BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G10740.1
Length=1284
Score E
Sequences producing significant alignments: (Bits) Value
Ahg352144 jgi|Araly1|352144|fgenesh1_pg.C_scaffold_6002737 990 0.0
Ahg908078 jgi|Araly1|908078|Al_scaffold_0002_1159 824 0.0
Ahg925743 jgi|Araly1|925743|scaffold_201304.1 761 0.0
Ahg925736 jgi|Araly1|925736|scaffold_201297.1 202 6e-51
Ahg930411 jgi|Araly1|930411|scaffold_302868.1 176 3e-43
Ahg479757 jgi|Araly1|479757|fgenesh2_kg.3__2458__AT3G22421.1 154 2e-36
Ahg482868 jgi|Araly1|482868|fgenesh2_kg.4__1928__AT2G38590.1 104 2e-21
Ahg342698 jgi|Araly1|342698|fgenesh1_pg.C_scaffold_3002461 75.0 1e-12
> Ahg352144 jgi|Araly1|352144|fgenesh1_pg.C_scaffold_6002737
Length=1365
Score = 990 bits (536), Expect = 0.0
Identities = 837/978 (86%), Gaps = 37/978 (4%)
Strand=Plus/Plus
Query 1 ATGAGGACGACAATGTCAAATCTTCCAAAGGAACTAG-TAGAGGACATTGTCTCTAGGGT 59
|||| |||||| ||||||||||||||||| | | | | |||| || ||||||||||||||
Sbjct 1 ATGACGACGACGATGTCAAATCTTCCAAATG-ATTTGTTAGAAGAGATTGTCTCTAGGGT 59
Query 60 TCCTTTACATTGTTTGAGAGCAA-TGCGATTAACTTGCAAAAACTGGAATGCTTTGTT-A 117
|||| || | | | ||||| || || ||||||| |||||||| |||||||||||||| |
Sbjct 60 TCCTCTAAAATCTATGAGA-AAAGTGAGATTAACATGCAAAAAATGGAATGCTTTGTTCA 118
Query 118 GAAAGCCAGAGCTTTAAGAAGATGCACATACGGAAAGAAGAAGAAGCAGCAAGGGAATTA 177
|||||| ||| |||| ||||||||| || ||||||||||||||||| ||| |||||||
Sbjct 119 -AAAGCCGGAGTTTTACGAAGATGCATATTGGGAAAGAAGAAGAAGCATCAAAGGAATTA 177
Query 178 GGAGAGAATCGAATGATTGTGATGATGGATTACAACGTTTATTTAATGGGCATCATCGTC 237
||||||| ||| ||||| ||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 178 GGAGAGACTCGGATGATCGTGATGATGGATTGCAATGTTTATTTAATGGGCATCATCGTC 237
Query 238 AACGAAAA-CCTATCCATAAAGTCTCTAGGTAAACTTACTTGCCTACATGGTTCTA-AAC 295
|| ||||| || ||||||| ||||| |||||||||||||||| ||||||| ||| | |||
Sbjct 238 AATGAAAATCC-ATCCATAGAGTCTTTAGGTAAACTTACTTGTCTACATGATTC-AGAAC 295
Query 296 AAGTCAAGATATCTCAAGTCTTTCATTGTGAGGGTTTATTATTATGCATCTTAAAAGACG 355
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 296 AAGTCAAGATATCTCAAGTCTTTCATTGTGAGGGTTTATTACTATGCATCTTAAAAGTTG 355
Query 356 ATGATACTAAGATTGTGGTTTTGAATCCGTATTTGGGGCAAACAAGGTGGATCCAAACCA 415
|| |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct 356 ATAATACTAAGATTGTGGTTTGGAATCCGTATCTGGGGCAAACAAGGTGGATCCAAACCG 415
