAGAGAAATCCACTCTCAATTCAACCGCTTCTTCTGTGGAACAAGCGGCACCAAGTTCA 1424
Query 1472 GAACAAGACGTTCCACAGGCCAAGGGTAAGCCAGTGAGACTCCAGACTCATAGTGGACCA 1531
|||||||| ||||||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 1425 GAACAAGATGTTCCACAGGCTAAGGGTAAGCCAGTGAGACGCCAGACTCATAGTGGACCA 1484
Query 1532 CTTTCATCCGGTGTCGTGTTAATCAATTCAGACTCAGAGAAGGTTCATGGTTATGAAAGG 1591
|||||||||||||| || ||||||| ||||||||||||||||| || |||||||||||||
Sbjct 1485 CTTTCATCCGGTGTTGTTTTAATCAGTTCAGACTCAGAGAAGGGTCCTGGTTATGAAAGG 1544
Query 1592 TCTGAGAGTGAACGGCAACTGAAATCATCAGTCCGGAGGGCACCCAGCTTTAGTGGTCCT 1651
||||||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||
Sbjct 1545 TCTGAGAGTGAACGGCAGCTGAAATCATCAGTCCGGAGAGCACCCAGCCTTAGTGGTCCT 1604
Query 1652 TTGAATCTTCCAAATCGTGCTTCAGCAAACAGTCTTTCAGCTCCTATCAAATCTTCTGGA 1711
|||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct 1605 TTGAATCTTCCAAATCGTGCTTCAGCGAACAGTTTTTCAGCTCCTATCAAATCTTCTGGA 1664
Query 1712 GGATT-TCGTGATTCTATAGATGACAAGTCGAAGGCTAATGTGGTTCAAATCAAAGGAAG 1770
||||| | |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1665 GGATTCT-GTGATTCTATAGATGACAAGTCGAAGACTAATGTGGTTCAAATCAAAGGAAG 1723
Query 1771 ATTTTCAGTAACATCAGAAAACTTGGATCTTGCAAGGGCATCCCCTTTGAGAAAATCTGC 1830
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1724 ATTTTCAGTAACATCAGAAAACTTGGATCTTGCAAGGTCATCCCCTTTGAGAAAATCTGC 1783
Query 1831 CAGTGTTGGGAATTGGATACTTGATTCTAAAATGCCAACGGGCCAGGCCATCAAGGAGTC 1890
|||||||||||||||||||||||||||||||||||||||||| || ||| |||||||||
Sbjct 1784 CAGTGTTGGGAATTGGATACTTGATTCTAAAATGCCAACGGGTCAACCCAGCAAGGAGTC 1843
Query 1891 AAGTAG-T--CAT-C-TCTC----ATTCATTATACCTCAGCTTCAAAATCTGTTCCAGCA 1941
|||||| | ||| | |||| ||||||| | ||||||||||||||||||||||||||
Sbjct 1844 AAGTAGCTATCATGCGTCTCCCTCATTCATTTTGCCTCAGCTTCAAAATCTGTTCCAGCA 1903
Query 1942 AAATTCAAT-GCAGCAGGATCTTATTATGAATCTAGTGAATACCTTACAACAAGCTGCTG 2000
|||||||| | ||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 1904 CAATTCAATAGT-GCAGGATCTTATTCTGAATCTAGTGAATAGCTTACAACAAGCTGCTG 1962
Query 2001 AAACAACAGATGGTTCTCAAAATGGAAAGTTGCCGCCTTTGCCTCGAGGATCTGACAGCA 2060
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1963 AAGCAACAGATGGTTCTCAAAATGGAAAGTTGCCGCCTTTGCCTCGAGGATCTGACAGCA 2022
Query 2061 ATGGAACCGTTGTAGAACTTACAGCAGCTGAGCGAGAGAGGTTACTACTTACCAAGATAA 2120
||||||||||||| ||||||||||| ||||||||||||||||||| || ||||||||||
Sbjct 2023 ATGGAACCGTTGTTGAACTTACAGCTTCTGAGCGAGAGAGGTTACTCCTCACCAAGATAA 2082
Query 2121 CCGAGCTTCGAGCTAGGATGAAAGAGTTGACGGAAGAACTTGAAGTAGAAAAATCAAAAC 2180
||||||||||||||||||||||||||||||| || ||||| ||| ||||||||| |||
Sbjct 2083 CCGAGCTTCGAGCTAGGATGAAAGAGTTGACAGAGGAACTCGAAAAAGAAAAATCGAAAG 2142
