BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G10890.1 Length=1933 Score E Sequences producing significant alignments: (Bits) Value Ahg327243 jgi|Araly1|327243|fgenesh1_pm.C_scaffold_6002463 1177 0.0 Ahg942912 jgi|Araly1|942912|scaffold_603456.1 364 1e-99 > Ahg327243 jgi|Araly1|327243|fgenesh1_pm.C_scaffold_6002463 Length=873 Score = 1177 bits (637), Expect = 0.0 Identities = 801/878 (91%), Gaps = 19/878 (2%) Strand=Plus/Plus Query 721 ATGGCGGAGAAACAGAGATGGATTGCGATGTATACGAAACACCTCAAGCAGAAGCGAAAG 780 ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1 ATGGCGGAGAAGCAGAGATGGATTGCGATGTATACGAAGCACCTCAAGCAGAAGCGAAAG 60 Query 781 GTCTATCACGATGGCTTCCTTGATTTACATATCGCCAGAAAAAAGGTGATGCTTTATGAT 840 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 61 GTCTATCACGATGGCTTCCTTGATTTGCATATCGCCAGAAAAAAGGTGATGCTTTATGAT 120 Query 841 GAGGACGATAATCTACTTGAAAGCAGGACGCTTAAGGCATG-TGAAGTTGTGAACACAGG 899 ||| | |||||||||| || ||||| | || |||||| | |||||||||| ||||||| Sbjct 121 AAGGCCAATAATCTACTCGAGAGCAGAATACTAAAGGCA-GATGAAGTTGTGGACACAGG 179 Query 900 TGAAACACTCACATTTCAAGCATATCTTGTGGATATATGCGATCCTAAGGACGGAAGTAA 959 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 180 TGAAACACTCACATTTCAAGCATATCTTGTGGATATCTGCGATCCTAAGGACGGAAGTAA 239 Query 960 AGCTTCTTCTGAGCCAAAGGTTGAACCAAGTGATCAAAAATGTGCACGCAAACCATTTAC 1019 ||||| ||||| |||||||| |||||||||||||| |||| |||||||||||| | Sbjct 240 GGCTTCATCTGATCCAAAGGTCCAACCAAGTGATCAAGGGTGTGTGCGCAAACCATTTGC 299 Query 1020 AGTTCTCAGGCCAAATTTCAAGAAAAGTTCTCTTC-GTTGTGATGAGAAAAAACCTGACC 1078 |||||||||||||||||||||||||| |||||||| | |||||||||||||||||| ||| Sbjct 300 AGTTCTCAGGCCAAATTTCAAGAAAACTTCTCTTCAG-TGTGATGAGAAAAAACCTAACC 358 Query 1079 TTGTGAATAAATTTTCTTCGAAAAGTCTCAGCCCATCTCACAATATGATTAGAGTATTCA 1138 ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 359 TTGTGAATACATTTTCTTCAAAAAGTCTCAGCCCATCTCACAATATGATTAGAGTATTCA 418 Query 1139 AAAAGAGAGAACTGCATAAGTATGGGGCACTGACTCCAGAC--T-------CAACAACAA 1189 ||||||||||| |||| |||||||||||||||||||||||| | ||||||||| Sbjct 419 AAAAGAGAGAATTGCACAAGTATGGGGCACTGACTCCAGACACTATGAAGTCAACAACAA 478 Query 1190 AAGGTACTGTATCTCTTGGCTCAGTTGATAAAGAAAGCAATAACCACCCTTTGATCAACT 1249 ||||||||||| |||||||||| |||||||||||||||||||||||||| |||||| ||| Sbjct 479 AAGGTACTGTACCTCTTGGCTCTGTTGATAAAGAAAGCAATAACCACCCCTTGATCCACT 538 Query 1250 CTCCATGTACTGGAAGGTCT-GTTGTAGATTCAAGGTTAGAGAATTG-TAAGTTAAGCAA 