BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G10820.1
Length=822
Score E
Sequences producing significant alignments: (Bits) Value
Ahg352151 jgi|Araly1|352151|fgenesh1_pg.C_scaffold_6002744 292 2e-78
Ahg942093 jgi|Araly1|942093|scaffold_602637.1 134 1e-30
Ahg942105 jgi|Araly1|942105|scaffold_602649.1 80.5 2e-14
> Ahg352151 jgi|Araly1|352151|fgenesh1_pg.C_scaffold_6002744
Length=1062
Score = 292 bits (158), Expect = 2e-78
Identities = 387/488 (79%), Gaps = 53/488 (11%)
Strand=Plus/Plus
Query 382 TACAATGAAT-TTGTAGCCAACACTGATCTATTACCACCACGTTACCTAGCTTCTCATTC 440
||||||| || ||||| ||||||||||||||||| |||||| ||||| |||||||||| |
Sbjct 544 TACAATG-ATGTTGTATCCAACACTGATCTATTATCACCACTTTACCCAGCTTCTCATCC 602
Query 441 GAGTAGTGATGAT--AA-GATGTAT--TCTAGCCA-----TAG--A-AATATTGTTGTTA 487
||||||||||||| || | ||| | || || ||| | || |||| |||||
Sbjct 603 GAGTAGTGATGATGAAACCACATATGATGGAG-CATTTTCTAGACATAACATTGCTGTTA 661
Query 488 CAACATCAGGAGAGGTTTTGTTAGTCGAGAGCATCG-TT-TG-TGA-------G--TC-- 533
||||||||||||||||||| || ||||||||||||| || || ||| | ||
Sbjct 662 CAACATCAGGAGAGGTTTTATTGGTCGAGAGCATCGTTTATGATGATTCCTCTGACTCTG 721
Query 534 ---T---A--GA--ATCGGCTTCCGCCTCTATAAGAAGGTTCCTAATCCAAATCCGGATG 583
| | | ||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct 722 AAATACCACCTATGATCGGCTTCCGCCTCTACAAGAAGGTTCCTAATCCAGATCCGGATG 781
Query 584 AGCTTT-TATACACACCGTATGTGTCTGTTGAGGTATATTCTTTAGGCGATGAGGCCT-T 641
|| ||| |||||| |||| | ||||||||||||||| ||||| |||| ||||||| || |
Sbjct 782 AG-TTTATATACAGACCGAAGGTGTCTGTTGAGGTAGATTCTCTAGGTGATGAGG-CTCT 839
Query 642 TCGTTTGGATTTAGGTATCATTGTGCCTGCTGACCATCCCCTTGGTAT-----CGAA--C 694
| ||||||||||||||||| |||||||||||||||| | |||||||| | || |
Sbjct 840 CCTTTTGGATTTAGGTATCACTGTGCCTGCTGACCATACACTTGGTATCCAACCAAACTC 899
Query 695 CATCTATTTCACCCGTTACGACCGTGTCTATAACTGTGAAA-AGGATTTTTCATGTCGGG 753
|||||||||||||||| | |||||| || ||||||| ||| | | |||||| ||||
Sbjct 900 CATCTATTTCACCCGTCATGACCGTCTCCGTAACTGT-AAACTGAAACCTTCATGCCGGG 958
Query 754 TCCGACACATCTGTGTGTTCAATCTTGAAACAAAGAAAATCACACGCTTCCCAAGTCTCT 813
|||| ||||||||||||||||||||||||||||||| ||||||||||||| || ||||
Sbjct 959 CCCGAGACATCTGTGTGTTCAATCTTGAAACAAAGAATGTCACACGCTTCCCTAGCCTCT 1018
Query 814 CGCACTTA 821
| |||||
Sbjct 1019 CTTACTTA 1026
Score = 134 bits (72), Expect = 1e-30
Identities = 78/81 (96%), Gaps = 0/81 (0%)
Strand=Plus/Plus
Query 285 GAATGTGGTTAATTTGAGAGGTCTTTTGTGGGTAGATGAGGAGAATAAAGAAGAATACAC 344
||||||||||||| |||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 279 GAATGTGGTTAATCTGAGAGGTCTTTTGTGGGTAGATGAGAAGAAGAAAGAAGAATACAC 338
Query 345 TGTTGTGTGGTTTTTCGATAC 365