Query 2181 AGACCCAACTGCAGCAGAAATTGAAATCAGTCACCGGTCGCGAGCAATTGTAATCAGAGA 2240
|||| ||||||||||||||||||||||||||||||||||| ||||||||||||| || ||
Sbjct 2143 AGACTCAACTGCAGCAGAAATTGAAATCAGTCACCGGTCGTGAGCAATTGTAAT-AG-GA 2200
Query 2241 CCGGGAACACTGACCTTACTACAGAGAAGCTTTTTAGGAGGAGAGAAAAGTATGTTTTGT 2300
| | | | | || || | || | | || ||| ||| |||| ||||||
Sbjct 2201 --G--A-C-CGG---TT--TA--G-GA-G------A--AG-AGA-AAA-GTATATTTTGT 2234
Query 2301 ACACTAAGAAAACCAGAG-AGCTCTCTGATCATGAAAGCAAAAA-GGACAGGTTTGGTTC 2358
|||||||||||||||||| | ||||||||||||||||||||||| |||||||||||||||
Sbjct 2235 ACACTAAGAAAACCAGAGTAACTCTCTGATCATGAAAGCAAAAAAGGACAGGTTTGGTTC 2294
Query 2359 TGTTCTGTATAAGTGCAGAAGCAGAGTCACCATCGGCCATTTGTTTCTGACAGAAGAAGC 2418
|||||||||||||||||||||||||| || || |||||||||||||||||||||||||||
Sbjct 2295 TGTTCTGTATAAGTGCAGAAGCAGAGACATCAACGGCCATTTGTTTCTGACAGAAGAAGC 2354
Query 2419 CGGAAACAAAAACAGATAGAGAGAGATAAATAGAGAAGAAAGCTCTTTGGCCATGGAAAA 2478
|||||||||| || ||||||| | ||||||||||||||||||||| || |||||||||
Sbjct 2355 CGGAAACAAA--CATATAGAGA-A--TAAATAGAGAAGAAAGCTCTT-GGTCATGGAAAA 2408
Query 2479 -TTGTATTTGTTTATTTAATCTAAACACT---ACAAAACTTTACATTTT-T-T-ATT--- 2528
|||||||||||||||||||||||| | | ||||||||||||||| | | |||
Sbjct 2409 ATTGTATTTGTTTATTTAATCTAAATTTTTTTATAAAACTTTACATTTTGTATTATTTGT 2468
Query 2529 -A-TTGTTAGCAACAAATATAGACTCTTCCTTTTTTGTGTGGATTGTAAATGAAACATTA 2586
| ||||||||| | |||||||||||||| ||||||||| | |||||||||||||| |||
Sbjct 2469 TACTTGTTAGCAGCTAATATAGACTCTTC-TTTTTTGTG-G-ATTGTAAATGAAACGTTA 2525
Query 2587 TTTGATGTATTTGTTT 2602
|||||| |||||||||
Sbjct 2526 TTTGATATATTTGTTT 2541
> Ahg945696 jgi|Araly1|945696|scaffold_701925.1
Length=2179
Score = 1482 bits (802), Expect = 0.0
Identities = 1383/1657 (83%), Gaps = 66/1657 (4%)
Strand=Plus/Plus
Query 180 gtggtggtggtggtgATAAGAAGAAGAAGAAAGGTTTCTCTGTAAACCCTAAAGATTATA 239
||||||||||| ||| |||| || || || |||||||||| | || |||||||||||||
Sbjct 64 GTGGTGGTGGTAGTGGTAAGCAGCAG-AG--AGGTTTCTCTTTGAATCCTAAAGATTATA 120
Query 240 AACTTATGGAAGAAGTTGGATATGGTGCTAGTGCTGTTGTTC-ATCGTGCTATTTATCTT 298
| ||| |||||||| | || |||| ||||| ||||||| || |||| || || |||||
Sbjct 121 AGCTTTTGGAAGAAATAGGCCATGGAGCTAGCGCTGTTG-TCTATCGAGCGATCTATCTC 179
Query 299 CCTACTAATGAAGTTGTTGCTATCAAGTCTTTGGATCTCGATCGCTGCAATAGTAATCTG 358
|| ||||||||||| || || ||||||| |||||||||||||||||||||||| ||||||
Sbjct 180 CCGACTAATGAAGTCGTCGCCATCAAGTGTTTGGATCTCGATCGCTGCAATAGCAATCTG 239
Query 359 GATGATATAAGGAGGGAGGCTCAGACTATGACTTTGATAGACCATCCGAATGTTATAAAG 418
|||||||| |||||||| |||||||||||| ||||||||||||||| || |||||||||
Sbjct 240 GATGATATTAGGAGGGAATCTCAGACTATGAGTTTGATAGACCATCCCAACGTTATAAAG 299
