BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G10800.1
Length=1264
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489924 jgi|Araly1|489924|fgenesh2_kg.6__3058__AT4G10800.1 1652 0.0
> Ahg489924 jgi|Araly1|489924|fgenesh2_kg.6__3058__AT4G10800.1
Length=1178
Score = 1652 bits (894), Expect = 0.0
Identities = 1089/1184 (92%), Gaps = 10/1184 (1%)
Strand=Plus/Plus
Query 85 AAACATCG-AAAAATGCAGGACGATGTCATTGATGTATCCCTCAATACAAAGAATGTCTT 143
|||||||| |||||||||||| | ||||||||||||||| ||||||||||||||||||||
Sbjct 1 AAACATCGCAAAAATGCAGGAAGCTGTCATTGATGTATCACTCAATACAAAGAATGTCTT 60
Query 144 CTTGTCAGCTCTTC-ATTTCGCCATGTCCATTGATACACTAAAGAACTCTCCTGAGCTTG 202
|| ||||||||| | | ||||| ||||||||||||||| | |||||||||||||||||||
Sbjct 61 CTCGTCAGCTCTCCGA-TTCGCTATGTCCATTGATACATTGAAGAACTCTCCTGAGCTTG 119
Query 203 TTGATGAGCTGAAAACATCAGCTCAAGAACAAGTGGAGTTTATGTTATCTGAAGACGAAG 262
|| ||||||| ||||| ||||||||||||||||||||||| |||||||| || |||||||
Sbjct 120 TTCATGAGCTCAAAACTTCAGCTCAAGAACAAGTGGAGTTCATGTTATCCGAGGACGAAG 179
Query 263 AGGTACGGTTACTGATTTCCGAAGAGGAAGTGAAATCCGTTGTGAGATTAGGTATCTCAA 322
||||||||||||||||| | ||||||||||||||||| ||||| |||||||||||||| |
Sbjct 180 AGGTACGGTTACTGATTACTGAAGAGGAAGTGAAATCGGTTGTTAGATTAGGTATCTCGA 239
Query 323 ATGTTATATCGATGTTATTGGATAGATTATCATCATTGCTTGTGATTCTTCCTGAATGTA 382
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 240 ATGTTATATCGATGTTGTTGGATAGATTATCATCTTTGCTTGTGATTCTTCCTGAATGTA 299
Query 383 CTGAGTTTAGTGTTCTTAAGACATTATATGATATTGAGTGGTTGTGTAAAGTATTGCCAA 442
||||||||||||||||||| ||| | ||||||||||||||| | || ||||||||||| |
Sbjct 300 CTGAGTTTAGTGTTCTTAAAACACTCTATGATATTGAGTGGCTATGCAAAGTATTGCCGA 359
Query 443 GGATGGAGTTGATGAAAGATCTTGTCGTTAAGTGGACCGATGCATCGAGTGAGATTCTTG 502
|||||||||||||||||||||||||| |||||||| |||||| |||||||||||||||||
Sbjct 360 GGATGGAGTTGATGAAAGATCTTGTCTTTAAGTGGGCCGATGTATCGAGTGAGATTCTTG 419
Query 503 TGATTGCTCAGAAGTGTGAGTTGGATTCTAGGATATTGGGTGTGAAGGTTAAGCTAGTTG 562
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 420 TGATTGCTCAGAAGTGTGAGTTAGATTCTAGGATATTGGGTGTGAAAGTTAAGCTAGTTG 479
Query 563 AGGTTACAGGGAAGATTTTAGAAGCGGTAGGTTATGGAATTGTGATTGTTCCTTCTAAAA 622
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 480 AGGTTACAGGGAAGATTTTAGAAGCGGTAGGTTATGGTATCGTGATTGTTCCTTCTAAAA 539
Query 623 GCAGGACTTGTCTTTTGAAGATATGGTTGCCTTTCATAAGGAGATTAAAGACTTTGGTTG 682
|| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 540 GCCGGACTTGTCTTCTGAAGATATGGTTGCCTTTCGTAAGGAGATTAAAGACTTTGGTTG 599
Query 683 ATGCAGAGGGATGTGAGTATGAGTATAGAATGGATGAAGATCTTTGTGAATTTATAGAAG 742
||||||| |||| ||||| ||| || |||||||||||||||||||| |||||||||||||
Sbjct 600 ATGCAGAAGGATCTGAGTCTGAATACAGAATGGATGAAGATCTTTGCGAATTTATAGAAG 659
Query 743 GATCTATGGTGTCTTTGGTTTTGACATTGCCTTCAAATGACCAAGCAGAAGTGTTTGGTG 802
|||| ||||||||||||||||||||||| ||||| || |||||||||||||| ||||| |
Sbjct 660 GATCGATGGTGTCTTTGGTTTTGACATTACCTTCGAACGACCAAGCAGAAGTATTTGGGG 719
Query 803 AATGGATGAGAGGTATTGGGTTGGAAGGTGTGAAGTTTCCGGATTTAAGTGAAGCGTTTG 862
||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 720 AATGGATGAGAGGGATTGGGTTGGAAGGTGTGAAGTTTCCGGATTTGAGTGAAGCTTTTG 779
Query 863 AGGTTTGGTGTTATAGAAGTAAGTCTGCAAAGAGAAGATTGGTGGAAAGATGTGATAGAC 922
||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 780 AGGTTTGGTGTTATAGAAGTAAGTCTGCAAAGAGAAGGTTGTTGGAAAGATGTGATAGAC 839
Query 923 TTGCAATTGTAAATCTTGACCATTGAATGGT-GTATATCAGTTTCGAGATTCGGTAAACT 981
||||||||||||||||||| ||||||| | | ||||||| | ||| |||||||| |||||
Sbjct 840 TTGCAATTGTAAATCTTGATCATTGAAAG-TAGTATATCGGCTTCAAGATTCGGGAAACT 898
Query 982 TTAAATGAAGATGTAGCTAAGCAATTTGAAGTTCCAGGCTTTTCTTCTTCCTACAAGCTG 1041
||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||| |
Sbjct 899 GGAAATGCAGATGTAGCTAAGCAATTTGAAGTTCCAAGCTTTTCTTCTTCCT-CAAGCCG 957
Query 1042 GTCTGCTTATTTTCGAAGGTCGAATGAAGATGGATAATAGCTTTGTTCAATTCACAGTTC 1101
||||| |||||| | ||||| ||||||||||||||| |||| |||||| |||||||||||
Sbjct 958 GTCTGTTTATTTCCAAAGGTTGAATGAAGATGGATAGTAGCGTTGTTCGATTCACAGTTC 1017
Query 1102 ACTCACAATGCCTTAAGAGTGGACCCCAAGCGAGG-TAACCCGATAATTTCAGGCGTATT 1160
|||||||||||||| ||| | ||||| ||| || | |||||||||||||||| ||||||
Sbjct 1018 ACTCACAATGCCTTGAGACTAGACCC-AAG-GAAGATAACCCGATAATTTCAACCGTATT 1075
Query 1161 TGCTGCTTCGTTGTAATGCTAGATTGTATTAGGAGTGACATAAAGCTTCTGATTCTTGTA 1220
||||||||| ||||||| || ||||||| ||||||||||| |||||| ||||||||||||
Sbjct 1076 TGCTGCTTCATTGTAATTCTGGATTGTAGTAGGAGTGACAGAAAGCTCCTGATTCTTGTA 1135
Query 1221 ACTTTGATCCTGATTAAATGATATAAATGGTGCGGTCTATGTTT 1264
||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1136 ACTTTGATCCTGATTAA-TGATATAAATGGTGCGGTCTATGTTT 1178
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47234294163
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5