Query 416 GAAAGTATCACCGTACAAGTGAATGGG-AAGGACGAGATGTTTATAACTATGCTCTCCGA 474
||||| || ||| | |||||| ||||| || || ||||||||| || || |||||| ||
Sbjct 416 GAAAGCATTACCATGCAAGTGGATGGGTAA-CACTAGATGTTTACAATTACGCTCTCGGA 474
Query 475 TACGAAACTAACAGTGGAAACCGTAGCCCCAAAATCTTGAGGTTTATAGATGATTTCCAT 534
||||||| ||| |||| ||| ||||||| ||||||||||||||||| | | |||||||||
Sbjct 475 TACGAAAATAATAGTGAAAATCGTAGCCTCAAAATCTTGAGGTTTACAAAAGATTTCCAT 534
Query 535 CACCAC---CCCGAAAACCCCGCTTTACGATATGAAACCTACGATTTTGATACTGATTTA 591
| ||| ||||||||| ||||||| | ||||||| ||| ||||||||||||||||||
Sbjct 535 TATCACTTTCCCGAAAACGTCGCTTTATGGTATGAAATCTATGATTTTGATACTGATTTA 594
Query 592 TGGACTACTCTTGATGTCTCTCCACACTGGCGGATAATATCTCGCTGTGGTGGTGTTTCT 651
|||||||||||||||||||||||||||||||||||||||||| ||||||| | || ||
Sbjct 595 TGGACTACTCTTGATGTCTCTCCACACTGGCGGATAATATCTAACTGTGGTC-T-TT-CT 651
Query 652 CTTAATGGAAACACTTATTGGGGCGCTGTAGAACGAAACGCATCTGCATATATTGGTCAT 711
|| || ||||||||||| ||||||||||||||||| || ||||| ||| || |||
Sbjct 652 CTCAAGGGAAACACTTACTGGGGCGCTGTAGAACGGAATGCATCCGCACAT------CAT 705
Query 712 ATGATCTGCTTTGATTTTACAAGAGG-AGGATTTGGACCGCTTATACCTCTGCCGTTTAA 770
|| || || ||||||||||||| ||| || ||||||||||||| ||||||||||||||||
Sbjct 706 ATAATTTGTTTTGATTTTACAATAGGGAG-ATTTGGACCGCTTCTACCTCTGCCGTTTAA 764
Query 771 GGCTAGGGGTTTAGTTTTTGCGCCACTATCTTCGGATAGAGCA-GAGAAGATCGCGGCTT 829
||| ||||||| || ||||| |||||||||||||| ||||| | ||||||||||| ||||
Sbjct 765 GGCGAGGGGTTCAGATTTTGTGCCACTATCTTCGGTTAGAG-ATGAGAAGATCGCAGCTT 823
Query 830 TATTTCGGACAAGCAAAAAGGTTGTGATATGGATTACGACTAAGATTGATG---CCACAA 886
|||||||| ||||| ||||||||| |||||||||||||||||| ||||||| ||| ||
Sbjct 824 TATTTCGGGCAAGCGAAAAGGTTGAGATATGGATTACGACTAATATTGATGATGCCAAAA 883
Query 887 ATGTAACTTGGAGCAA-TTTCTTCACAATATATATATCGA-ACCTTGAGC-GAAATCTTT 943
|||| | |||||||| ||| || ||| || ||||| | | ||||||| | ||| |||||
Sbjct 884 ATGTGTCCTGGAGCAAGTTTGTT-ACACTAAATATACC-ATACCTTGACCAGAA-TCTTT 940
Query 944 CATGTAAGAGTTTCTTCA 961
||| |||||||||| |||
Sbjct 941 CATATAAGAGTTTCCTCA 958
> Ahg908078 jgi|Araly1|908078|Al_scaffold_0002_1159
Length=1608
Score = 824 bits (446), Expect = 0.0
Identities = 786/944 (83%), Gaps = 47/944 (5%)
Strand=Plus/Plus
Query 46 ATTGTCTCTAGGGTT-CCTTTACATTGTTTGAGAGCAATGCGATTAACTTGCAAAAACTG 104
|||||||||| |||| |||| | ||| | ||||| || |||||||||||||||||| ||
Sbjct 457 ATTGTCTCTATGGTTCCCTTGAAATT-TATGAGATCAGTGCGATTAACTTGCAAAAGGTG 515