1307 |||| || ||||||| ||| || | ||||||||||||||||||| | |||||||||||| Sbjct 539 CTCCGTGCACTGGAACGTCCAGT-GCAGATTCAAGGTTAGAGAAT-GATAAGTTAAGCAA 596 Query 1308 GGATGTTCCTCCACCCAAGCCTTTACGTGATGTAAATCAGATACTCTCCATTCTTCAGAA 1367 | | ||||||||| ||||||||||||||||||||||||||||||||||||||| |||| Sbjct 597 GAACATTCCTCCACACAAGCCTTTACGTGATGTAAATCAGATACTCTCCATTCTACAGAG 656 Query 1368 ACGGAATGCTACAGAGACATGTTCTGATAATAACATGCAAACATCTGTG-CTTTTGACAA 1426 |||||||| ||||||||||||||||||||||||| | ||||||| ||| |||| |||| Sbjct 657 ACGGAATGTTACAGAGACATGTTCTGATAATAACCCGAAAACATCAGTGTCTTTA-ACAA 715 Query 1427 AAGTACCTCCAGAATCTGAAACCAGCAAAAGACACAAAATGGAGTCTATTTCAACGAAAG 1486 ||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| Sbjct 716 AAGTACCTCCAGAATCTGATACCAGCAAAAGACACAAAATGGAGTCTGTTTCAACGAAAG 775 Query 1487 AAGCATCTACGGAACAAGTAATGGTGCAAGAAACCTCATCGGCCAGCACAAGAGGTTGCT 1546 ||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||| Sbjct 776 AAGCATCTACGGAACAAGTAATGATGAAAGAAGCCTCATCGGCCAGCACAAGAGGTTGCT 835 Query 1547 TAATGAGTGATCCTCCGAGTTTCGACCTCGGAATTTAA 1584 |||||||||||||||||||||| ||||||||||||||| Sbjct 836 TAATGAGTGATCCTCCGAGTTTTGACCTCGGAATTTAA 873 > Ahg942912 jgi|Araly1|942912|scaffold_603456.1 Length=271 Score = 364 bits (197), Expect = 1e-99 Identities = 242/263 (92%), Gaps = 5/263 (2%) Strand=Plus/Plus Query 1615 AAA-GAAGGGAAATGGCAGGACCGGCACAAGCAGCAAAGCAGTCAAGTGAAGTGCTAGGC 1673 ||| ||||| ||||||| ||||||| |||||| || |||||||||||||||||||||||| Sbjct 11 AAAGGAAGGTAAATGGCTGGACCGGGACAAGCGGCGAAGCAGTCAAGTGAAGTGCTAGGC 70 Query 1674 CAGCGGAAGTCGTTAGGGATATGTCCGTTGAGAGCGGCAGCGGTTGGAGCGGTGATAATC 1733 ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| Sbjct 71 CAGCGGAAGTCGTTAGGGATATGTCCGTTGAGAGCAGCAGCGGTTGGAGCAGTGATAATC 130 Query 1734 GGTGGAATTGGCTATGTGGTGTTGTACAGCAAGAAGAAGCCTGAAGCTTCAGCAGGTGAT 1793 |||||| ||||||| |||| ||||| ||||||||||||||||||||||||||||||||| Sbjct 131 GGTGGACTTGGCTACATGGTTTTGTATAGCAAGAAGAAGCCTGAAGCTTCAGCAGGTGAT 190 Query 1794 GTCGCTAAAGTTATGTCAGGCGTCGGTGGTACTCCTGAGAACACTCGTCCTCGTAATTGA 1853 ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||| Sbjct 191 GTCGCTAAAGTTATGTCAGGCGTTGGTGGGACTCCTGAGAACACTCGTCCTCGTAACTGA 250 Query 1854 GCGTCTCTCT-T-TAATTTGTTT 1874 || ||| ||| | |||||| ||| Sbjct 251 GCTTCT-TCTATATAATTT-TTT 271 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 72638097215 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5