BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G10750.1
Length=1264
Score E
Sequences producing significant alignments: (Bits) Value
Ahg942896 jgi|Araly1|942896|scaffold_603440.1 1760 0.0
> Ahg942896 jgi|Araly1|942896|scaffold_603440.1
Length=1119
Score = 1760 bits (953), Expect = 0.0
Identities = 1070/1126 (95%), Gaps = 10/1126 (1%)
Strand=Plus/Plus
Query 29 TACTTCCCAAGTTCACCGCAATGGCCACCGCTTCAATCTTCCCCGCCGCCGT-GACCGTC 87
||||||||||||||||||| ||| |||||||||||||||||||||||||||| | ||||
Sbjct 1 TACTTCCCAAGTTCACCGCCATGACCACCGCTTCAATCTTCCCCGCCGCCGTCG-TCGTC 59
Query 88 ACCAGAGATGTGACATCTCT-TCTTAATCCATCTTCTCTGATAATCGGAAAATCATTATC 146
|||| |||||||||| |||| | ||||||||||||||||||| |||||||||||||||||
Sbjct 60 ACCACAGATGTGACACCTCTGT-TTAATCCATCTTCTCTGATCATCGGAAAATCATTATC 118
Query 147 TCCTTCAAAGTTCAGCTCAATCAAATCCTCCGTTTCATTTTCCCGCAAAACCCTAACTCC 206
| |||||||||| |||||||||| |||||| |||||||| ||||||||||| ||||||||
Sbjct 119 TACTTCAAAGTTTAGCTCAATCAGATCCTCAGTTTCATTCTCCCGCAAAACGCTAACTCC 178
Query 207 AATTCGATACTCTTCATCTCCCGCCGATCACTCACCCGCCACCGCCGTGGAAGCGATCAC 266
||| ||||||||||| |||||||||||||||||||||| | |||||||||||||||||||
Sbjct 179 AATCCGATACTCTTCGTCTCCCGCCGATCACTCACCCGTCGCCGCCGTGGAAGCGATCAC 238
Query 267 GAATCGATCCAAAACCTCCTTGAAATCTCGTCTCCGTGGAGGAGAAACTCTCTACGGTCT 326
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 239 GAACCGATCCAAAACCTCCTTGAAATCTCGTCTCCGTGGAGGAGAAACTCTCTACGGCCT 298
Query 327 CTTTTTACTCTCCTTCTCGCCGACATTAGCCGAGATCGCTGCTCACGCCGGTTACGATTA 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 CTTTTTACTCTCCTTCTCGCCGACATTAGCCGAGATCGCTGCTCACGCCGGTTACGATTA 358
Query 387 CGTCGTCGTTGATATGGAACATGGTCCCGGAGGTATACCGGAAGCTTTGGATTGTATTCG 446
|||||||||||| |||||||| |||||||| || |||||||||||||| |||||||||||
Sbjct 359 CGTCGTCGTTGACATGGAACACGGTCCCGGCGGCATACCGGAAGCTTTAGATTGTATTCG 418
Query 447 AGCTCTTAACGCCGCCGGAACATCAGCCATTCTCCGATTACCGGAAAACTCAC-CAACCT 505
||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 419 AGCTCTTAACGCCGCCGGAACATCAGCCATTCTCCGATTACCGGAAAACTC-CTCAACCT 477
Query 506 GGGCTAAAAAAGCTCTAGATCTAGGTCCACAAGGAATCATGTTCCCAATGATCGAATCTC 565
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 GGGCTAAAAAAGCCCTAGATCTAGGTCCACAAGGAATCATGTTCCCAATGATCGAATCTC 537
Query 566 GTAAAGACGCTACCAAAGCGGTGTCGTATTGCCGGTTTCCTCCCGACGGTATCCGTGGAT 625
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 538 GCAAAGACGCTACCAAAGCGGTGTCGTATTGCCGGTTTCCTCCCGACGGCATCCGTGGAT 597
Query 626 CGGCGCACACGGTGGTGAGAGCTTCTAACTACGGAATCGATGAAGGGTATTTAAGTAATT 685
||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||||
Sbjct 598 CGGCGCACACGGTGGTGCGAGCTTCAAACTACGGAATCGACGAAGGGTATTTAAGTAATT 657
Query 686 ACGCAGAGGAGATTCTGATTATGTGCCAGGTGGAATCAGGTGAAGGAGTGAAGAAAGCTG 745
||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 658 ACGCAGAGGAGATTCTGATCATGTGCCAGGTGGAATCATCTGAAGGAGTGAAGAAAGCTG 717
Query 746 ATGAAATCGCAGCCGTTGATGGTGTTGACTGTGTGCAAATGGGACCGTTGGATCTTAGTG 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 ATGAAATCGCAGCCGTTGATGGTGTTGACTGTGTGCAAATGGGACCGTTGGATCTTAGTG 777
Query 806 CGAGTTTAGGGTATTTGTGGGATCCTGGACATAAGAAAGTGAGAGAGATGATGAAGAAGG 865
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 778 CGAGTTTGGGGTATTTGTGGGATCCTGGACATAAGAAAGTGAGAGAGATGATGAAGAAAG 837
Query 866 CTGAGAAATCTGTGCTGACCACTGATCCGGCGAAAGGCGGGGCTTACTTGTCGGGTTTCG 925
||||||||||||||||||| |||||||||| |||||||||||||| |||||||||||||
Sbjct 838 CTGAGAAATCTGTGCTGACGTCTGATCCGGCTAAAGGCGGGGCTTATTTGTCGGGTTTCG 897
Query 926 CGATGCCGCACGACGGAGCTGGTGAGATTCGGGGACGTGGTTACCATATGGTCGCCGGAG 985
|||||||||| |||||||||| |||||| |||||||||||||| ||||||||||||||||
Sbjct 898 CGATGCCGCATGACGGAGCTGTTGAGATCCGGGGACGTGGTTATCATATGGTCGCCGGAG 957
Query 986 CTGTTGATGTTGGATTGTTTAGGAATGCTGCTGTTGAAGATGTGAGGAGATTCAAGATGG 1045
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 CTGTTGATGTTGGATTGTTTAGGAATGCTGCTGTTGAAGATGTGAGGAGATTCAAGATGG 1017
Query 1046 GTTTGGTCAATGAATCGGACAGTGAGGATTCGTCGGAACATGATAAAGATGTTGATGATG 1105
|||||||||||||||||||| |||||||||||| ||||||||||||||||||||| ||||
Sbjct 1018 GTTTGGTCAATGAATCGGACGGTGAGGATTCGTTGGAACATGATAAAGATGTTGACGATG 1077
Query 1106 AGAAGTACTGGAGCGAATAAGCAAAATTTCAAATTTCGTTAATGTT 1151
||||||| |||||||||||| ||| || |||||||||||||||||
Sbjct 1078 AGAAGTATTGGAGCGAATAA--AAA-TT-CAAATTTCGTTAATGTT 1119
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47234294163
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5