Query 105 GAATGCTTTGTT-AGAAAGCCAGAGCTTTAAGAAGATGCACATACGGAAAGAAGAAGAAG 163
||| | |||||| | |||||| |||||||| |||||||||||| || | |||||| ||
Sbjct 516 GAACGGTTTGTTCA-AAAGCCGGAGCTTTATGAAGATGCACAT--TGACA-AAGAAGCAG 571
Query 164 CAGCAAGGGAATTAGGAGAGAATCGAATGATTGTGATGATGGATTACAACGTTTATTTAA 223
|||||||||||||||| |||| ||| ||||| ||||||||||||||||| ||||||||||
Sbjct 572 CAGCAAGGGAATTAGGGGAGACTCGGATGATCGTGATGATGGATTACAATGTTTATTTAA 631
Query 224 TGGGCATCATCGTCAACGAAAA-CCTATCCATAAAGTCTCTAGGTAAACTTACTTGCCTA 282
|||| || ||||||| ||||| | ||||| | ||||||||||||||||||||||||||
Sbjct 632 TGGGAATTGTCGTCAATGAAAATAC-ATCCACAGAGTCTCTAGGTAAACTTACTTGCCTA 690
Query 283 CATGGTTCTA-AACAAGTCAAGATATCTCAAGTCTTTCATTGTGAGGGTTTATTATTATG 341
| | ||| | |||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 691 GACGATTC-AGAACAAGTCAAGATATCTCAAGTCTTTCATTGTGACGGTTTATTGTTATG 749
Query 342 CATCTTAAAAGACGATGATACTAAGATTGTGGTTTTGAATCCGTATTTGGGGCAAACAAG 401
|||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 750 CATCTTGAAAGACGATGATACTAAGATTGTGGTTTGGAATCCGTATTTGGGGCAAACAAG 809
Query 402 GTGGATCCAAACCAGAAAGTATCACCGTACAAGTGAATGGGAAGGACGAGATGTTTATAA 461
||||||||||||||||||||| |||| | ||| ||| ||||||||||| |||| |
Sbjct 810 ATGGATCCAAACCAGAAAGTATTACCGCGCTGGTGGCTGGAAAGGACGAGATATTTACAT 869
Query 462 CTATGCTCTCCGATACGAAACTAACAGTGGAAA-C----C--GT---AGCCCCAAAATCT 511
|| |||||| ||| | ||| ||| || ||| | | || |||||||||||||
Sbjct 870 GTACGCTCTCGGATTCAAAAATAATAGCA-AAAGCAGATCTTGTCGCAGCCCCAAAATCT 928
Query 512 TGAGGTTTATAGATGATTTCCATCACCACCCCGAAAACCCCGCTTTACGATATGAAACCT 571
|||||||||||||||||||| | | | ||||| || ||||||||||| ||||||| ||
Sbjct 929 TGAGGTTTATAGATGATTTCAAACTTCGGCCCGAGAATCCCGCTTTACGGTATGAAATCT 988
Query 572 ACGATTTTGATACTGATTTATGGACTACTCTTGATGTCTCTCCACACTGGCGGATAATAT 631
||||||||||| ||||||||||||| |||||||||||||||||||||||||| ||||| |
Sbjct 989 ACGATTTTGATTCTGATTTATGGACCACTCTTGATGTCTCTCCACACTGGCGTATAATGT 1048
Query 632 CTC-GCTGTGGTGGTGTTTCTCTTAATGGAAACACTTATTGGGGCGCTGTAGAACGAAAC 690
||| || |||| | || |||| || ||||||||||| ||||| ||||||||||| ||
Sbjct 1049 CTCAGC-GTGGCC-T-TT-CTCTCAAGGGAAACACTTACTGGGGTGCTGTAGAACGGAAT 1104
Query 691 GCAT-CTGCATATATTGGTCATATGATCTGCTTTGATTTTACAAGAG-GAGGATTTGGAC 748
| || | ||| |||| ||||||| ||||| |||||||||||||||| ||| ||||||||
Sbjct 1105 GAATAC-GCACCTATTAGTCATATAATCTGTTTTGATTTTACAAGAGAGAG-ATTTGGAC 1162