|||||||||||||||||||||
Sbjct 339 TGTTGTGTGGTTTTTCGATAC 359
> Ahg942093 jgi|Araly1|942093|scaffold_602637.1
Length=1427
Score = 134 bits (72), Expect = 1e-30
Identities = 274/365 (75%), Gaps = 39/365 (11%)
Strand=Plus/Plus
Query 16 GATGGTTG-TGTGCTA--TACAATCCAGAAGAAGATAATAGAGTTTACA-ATACAAAGAG 71
|||||| | ||||||| ||||| || || |||| | ||| |||||| | || |||||
Sbjct 205 GATGGTGGTTGTGCTATGTACAACCCGGATGAAG--CA-AGAATTTACAGA-ACGAAGAG 260
Query 72 AGACTTTTCAAAGACTCGTTTCCTAGCAAACTCAGGTAACTTGTTCCTCACG--GTAGAT 129
|| |||||| || ||| ||| | |||||||||||||||| ||| || | | |||||
Sbjct 261 AGGCTTTTCCGGGATTCGATTCTTGGCAAACTCAGGTAACTGGTT-CTTA-GTTCTAGAT 318
Query 130 GT-TGAA-TCCAATCTCTATATCATAGATTTGTTTAGCGAGAAGA-GAATCAATCTCCCA 186
| | || |||||| |||||||||||||||||||||||||||| | || || |||| |||
Sbjct 319 -TCT-AAGTCCAATATCTATATCATAGATTTGTTTAGCGAGAAAAAGA-TCGATCTTCCA 375
Query 187 CCTTTAGACTCAGTGGAAGG----CCTTTTTACTCTTAAGCGAA-TAGGAGATAAGG-AT 240
||| |||| ||| || |||| |||||||| |||| ||| || ||||||| | || ||
Sbjct 376 CCTCTAGAGTCAATG-AAGGGTGGCCTTTTTAGTCTTGAGC-AAGTAGGAGACACGGCAT 433
Query 241 TTCGAAGA-GAAATTTACTAGACC-TAGCTTTGGTTACAGAAACCAGAATGTGGTTA-AT 297
| | ||| || ||| | || | ||| | | || | ||| |||| || | ||
Sbjct 434 T-C-AAGGCGAGATTAAATA-ATGGTAG-T--GCATATTCATTCCATAATGCGGA-AGAT 486
Query 298 TTGAGAGGTCTTTTGTGGGTAGATGAGGAGAATAAAGAAGAATACACTGTTGTGTGGTTT 357
|||||||||||||||||||||| ||| |||| |||||| | | |||||||||||||
Sbjct 487 CTGAGAGGTCTTTTGTGGGTAGACGAGAAGAAGAAAGAAT--T-CGTTGTTGTGTGGTTT 543
Query 358 TTCGA 362
|||||
Sbjct 544 TTCGA 548
> Ahg942105 jgi|Araly1|942105|scaffold_602649.1
Length=1204
Score = 80.5 bits (43), Expect = 2e-14
Identities = 167/223 (75%), Gaps = 23/223 (10%)
Strand=Plus/Plus
Query 609 TGTTGAGGTATATTCTTTAGGCGATGAGGCCTTTCGTT-TGGATTTAGGTATCATTGTGC 667
|||||||||| |||||||||| |||||||| | | || ||||||| ||||| | || |
Sbjct 938 TGTTGAGGTAGATTCTTTAGGTAATGAGGCCCTGC-TTCTGGATTTGGGTATAACCGTTC 996
Query 668 CTGCTGACCATCCCCTTGGTATCG-----AAC-C-ATCTATTTCACCCGTTACGACCGTG 720
||||||| | ||||||||||| ||| | ||||||||||| ||| | || ||||
Sbjct 997 CTGCTGATGGTGACCTTGGTATCGAACCAAACTCTATCTATTTCACTCGTCATGATCGTG 1056
Query 721 TCTATAACTGTGAAAAGGATTTTTCATGTCGGGTCCGACACATCTGTGTGTTCAATCTTG 780
|| | || | ||| | |||||| | ||| |||||||||||||||||||||
Sbjct 1057 TCCGTTAC-CAG-AAACG----TTCATG-C----CCG-GACATCTGTGTGTTCAATCTTG 1104
Query 781 AAACAAAGAAAATCACACGCTTCCCAAGTCTCTCGCA-CTTAA 822
||||||||| ||| ||| ||||| ||||||| || |||||
Sbjct 1105 AAACAAAGACCCTCAGACGTTTCCCCGGTCTCTC-CAACTTAA 1146
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30383964849
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5