Query 419 TCGTTTTGTTCGTTTGCTGTTGATCATCA-TCTATGGGTCGTTATGCCATTTATGGCTCA 477
||||||||||| ||| |||| || || || ||| ||||| ||||||||||| ||||| ||
Sbjct 300 TCGTTTTGTTCATTTTCTGTCGACCA-CAGTCTTTGGGTTGTTATGCCATTCATGGCGCA 358
Query 478 GGGTTCGTGTTTGCATCTAATGAAAG-CAGCGTATCCAGATGGATTTGAAGAGGCGGCTA 536
||||| ||||||||||| ||| ||| | || ||| |||| |||||||||||| ||||||
Sbjct 359 AGGTTCATGTTTGCATCTTATG-AAGACTGCATATTCAGACGGATTTGAAGAGTCGGCTA 417
Query 537 TATGTTCTATGCTGAAAGAAACACTTAAAGCTCTTGATTATCTTCATAGACAAGGGCATA 596
| |||| | | || |||||||| ||||||||||||||||||||||||| |||||| ||||
Sbjct 418 TTTGTTGTGTACTTAAAGAAACTCTTAAAGCTCTTGATTATCTTCATAAACAAGGCCATA 477
Query 597 TCCATCGAGATGTTAAGGCTGGAAACATACTTCTTGATGACACTGGCGAGATTAAG-TTA 655
||||||| ||||| |||||||||||||||||||||||||||| ||| ||||||||| ||
Sbjct 478 TCCATCGGGATGTGAAGGCTGGAAACATACTTCTTGATGACAGTGGTGAGATTAAGCTT- 536
Query 656 GGTGATTTTGGTGTCTCTGCATGTTTGTTTGACAATGGCGATAGGCAACGTGCAAGAAAT 715
|| |||||||| |||||||| || ||||||||||| || ||||||| ||||||||||||
Sbjct 537 GGCGATTTTGGCGTCTCTGCTTGCTTGTTTGACAACGGTGATAGGCGACGTGCAAGAAAC 596
Query 716 ACATTTGTTGGTACTCCATGCTGGATGGCACCGGAAGTCTTGCAGCCAGGGAG-TGGATA 774
||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||
Sbjct 597 ACATTTGTTGGTACTCCTTGCTGGATGGCACCGGAAGTCTTGCAGCC-GGGAGAAGGATA 655
Query 775 CAATTCAAAGGCTGATATATGGTCTTTTGGAATAACGGCGCTGGAGTTGGCTCACGGTCA 834
|||||| ||||||||||| ||||| ||||| ||||| || || || |||| || |||||
Sbjct 656 CAATTCCAAGGCTGATATCTGGTCATTTGGTATAACAGCTCTTGAACTGGCCCATGGTCA 715
Query 835 TGCACCTTTCTCAAAATATCCCCCTATGAAGGTACTCTTAATGACTATCCAAAATGCACC 894
|||||||||||||||||||||||| |||||||| ||| |||||||||| ||||| |||||
Sbjct 716 TGCACCTTTCTCAAAATATCCCCCCATGAAGGTGCTCCTAATGACTATTCAAAACGCACC 775
Query 895 ACCTGGCCTTGATTATGACCGTGATAAGAAGTTTTCAAAGTCCTTTAAAGAATTGGTAGC 954
||||| ||||||||||| ||||||||||| ||||| ||||||||||||||| |||| ||
Sbjct 776 TCCTGGTCTTGATTATGATCGTGATAAGAAATTTTCGAAGTCCTTTAAAGAAATGGTTGC 835
Query 955 ATTGTGTCTGGTGAAAGATCAAACAAAAAGGCCAACTGCTGAAAAATTGTTGAAACACTC 1014
| ||||| |||||||||||||||||||||||||||||||||||||| || |||| |||||
Sbjct 836 AATGTGTTTGGTGAAAGATCAAACAAAAAGGCCAACTGCTGAAAAACTGCTGAAGCACTC 895
Query 1015 ATTTTTCAAGA-ATGTGAAGCCTCCAGAGATCTGTGTaaaaaaaTTATTTGTC-GATTTA 1072
|| |||||| | | ||||||||||||| | | ||| |||||||||||| || ||||||
Sbjct 896 ATGTTTCAA-ACACACGAAGCCTCCAGAGCTTTCTGTGAAAAAATTATTT-TCCGATTTA 953
Query 1073 CCACCTCTTTGGACTCGCGTAAAAGCTCTTCAGGCCAAGGATGCTGCA-CAGCTTGCTTT 1131
|||||||||||||| || |||||| ||||||||| ||||||||| || |||||||| ||
Sbjct 954 CCACCTCTTTGGACACGAGTAAAATCTCTTCAGGATAAGGATGCT-CAACAGCTTGCATT 1012