Query 749 CGCTTATACCTCTGCCGTTTAAG-GCTAGGGGTTTAGTTTTTGCGCCACTATCTTCGGAT 807
||||| | |||||||| |||| | ||| ||||| || |||||| |||||||||||| |
Sbjct 1163 CGCTTTTGCCTCTGCCATTTA-GTGCTTGGGGTGCAGAGTTTGCGTCACTATCTTCGGTT 1221
Query 808 AGAGCAGAGAAGATCGCGGCTTTATTTCGGACAAGC-AAA-A---AGGTT-GTGATATGG 861
|||| |||||||||||| |||||||||| ||||||| ||| | | ||| | |||||||
Sbjct 1222 AGAGAAGAGAAGATCGCTGCTTTATTTCAGACAAGCGAAACATTTAAGTTTGAGATATGG 1281
Query 862 ATTACGACTAAGATTGATGCC-ACAAATGTAACTTGGAGCA-ATTTCTTCACAATATATA 919
||||| ||||||||||| || | |||||| | ||||||| ||| ||||||||| |||
Sbjct 1282 ATTACAACTAAGATTGAGGCTGA-AAATGTGTCGTGGAGCAGATT-CTTCACAATGGATA 1339
Query 920 TATCGA-ACCTTGAGC-GAAATCTTTCATGTAAGAGTTTCTTCA 961
||| | ||||||| | | || || |||| ||||||||||||||
Sbjct 1340 CATC-ATACCTTGA-CAGTAAGCTCTCATATAAGAGTTTCTTCA 1381
Score = 237 bits (128), Expect = 2e-61
Identities = 242/293 (83%), Gaps = 23/293 (8%)
Strand=Plus/Plus
Query 955 TTCTTCACAATATATATATCGA-ACCTTGAGC-GAAATCTTTCATGTAAGAGTTTCTTCA 1012
||||||||||| ||| ||| | ||||||| | | || || |||| ||||||||||||||
Sbjct 1324 TTCTTCACAATGGATACATC-ATACCTTGA-CAGTAAGCTCTCATATAAGAGTTTCTTCA 1381
Query 1013 TTGAC-ATGGAGAAGAAAGTTGCTATGGTTTTTGATaaagaaaaaggaaaaa-aa-GT-C 1068
||||| | |||||||||||||||| ||||||||| ||| || ||||||||| || | |
Sbjct 1382 TTGACGA-GGAGAAGAAAGTTGCTGTGGTTTTTG--AAA-AAGAAGGAAAAACAATATGC 1437
Query 1069 G--CTCA--CA--ACATTATTAATATCATTGGAGAGGCTGGATGCGTGAGGAAATTGGTT 1122
| |||| || ||| ||| |||||||||||||||| ||||||| | | ||||||||
Sbjct 1438 GACCTCACTCATGACACTATAAATATCATTGGAGAGGATGGATGCATAATGAAATTGGAG 1497
Query 1123 CTTAAAGAATCTGGAGACAAAAGCTGTTGGCCACTTGTGTGCTCTTATGTTCCAAGTACA 1182
||| |||| | | |||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 1498 CTTGGAGAACCCGCAGACAAAAACTGTTGGCCACTTGTGTGCTCTTATGTTCCAAGTGTA 1557
Query 1183 GTGCAAATCAAGCAACATAATAG-AGGCAAAAGGCaaa-aa-aaaGTGATTAG 1232
||||||||||||| |||||| || |||||||||| ||| || |||| ||||||
Sbjct 1558 GTGCAAATCAAGCTACATAA-AGGAGGCAAAAGG-AAAGAACAAAGCGATTAG 1608
> Ahg925743 jgi|Araly1|925743|scaffold_201304.1
Length=1229
Score = 761 bits (412), Expect = 0.0
Identities = 802/982 (82%), Gaps = 60/982 (6%)
Strand=Plus/Plus
Query 13 ATGTCAAATCTTCCAAAGGAACTAGTAGAGGACATTGTCTCTAGGGTTCCTTT-ACATTG 71
|||||||||||||||||||| | |||||||| ||| |||| ||||||||||| | | ||
Sbjct 31 ATGTCAAATCTTCCAAAGGATTTGGTAGAGGAGATTATCTCAAGGGTTCCTTTGA-AATG 89
