BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G10810.1
Length=621
Score E
Sequences producing significant alignments: (Bits) Value
Ahg942904 jgi|Araly1|942904|scaffold_603448.1 398 3e-110
> Ahg942904 jgi|Araly1|942904|scaffold_603448.1
Length=286
Score = 398 bits (215), Expect = 3e-110
Identities = 250/267 (94%), Gaps = 1/267 (0%)
Strand=Plus/Plus
Query 85 TCCAATCGAAATCGAGAAGCCATGGATAACAGCAGCAGCATCAATTCCACCGCTTCCACG 144
|||||||| || || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TCCAATCG-AACCGTGAAGCCATGGATAACAGCAGCAGCATCAATTCCACCGCTTCCACC 59
Query 145 GCCTCAAATCTGAGCACGGCTTCTCTGGAAAAGCTAGATCAAGCGGCGAGCTGGGTCAGC 204
||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 60 GCCTCAAATCTAAGCACGGCTTCCCTCGAAAAGCTAGATCAAGCGGCGAGCTGGGTCAGC 119
Query 205 ACCACCGTTATTTCCGCCTTCTTCGCCTCCCTCGAGCGTTGCTCATGCGTTAACCTATCT 264
|||||||| || || ||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 120 ACCACCGTCATCTCTGCCTTCTTCGCCTCCCTTGAGCGTTGCTCATGCGTTAATCTATCT 179
Query 265 ACCTCCGATGATGACGATGAAGGCGAAGAATCTCACAACCGTCCCCTTGCTCTCTCCGCC 324
|||||||||||||| ||||| || ||||| ||||||||||||||||||||||||||||||
Sbjct 180 ACCTCCGATGATGATGATGACGGAGAAGAGTCTCACAACCGTCCCCTTGCTCTCTCCGCC 239
Query 325 GCTCCTCACCCAGACGACATCGTTTAG 351
||| |||||||||||||||||||||||
Sbjct 240 GCTACTCACCCAGACGACATCGTTTAG 266
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22721258532
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5