BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G10840.1
Length=2160
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489926 jgi|Araly1|489926|fgenesh2_kg.6__3060__AT4G10840.1 3387 0.0
> Ahg489926 jgi|Araly1|489926|fgenesh2_kg.6__3060__AT4G10840.1
Length=2139
Score = 3387 bits (1834), Expect = 0.0
Identities = 2052/2155 (95%), Gaps = 24/2155 (1%)
Strand=Plus/Plus
Query 1 CTCGTCTCCTTCTCCACTTGGATCTCAAAAGTCCGATCCAAAACCAAATCCGCCATAAct 60
|||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |||
Sbjct 1 CTCGTCTCCTTCTCCACTTGGATCTCAAAA-TTCGATCCAAAACCAAATCCGCCATTACT 59
Query 61 ctctctctctctcCCACTTCCCACAGAGAGACACATTCATGCCAGCAATGCCAGGTCTCG 120
||||||||||||| ||||| | | |||||||||||||||||||||||||||||
Sbjct 60 CTCTCTCTCTCTCTCACTT--C-C-------CACATTCATGCCAGCAATGCCAGGTCTCG 109
Query 121 TCTCAGTCAAAACTCCTTCCGATACACCGCCGCTACGTGTAGCCGTACCAGACACGCAAC 180
|||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 110 TCTCCGTCAAAACTCCAGCCGATACACCGCCGTTACGTGTAGCCGTACCAGACACGCAAC 169
Query 181 CTCTCTCAAACCCGCCGCGAACTCCGATGAAGAAAACCCCTTCCTCTACACCATCTCGAT 240
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 170 CTCTCTCAAACCCGCCGCGAACTCCGATGAAGAAGACTCCTTCCTCTACACCATCTCGAT 229
Query 241 CCAAACCATCACCAAATAGATCCACCGGCAAAAAAGATTCCCCAACCGTATCCTCCT--- 297
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 230 CCAAACCATCACCAGGTAGATCCAGCGGCAAAAAAGATTCCCCAACCGTATCCTCCTCCG 289
Query 298 -C-CA-CCGCAGCCGTAATCGACGTCGACGATCCATCTCTAGATAATCCAGATCTCGGTC 354
| || |||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 290 CCGCAGCCGCCGCCGTAATCGACGTCGACGATCCATCTCTAGATAATCCAGATCTTGGTC 349
Query 355 CTTTCCTTCTAAAATTAGCTCGTGACGCTATTGCTTCTGGTGAAGGTCCTAACAAAGCAT 414
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 350 CTTTCCTTCTCAAATTAGCTCGTGACGCTATTGCTTCTGGTGAAGGTCCTAATAAAGCAT 409
Query 415 TAGATTACGCGATCCGAGCAACTAAGTCCTTTGAGAGATGTTGCGCCGCCGTTGCTCCGC 474
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 410 TAGATTACGCGATCCGAGCAACTAAATCGTTTGAGAGATGTTGCGCCGCCGTTGCTCCGC 469
Query 475 CTATTCCCGGTGGTAGCGATGGTGGACCTGTTCTTGATCTCGCTATGAGCCTTCATGTTC 534
|||||||||| |||||||||||||||||||||||||| || |||||||| ||||||||||
Sbjct 470 CTATTCCCGGCGGTAGCGATGGTGGACCTGTTCTTGACCTAGCTATGAGTCTTCATGTTC 529
Query 535 TCGCTGCTATTTACTGTAGTCTCGGCCGATTTGATGAAGCTGTACCACCTCTTGAACGAG 594
||||||||||||||||||||||||| ||||| |||||||| |||||||| ||||| ||||
Sbjct 530 TCGCTGCTATTTACTGTAGTCTCGGTCGATTCGATGAAGCAGTACCACCGCTTGAGCGAG 589
Query 595 CTATTCAAGTCCCTGATCCGACTCGTGGCCCTGACCACTCTCTCGCTGCGTTTTCTGGTC 654
||||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 590 CTATTCAGGTCCCTGATCCGACTCGTGGTCCTGACCACTCTCTCGCTGCGTTTTCCGGTC 649