Query 72 TTTGAGAGCAATGCGATTAACTTGCAAAAACTGGAATGCTTTGTT-AGAAAGCCAGAGCT 130
||||||| |||| ||||||||||||||||| ||||| |||||||| | |||||| |||||
Sbjct 90 TTTGAGATCAATACGATTAACTTGCAAAAAGTGGAACGCTTTGTTCA-AAAGCCGGAGCT 148
Query 131 TTAAGAAGATGCACA-T-ACGGAAAGAAGAAG-AAGCAGCAAGGGAATTAGGAG-AGAAT 186
||| || |||||||| | || |||||||||| || || ||||||||||||| | ||| |
Sbjct 149 TTACGACGATGCACATTGAC--AAAGAAGAAGCAA-CATCAAGGGAATTAGG-GCAGACT 204
Query 187 CGA-ATGATTGTGATGATGGATTACAACGTTTATTTAATGGGCATCATCGTCAACGAAAA 245
| | ||||| ||||||||||||||||| ||||||||||||||||| || || | |||||
Sbjct 205 C-AGATGATCGTGATGATGGATTACAATGTTTATTTAATGGGCATGGTCCTCGATGAAAA 263
Query 246 -CCTATCCATAA-AGTCTCTAGGTAAACTTACTTGCCTACATGGTTCTAAACAAGTCAAG 303
||| |||| || ||| |||||||||||||||||||||| ||| | | ||||||||||||
Sbjct 264 TCCT-TCCA-AAGAGTTTCTAGGTAAACTTACTTGCCTAGATGATACAAAACAAGTCAAG 321
Query 304 ATATCTCAAGTCTTTCATTGTGAGGGTTTATTATTATGCATCTTAAAAGACGATGATACT 363
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 322 ATATCTCAAGTCTTTCATTGTGAGGGTTTATTGTTATGCATCTTGAAAGACGATGATACT 381
Query 364 AAGATTGTGGTTTTGAATCCGTATTTGGGGCAAACAAGGTGGATCCAAACCAGAAAGTAT 423
||||||||||||| |||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct 382 AAGATTGTGGTTTGGAATCCGTATTTGGGGCAAACAAGATGGATCCAAACCAGAATGTAT 441
Query 424 CACCGTACAAGTGAATGGGAAGGACGAGATGTTTATAACTATGCTCTCCGATACGAAACT 483
|| | | |||| |||| |||||||| | | | | || |||||| ||||||||| |
Sbjct 442 GACGGCGCTAGTGGATGGAAAGGACGAAA-G---A-AG-TACGCTCTCGGATACGAAAAT 495
Query 484 AACAGTGGAAAC----C-----GTAGCCCCAAAATCTTGAGGTTTATAGATGATTTCCAT 534
|| |||| |||| | |||||||||||||||||||| |||||||| ||||| |
Sbjct 496 AATAGTGAAAACAGATCTTCTTGTAGCCCCAAAATCTTGAGGGTTATAGATAATTTCAAC 555
Query 535 CACCACCCCGAAAACCCCGCTTTACG-ATATGAAACCTACGATTTTGATACTGATTTATG 593
| | || ||||| || |||| | |||||||| ||| ||||||||| ||||||||||
Sbjct 556 CTTTTCACCAAAAACACCATTTTA-GTATATGAAATCTATGATTTTGATTCTGATTTATG 614
Query 594 GACTACTCTTGATGTCTCTCCACACTGGCGGATAATATCTCG-CTGTGGTGGTGTTTCTC 652
|||||||||||||||||||||||| ||| | |||| |||| | | || | || |||
Sbjct 615 GACTACTCTTGATGTCTCTCCACAATGGTGTATAAGGTCTCAAC-GAGGCC-T-TT-CTC 670
Query 653 TTAATGGAAACACTTATTGGGGCGCTGTAGAACGAAACGCAT-CTGCATATATTGGTCAT 711
| || ||||||||||| ||||| ||| |||||| |||| | | | |||| ||||
Sbjct 671 TCAAGGGAAACACTTACTGGGGTGCTAAAGAACGGCGCGCACACGG-ACCCATTGATCAT 729