Query 1132 GAAAG-GAATGGCCTCTGCTGACCAGGATGCTATATCACAGAGTGAATACCAAAGAGGAG 1190
|||| |||||||| |||||||| |||| |||||||||||||| ||||||||||||||||
Sbjct 1013 -AAAGAGAATGGCCACTGCTGACGAGGAAGCTATATCACAGAGCGAATACCAAAGAGGAG 1071
Query 1191 TAAGTGCTTGGAACTTCAATATC-GAAGATTTGAAAGA-ACAAGCATCTTTGCTAGAT-G 1247
| || |||||||| || | || || || |||||| | ||||||||||||| || || |
Sbjct 1072 TGAGCGCTTGGAATTTTGACGTCAGA-GACTTGAAA-ACACAAGCATCTTTGTTA-ATTG 1128
Query 1248 ATGATGAC-ATTCTA-ACAGAGAGTAGGGAAGAAGAAGAA-TCTTTTG-GCGAACAGTTG 1303
||||||| || ||| | |||||||| |||||| || ||| | || || || | |||||
Sbjct 1129 ATGATGATGAT-CTAGA-AGAGAGTAAGGAAGATGATGAAATATTATGTGC-A-CAGTT- 1183
Query 1304 CATAATAAGGTGAATGACAGAGGGCAAGTATCTGGTAGTCAATTGCTATCTGAAAACATG 1363
|||||||||||||||||||| |||||||| || ||||| |||| ||||| ||||
Sbjct 1184 --TAATAAGGTGAATGACAGAGTGCAAGTATTTGATAGTCTGCAACTATATGAAACCATG 1241
Query 1364 AATGGAAAGGAAAAAGCTTC-AGATACTGAGGTGGTAGAACCTATCTGTGAAGAGAAATC 1422
|| | ||| ||||| | ||| | |||||||||||| |||||| | ||| ||||||||||
Sbjct 1242 AACGAAAAAGAAAAGGTTTCCA-ATACTGAGGTGGAAGAACCAACCTGCGAAGAGAAATT 1300
Query 1423 CACTCTCAATT-CAACCACTTCTTCTGTGGAAC-AACCGGCATCAAGTTCAGAACAAGAC 1480
|||| ||| || |||| |||||||| | |||| || | || ||| |||||| || |||
Sbjct 1301 CACTTTCA-TTACAACTGCTTCTTCTTTAGAACGAAT-GTCACCAAATTCAGAGCATGAC 1358
Query 1481 GTTCCACAGGCCAAGGGTAAGCCAGTGAGACTCCAGA-CTCATAGTGGACCACTTTCATC 1539
|||| ||||||||| ||||||||| |||| ||| | | || |||||||||||| ||
Sbjct 1359 ATTCCTGAGGCCAAGGTTAAGCCAGTAAGACGCCAAAGC-CAGAGTGGACCACTTACAAG 1417
Query 1540 CGGTGTC-GTGTTAATCAATTCAGACT-CAGAGAA-GGTTCATGG-TTATGAAAGGTCTG 1595
| | | || |||| | | |||| || |||| || || ||| || |||||| || |
Sbjct 1418 CAA-GACCGTATTAAGCCACTCAG-CTTCAGAAAAAGGG-CATATCTT-TGAAAGATCCG 1473
Query 1596 AGAGTGAACGGCA-ACTGAAATCATCAGTCCGGAGGGCACCCAGCTTTAGTGGTCCTTTG 1654
||||||||| ||| || | | ||| ||||||| || ||||||||||||||||||||||||
Sbjct 1474 AGAGTGAACAGCAGACAGCA-TCAACAGTCCGAAGAGCACCCAGCTTTAGTGGTCCTTTG 1532
Query 1655 AATCTTCCAAATCGTGCTTCAGCAAACAGTCTT-TCAGCTCCTATCAAAT-CTTCTGGAG 1712
|||||||||| |||||||| |||||||| || |||||||| || |||| || | ||||
Sbjct 1533 AATCTTCCAACCCGTGCTTCTTCAAACAGT-TTGTCAGCTCCCATTAAATACT-CAGGAG 1590
Query 1713 GATTTCGTGATTCTATAGATGACAAGTCGAAGGCTAATGTGGTTCAAATCAAAGGAAGAT 1772
|||| ||||||||| | ||||| ||||| ||||||||| ||||||| | || ||| |||
Sbjct 1591 GATTCCGTGATTCTCTGGATGATAAGTCAAAGGCTAATCTGGTTCAGA--AA-GGACGAT 1647
Query 1773 TTTCAGTAACATCAGAAAACT-TGGATCTTGC-AAGG 1807
||||||||||||||| ||| | | |||||||| ||||
Sbjct 1648 TTTCAGTAACATCAGGAAA-TGTAGATCTTGCGAAGG 1683
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98349012590
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5