Query 655 ATATGCAACTTGGTGATACGTTGTCTATGCTTGGTCAGATTGATAGATCTATTGCTTGTT 714
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 650 ATATGCAACTTGGTGATACGTTGTCTATGCTTGGTCAAATCGATAGATCTATTGCTTGTT 709
Query 715 ATGAAGAAGGTCTTAAGATCCAGATCCAGACTTTGGGTGATACTGATCCACGAGTTGGTG 774
|||||||||||||||||||||||||||||||||| || ||||| |||||||||||||| |
Sbjct 710 ATGAAGAAGGTCTTAAGATCCAGATCCAGACTTTAGGCGATACAGATCCACGAGTTGGAG 769
Query 775 AAACTTGCAGGTACTTAGCAGAAGCATATGTTCAAGCAATGCAGTTCAATAAAGCGGAAG 834
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 770 AAACTTGCAGGTACTTAGCAGAAGCATATGTTCAAGCAATGCAGTTCAATAAAGCGGAAG 829
Query 835 AGTTATGCAAGAAGACTCTAGAGATTCACCGAGCGCATAGTGAACCTGCTTCACTGGAGG 894
|||| |||||||| ||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 830 AGTTGTGCAAGAAAACTCTAGAGATTCACCGTGCTCATAGTGAACCTGCTTCACTGGAGG 889
Query 895 AAGCAGCTGATAGGAGATTGATGGCAATTATCTGCGAGGCTAAAGGAGATTATGAAAACG 954
| |||||||||||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct 890 AGGCAGCTGATAGGAGGCTGATGGCAATTATCTGTGAGGCTAAAGGAGATTATGAAAACG 949
Query 955 CTCTTGAGCATCTTGTTCTTGCTAGTATGGCTATGATTGCGAGTGGACAAGAATCTGAGG 1014
| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 950 CGCTTGAGCACCTTGTTCTTGCTAGTATGGCTATGATTGCGAGTGGACAAGAGTCTGAGG 1009
Query 1015 TTGCATCGATTGATGTTAGTATTGGGAATATTTACATGTCGCTGTGCCGGTTTGATGAAG 1074
||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct 1010 TTGCATCGATTGATGTTAGCATTGGGAATATTTACATGTCGTTGTGCCGGTTTGATGAAG 1069
Query 1075 CTGTGTTTTCATATCAGAAGGCTCTTACTGTGTTTAAGGCTTCTAAAGGAGAGACTCATC 1134
||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1070 CTGTGTTCTCTTATCAGAAGGCTCTCACTGTGTTTAAGGCTTCTAAAGGAGAGACTCATC 1129
Query 1135 CGACGGTTGCGTCAGTGTTTGTTAGATTGGCTGAGCTTTACCATAGAACAGGGAAACTTC 1194
|||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 1130 CGACGGTTGCATCAGTGTTTGTTAGATTGGCTGAGCTTTACCATAGGACAGGGAAACTCC 1189
Query 1195 GTGAGTCTAAGTCTTACTGTGAGAATGCGTTGAGGATATACAATAAGCCGGTGCCTGGGA 1254
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||
Sbjct 1190 GTGAGTCTAAGTCTTACTGTGAGAATGCGTTGAGGATATACAACAAGCCAGTGCCCGGGA 1249
Query 1255 CAACTGTGGAGGAGATTGCTGGTGGATTAACTGAGATTTCTGCTATTTATGAGTCTGTAG 1314
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1250 CAACTGTGGAGGAGATTGCTGGTGGATTAACTGAGATTTCTGCAATTTATGAGTCTGTAG 1309
Query 1315 ATGAACCTGAGGAAGCATTGAAGCTACTTCAGAAGTCTATGAAATTGCTTGAGGATAAGC 1374
||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 1310 ATGAACCTGAGGAAGCATTGAAGTTACTTCAGAAGTCGATGAAATTGCTTGAGGATAAGC 1369
Query 1375 CAGGACAGCAGAGCGCCATTGCAGGGTTAGAGGCACGGATGGGAGTTATGTATTACACAG 1434
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1370 CAGGACAACAGAGCGCCATTGCAGGGTTAGAGGCACGGATGGGAGTTATGTATTACACAT 1429