Query 712 ATGATCTGCTTTGATTTTACAAGAG-GAGGATTTGGACCGCTTATACCTCTGCCGTTTAA 770
|| || || |||||||||||||||| ||| ||||||||||||| | |||||||| ||||
Sbjct 730 ATAATTTGTTTTGATTTTACAAGAGAGAG-ATTTGGACCGCTTCTGCCTCTGCCATTTA- 787
Query 771 G-GCTAGGGGTTTA-GTTTTTGCGCCACTATCTTCGGATAGAGCAGAGAAGATCGCGGCT 828
| ||| ||||| | | ||| ||| |||||||||||| ||||| ||| |||||| | |||
Sbjct 788 GTGCTTGGGGTGCACGGTTT-GCGTCACTATCTTCGGTTAGAGAAGAAAAGATCACTGCT 846
Query 829 TTATTTCGGACAAGC-AAA-A-AGG--TT-GTGATATGGATTACGACTAAGATTGATGCC 882
||||||| || |||| ||| | | || | ||||||||||||||||| |||||| |||
Sbjct 847 TTATTTCAGAAAAGCGAAACATATAAATTTGAGATATGGATTACGACTACGATTGAGGCC 906
Query 883 A-CAAATGTAACTTGGAGCAATTTCTTCACAATATATATATCGA-ACCTTGAGCGAAAT- 939
| ||| ||| || ||||||||||||||||| || ||| || | ||||||| | ||||
Sbjct 907 AACAA-TGTGACGTGGAGCAATTTCTTCACGATGGATACATT-ATACCTTGACC-AAATG 963
Query 940 CTTTCATGTAAGAGTTTCTTCA 961
|||| || ||||||||||||||
Sbjct 964 CTTTTATATAAGAGTTTCTTCA 985
> Ahg925736 jgi|Araly1|925736|scaffold_201297.1
Length=1231
Score = 202 bits (109), Expect = 6e-51
Identities = 206/250 (82%), Gaps = 17/250 (7%)
Strand=Plus/Plus
Query 999 TAAGAGTTTCTTCATTGA-CATGGAGAAGA-AAGTTGCTATGGTTTTTGATaaagaaaaa 1056
|||||||||||||||||| | |||||| | |||||||| | |||||||| |||| ||
Sbjct 983 TAAGAGTTTCTTCATTGAGGA-GGAGAA-ACAAGTTGCTGTTGTTTTTGACAAAG---AA 1037
Query 1057 ggaaaaaaaGTCGCTCACAACATTATTAATATCATTGGAGAGGCTGGATGCGTGAGGAAA 1116
|| |||||| || | | | | |||| ||||||||||||||||||||||| ||||||||
Sbjct 1038 GG-AAAAAA-TCTAT-GCGATACTATTCATATCATTGGAGAGGCTGGATGCTTGAGGAAA 1094
Query 1117 TTGGTTCTTAAAGAATCTGGAG-ACAAAAGCTGTTGGCCACTTGTGTGCTCTTATGTTCC 1175
||| ||| |||| | || | ||||| |||| ||||||||||||||||||||||||
Sbjct 1095 GTGGAGCTTGGAGAACCCACAGAAAAAAAG-TGTTTGCCACTTGTGTGCTCTTATGTTCC 1153
Query 1176 AAGTACAGTGCAAATCAAGCAACATAATAGA-GGCAAAAGGCaaa-aa-aaaGTGATTAG 1232
||||| |||||||||||||| |||||| ||| ||||||||| ||| || |||| ||||||
Sbjct 1154 AAGTATAGTGCAAATCAAGCTACATAA-AGAAGGCAAAAGG-AAAGAACAAAGCGATTAG 1211
Query 1233 GAAAGGCATC 1242
||||| ||||
Sbjct 1212 GAAAGACATC 1221
> Ahg930411 jgi|Araly1|930411|scaffold_302868.1
Length=1141
Score = 176 bits (95), Expect = 3e-43
Identities = 447/607 (74%), Gaps = 63/607 (10%)
Strand=Plus/Plus
Query 190 ATGATTGTGATGATGGATTACAA-CGTTTATTTAATGGGCATCA-TCGTCAA-CGAAAAC 246
||||| |||||||||| | |||| | ||||||||| | |||| | || |||| || |||
