BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G10850.1
Length=1110
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489928 jgi|Araly1|489928|fgenesh2_kg.6__3062__AT4G10850.1 1275 0.0
> Ahg489928 jgi|Araly1|489928|fgenesh2_kg.6__3062__AT4G10850.1
Length=947
Score = 1275 bits (690), Expect = 0.0
Identities = 768/807 (95%), Gaps = 0/807 (0%)
Strand=Plus/Plus
Query 43 TTCATCACCACCAATTACACTCAAAATTATGGTGTTTGCACATTTGAACCTTCTTCGGAA 102
||||||| |||||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct 1 TTCATCATCACCAATTACACTCAAAATTATGGTGGTTGCACATTTAAACCTTCTTCGGAA 60
Query 103 GATTGTGGGGATTATAGGAAACTTCATCGCTCTATGTCTGTTCTTGTCACCAACGCCAAC 162
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GATTGTGGGGATAATAGGAAACTTCATCGCTCTATGTCTGTTCTTGTCACCAACGCCAAC 120
Query 163 ATTTGTTCGGATAGTGAAAAAGAAGTCAGTGGAGGAATATTCACCAATACCGTATTTAGC 222
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ATTTGTCCGGATAGTGAAAAAGAAGTCAGTGGAGGAATATTCACCAATACCGTATTTAGC 180
Query 223 GACTCTTATAAACTGTTTGGTTTGGGTTCTTTACGGACTACCAACGGTGCATCCGGACAG 282
|||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 181 GACTCTCATAAACTGTTTGGTTTGGGTTCTTTACGGGCTACCAACGGTGCACCCGGACAG 240
Query 283 CACATTGGTCATTACAATAAACGGCACAGGGATCTTGATCGAAATCGTATTCCTTACGAT 342
||||||||| ||||||| ||||| || ||||| |||||||||||||| |||||||| ||
Sbjct 241 TACATTGGTCGTTACAATCAACGGAACGGGGATTTTGATCGAAATCGTTTTCCTTACCAT 300
Query 343 CTTTTTCGTTTATTGTGGCCGCCAAAAACAGCGGTTGATAATATCCGCTGTTATAGCGGC 402
||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct 301 ATTTTTCGTTTATTGTGGCCGCCAAAAACAACGGTTGGTAATATCCGCTGTTATAGCGGG 360
Query 403 TGAAACCGCGTTCATAGCTATTCTTGCGGTTTTGGTATTAACTCTCCAACACACTACCGA 462
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 361 TGAAACCGCGTTCATAGCTATTCTCGCGGTTTTGGTATTTACTCTCCAACACACTACCGA 420
Query 463 AAAACGTACTATGAGTGTTGGAATCGTATGTTGCGTTTTCAACGTTATGATGTACGCTTC 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 AAAACGTACTATGAGTGTTGGAATCGTATGTTGCGTTTTCAACGTTATGATGTACGCTTC 480
Query 523 TCCATTGTCTGTTATGAAAATGGTAATAAAAACAAAAAGTGTGGAGTTCATGCCGTTTTG 582
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TCCATTATCTGTTATGAAAATGGTAATAAAAACAAAAAGTGTGGAGTTCATGCCGTTTTG 540
Query 583 GTTATCGGTAGCTGGATTTCTAAACGCAGGCGTTTGGACAATTTATGCTCTCATGCCTTT 642
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 541 GTTATCGGTAGCTGGATTTCTAAACGCAGGCGTTTGGACCATTTATGCTCTCATGCCTTT 600
Query 643 CGACCCATTCATGGCTATACCAAATGGAATTGGATGTTTATTTGGGCTAGCTCAACTAAT 702
|||||||||||||||||||||||||||||| |||||||||||||| || |||||| ||||
Sbjct 601 CGACCCATTCATGGCTATACCAAATGGAATAGGATGTTTATTTGGACTGGCTCAATTAAT 660
Query 703 ATTGTATGGTGCCTACTATAAGTCCACCAAAAGAATAATGGCGGAAAGAGAAAACCAACC 762
|||||| |||||||||||||||||||| |||| |||| |||||||||||||||| ||| |
Sbjct 661 ATTGTACGGTGCCTACTATAAGTCCACAAAAAAAATATTGGCGGAAAGAGAAAAACAATC 720
Query 763 TGGTTACGTCGGTTTATCAAGTGCGATCGCTCGTACCGGATCTGAGAAAACCGCGAATAC 822
||||||| |||||||||||||||||||||||| ||| | |||||||||||||||||||||
Sbjct 721 TGGTTACATCGGTTTATCAAGTGCGATCGCTCATACTGAATCTGAGAAAACCGCGAATAC 780
Query 823 CAACCAAGAACCTAACAATGTTTAATT 849
||||||||||| |||||||||||||||
Sbjct 781 CAACCAAGAACTTAACAATGTTTAATT 807
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41363364945
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5