Query 1435 TGGGGAGGTACGAGGACGCAAGAAACGCGTTTGAGAGCGCTGTGACAAAGCTACGGGCAG 1494
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1430 TGGGGAGGTACGAGGACGCAAGAAACGCGTTTGAGAGTGCTGTGACAAAGCTACGGGCAG 1489
Query 1495 CAGGTGAGAAATCTGCCTTCTTCGGTGTTGTATTAAACCAGATGGGACTAGCCTGCGTTC 1554
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1490 CAGGTGAGAAATCTGCCTTCTTCGGTGTTGTATTAAACCAGATGGGACTAGCCTGCGTTC 1549
Query 1555 AGCTTTTCAAGATTGATGAAGCGGGTGAGCTGTTTGAAGAAGCAAGAGGTATTCTTGAAC 1614
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 1550 AGCTTTTCAAGATTGATGAGGCGGGTGAGCTGTTTGAAGAAGCAAGAGGCATTCTTGAAC 1609
Query 1615 AAGAACGTGGACCGTGCGATCAGGACACTCTCGGTGTTTATAGCAATCTAGCTGCTACCT 1674
||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 1610 AAGAACGTGGACCATGCGATCAGGACACTCTCGGTGTTTACAGCAATCTGGCTGCTACCT 1669
Query 1675 ATGACGCTATGGGAAGGATAGAGGATGCGATTGAGATATTAGAGCAGGTTCTGAAGCTGA 1734
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1670 ATGACGCCATGGGAAGGATAGAGGATGCGATTGAGATATTAGAGCAGGTTCTGAAGCTGA 1729
Query 1735 GAGAGGAAAAGCTCGGGACTGCGAATCCGGATTTTGAAGACGAGAAGAAACGTTTGGCCG 1794
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1730 GAGAGGAAAAGCTCGGGACTGCGAATCCGGATTTTGAGGACGAGAAGAAACGTTTGGCCG 1789
Query 1795 AGCTTTTGAAGGAAGCTGGGCGGTCGCGGAACTACAAAGCCAAGTCGCTCCAGAATCTGA 1854
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1790 AGCTTTTGAAGGAAGCTGGGCGGTCGCGGAACTACAAAGCCAAGTCGCTCCAGAATCTGA 1849
Query 1855 TTGATCCAAATGCAAGACCTCCGAAGAAAGAGTCTTCTGCTAAGAAATGGCCCAGCCTCG 1914
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1850 TTGATCCAAACGCAAGACCTCCAAAGAAAGAGTCTTCTGCTAAGAAATGGCCCAGCCTCG 1909
Query 1915 GTTTCAAGTTCTGAGGaaaaaattatcatataaaataaatcatccacatatatattcaat 1974
||||||||||||||| |||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 1910 GTTTCAAGTTCTGAG-AAAAAAGTATCATATATAATAAATCATCCACATATATATTCAAT 1968
Query 1975 attttattttattgttattgttat-attttttatctgatctattttctgtatCATAAT-C 2032
||||||||||||| |||||||| |||||| ||||||||| |||||||||||||||| |
Sbjct 1969 ATTTTATTTTATT---ATTGTTATCATTTTT-ATCTGATCTGTTTTCTGTATCATAATTC 2024
Query 2033 TGAGGTTGATGAATTAATTTCATGTATAGTGTTTTTATTTGAGTTTGGTGAAATACTGCC 2092
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2025 TGAGGTTGATGAGTTAATTTCATGTATAGTGTTTTTATTTGAGTTTGGTGAAATACTGCC 2084
Query 2093 AAGATGGTGAGCTGTTTGTTTGAGTTTGAAATTTCTTTAATTCAATCACTTTTTT 2147
|||||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2085 AAGATGTTGAGCTGTTTGTTTGAGTTTGAAATTTCTTTAAATCAATCACTTTTTT 2139
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81284582830
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5