Sbjct 69 ATGATCGTGATGATGGGTAACAATC-TTTATTTAACGAGCATTACTC-TCAATGGAGAAC 126
Query 247 CTATCCATAAAGTC-TCTAGGTAAACTTACTTGCCTACATGGTTCTAAACAAGTCAAGAT 305
| ||| || || | ||| |||||||||||||| | | | |||||| ||||||
Sbjct 127 C-ATCTATTGAG-CAAATAGACAAACTTACTTGCCT---T-G-AC-GAACAAGCCAAGAT 178
Query 306 ATCTCAAGTCTTTCATTGTGAGGGTTTATTATTATGCATCTTAAAAGACGATGATACTAA 365
||| || |||||| | || ||||| ||||| ||||||| || ||||| | ||| |||
Sbjct 179 ATCACAGGTCTTTGACTGCGAGGGCTTATTGCTATGCATATTGAAAGA--A-GATTCTAG 235
Query 366 GATTGTGGTTTTGAATCCGTATTTGGGGCAAACAAGGTGGATCCAAACCA-GAAAGTATC 424
| |||||||| |||||||||||||||||||||||||||||||| || ||| || | | |
Sbjct 236 GTTTGTGGTTCTGAATCCGTATTTGGGGCAAACAAGGTGGATCGAA-CCAAGATATTCCC 294
Query 425 ACCGTACAAGTGAATGGGAAG-GACGAGATGTTTA-TAACTATGCTCTCCGATACGA-AA 481
| ||| || | | || | | ||| || ||||| | ||||||||| |||||| ||
Sbjct 295 ATCGTCCA--T-AC-GG-ATGTGAC-AG--GTTTAGT---TATGCTCTCGGATACGTGAA 343
Query 482 CTAAC-AGTGGAAACCGTAGCCCCAAAATCTTGAGGTTTATAGATGATTTCCATCACC-- 538
||| | | | ||||| ||| | ||||||||||||||| ||||| | ||
Sbjct 344 -TAAGGAATCTTGTC-GTAGCTACAAGTTATTGAGGTTTATAGATTATTTCTA-CAATGT 400
Query 539 ACCCCGAAAACCCCG--CTTTACGATATGAAACCTACGATTTTGA-TACTGATTTATGGA 595
|||| ||||| | | |||| | ||||||| ||| |||||||| | ||||||||||||
Sbjct 401 ACCC-GAAAAGCA-GTTCTTTTGG-TATGAAATCTATGATTTTGACT-CTGATTTATGGA 456
Query 596 CTACTCTTGATGTCTCTCCACACTGGCGGATAATATCTCGCTGTG-GTGGTGTTTCTCTT 654
| ||||||||| | |||||||| ||||| ||| || | | | |||| |||||||||
Sbjct 457 CGACTCTTGATATATCTCCACATTGGCGTATAGCATTTTG-TAACCGTGGCGTTTCTCTT 515
Query 655 AATGGAAACACTTA-TTGGG-GC-GCTGTA-G-AACGAA-ACGCATCTGCATATATTGGT 708
|| ||||||||||| || | || |||| | | |||| | | | | | | | ||||
Sbjct 516 AAGGGAAACACTTACTTTTGTGCTGCTGAAAGGAACGTAGATGTAAAAGAAG-TCTTGGC 574
Query 709 CA-TA--TGA-TCTGCTTT-GATTTTACAAGAG-GAGGATTTGGACCGCTTATACCTCTG 762
|| || | | |||| ||| ||||||||||| | ||| |||||| |||||| | ||||||
Sbjct 575 CAATAGCTTAATCTG-TTTCGATTTTACAAGTGAGAG-ATTTGGTCCGCTTCTGCCTCTG 632
Query 763 CCGTTTA 769
|||||||
Sbjct 633 CCGTTTA 639
> Ahg479757 jgi|Araly1|479757|fgenesh2_kg.3__2458__AT3G22421.1
Length=1236
Score = 154 bits (83), Expect = 2e-36
Identities = 221/284 (78%), Gaps = 23/284 (8%)
Strand=Plus/Plus
Query 150 GAAAGAAGAAGAAGCAGCAAGGGAATTAGGAGAGAATCGAATGATTGTGATGATGGATTA 209
||||||||||| |||||||| || | ||||||| ||| ||||| ||| |||||||| |
Sbjct 141 GAAAGAAGAAGCAGCAGCAAAGG-A--AGGAGAGTCTCGGATGATCGTGTTGATGGATAA 197
Query 210 CAA-CGTTTATTTAATGGGCATCATCGTCAA-CGAA--AAC-CT-ATCCA--T--AAAGT 259
||| | | | || | || ||||| || |||| ||| || | ||||| | | ||
Sbjct 198 CAATC-TGTGTTCAGTGAGCATCTTCTTCAATGGAATTGACATTGATCCATCTGCAGAG- 255
Query 260 C-TCTAGGTAAACTTACTTGCC--TAC-ATGGTTCTA-AACAAGTCAAGATATCTCAAGT 314
| ||||||||||||||||| ||| ||| ||| | ||||||||||||||||||||||
Sbjct 256 CAAAAAGGTAAACTTACTTGCCTATACGATGATTC-AGAACAAGTCAAGATATCTCAAGT 314
Query 315 CTTTCATTGTGAGGGTTTATTATTATGCATCTTAAAAGACGATGATACTAAGA-TTGTGG 373
|||||| || |||||||| ||| ||||| || | ||||||||| | || | |||| |
Sbjct 315 CTTTCACTGCGAGGGTTTGTTACTATGCGTCATCAAAGACGATAAGGGTA-GTCTTGTTG 373
Query 374 TTTTGAATCCGTATTTGGGGCAAACAAGGTGGATCCAAACCAGA 417
||| ||||||||||||||| ||||||||||||||| || |||||
Sbjct 374 TTTGGAATCCGTATTTGGGACAAACAAGGTGGATCGAACCCAGA 417
> Ahg482868 jgi|Araly1|482868|fgenesh2_kg.4__1928__AT2G38590.1
Length=973
Score = 104 bits (56), Expect = 2e-21
Identities = 71/78 (91%), Gaps = 2/78 (3%)
Strand=Plus/Plus
Query 293 AACAAGTCAAGATATCTCAAGTCTTTCATTGTGAGGGTTTATTATTATGCATCTTAAAAG 352
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||
Sbjct 326 AACAAGTCAAGATATCTCAAGTCTTTCACTGTGAGGGTTTATTGTTATGCATCTTGAAAG 385
Query 353 ACGATGATACTAAG-ATT 369
| || ||||| ||| |||
Sbjct 386 AAGACGATAC-AAGGATT 402
> Ahg342698 jgi|Araly1|342698|fgenesh1_pg.C_scaffold_3002461
Length=1110
Score = 75.0 bits (40), Expect = 1e-12
Identities = 145/193 (75%), Gaps = 18/193 (9%)
Strand=Plus/Plus
Query 1002 GAGTTTCTTCATTGAC-ATGGAGAAGAAAGTTGCTATGGTTTTTGATaaagaaaaaggaa 1060
|||||||||||||||| | |||||||||||| ||| ||||||||||| ||| | |
Sbjct 921 GAGTTTCTTCATTGACGA-GGAGAAGAAAGTCGCTGTGGTTTTTGAT----AAATACTAC 975
Query 1061 aaaaaGTCGCTCACAACATTA--TTAATATCATTGGAGAGGCTGGATGCGT-GAGGAAAT 1117
|| | ||| | || || || || | |||||||||| || ||||| | | | | |
Sbjct 976 AACGA-TCG-GCGCAGCA-TAGCTT-ACATCATTGGAGTGGATGGATCCTTCAAAG-CAG 1030
Query 1118 TGGTTCTTAAAGAATCTGG-AGAC-AAAAGCTGTTGGCCACTTGTGTGCTCTTATGTTCC 1175
||| ||| |||||| || | || || | |||| |||||||||||||||||||||||
Sbjct 1031 TGGATCTCGGAGAATC-GGCATACGCAATG-TGTTACCCACTTGTGTGCTCTTATGTTCC 1088
Query 1176 AAGTACAGTGCAA 1188
||||| |||||||
Sbjct 1089 AAGTATAGTGCAA 1101
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47996752503
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5