BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G10890.1
Length=1933
Score E
Sequences producing significant alignments: (Bits) Value
Ahg327243 jgi|Araly1|327243|fgenesh1_pm.C_scaffold_6002463 1177 0.0
Ahg942912 jgi|Araly1|942912|scaffold_603456.1 364 1e-99
> Ahg327243 jgi|Araly1|327243|fgenesh1_pm.C_scaffold_6002463
Length=873
Score = 1177 bits (637), Expect = 0.0
Identities = 801/878 (91%), Gaps = 19/878 (2%)
Strand=Plus/Plus
Query 721 ATGGCGGAGAAACAGAGATGGATTGCGATGTATACGAAACACCTCAAGCAGAAGCGAAAG 780
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1 ATGGCGGAGAAGCAGAGATGGATTGCGATGTATACGAAGCACCTCAAGCAGAAGCGAAAG 60
Query 781 GTCTATCACGATGGCTTCCTTGATTTACATATCGCCAGAAAAAAGGTGATGCTTTATGAT 840
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 61 GTCTATCACGATGGCTTCCTTGATTTGCATATCGCCAGAAAAAAGGTGATGCTTTATGAT 120
Query 841 GAGGACGATAATCTACTTGAAAGCAGGACGCTTAAGGCATG-TGAAGTTGTGAACACAGG 899
||| | |||||||||| || ||||| | || |||||| | |||||||||| |||||||
Sbjct 121 AAGGCCAATAATCTACTCGAGAGCAGAATACTAAAGGCA-GATGAAGTTGTGGACACAGG 179
Query 900 TGAAACACTCACATTTCAAGCATATCTTGTGGATATATGCGATCCTAAGGACGGAAGTAA 959
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 180 TGAAACACTCACATTTCAAGCATATCTTGTGGATATCTGCGATCCTAAGGACGGAAGTAA 239
Query 960 AGCTTCTTCTGAGCCAAAGGTTGAACCAAGTGATCAAAAATGTGCACGCAAACCATTTAC 1019
||||| ||||| |||||||| |||||||||||||| |||| |||||||||||| |
Sbjct 240 GGCTTCATCTGATCCAAAGGTCCAACCAAGTGATCAAGGGTGTGTGCGCAAACCATTTGC 299
Query 1020 AGTTCTCAGGCCAAATTTCAAGAAAAGTTCTCTTC-GTTGTGATGAGAAAAAACCTGACC 1078
|||||||||||||||||||||||||| |||||||| | |||||||||||||||||| |||
Sbjct 300 AGTTCTCAGGCCAAATTTCAAGAAAACTTCTCTTCAG-TGTGATGAGAAAAAACCTAACC 358
Query 1079 TTGTGAATAAATTTTCTTCGAAAAGTCTCAGCCCATCTCACAATATGATTAGAGTATTCA 1138
||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 359 TTGTGAATACATTTTCTTCAAAAAGTCTCAGCCCATCTCACAATATGATTAGAGTATTCA 418
Query 1139 AAAAGAGAGAACTGCATAAGTATGGGGCACTGACTCCAGAC--T-------CAACAACAA 1189
||||||||||| |||| |||||||||||||||||||||||| | |||||||||
Sbjct 419 AAAAGAGAGAATTGCACAAGTATGGGGCACTGACTCCAGACACTATGAAGTCAACAACAA 478
Query 1190 AAGGTACTGTATCTCTTGGCTCAGTTGATAAAGAAAGCAATAACCACCCTTTGATCAACT 1249
||||||||||| |||||||||| |||||||||||||||||||||||||| |||||| |||
Sbjct 479 AAGGTACTGTACCTCTTGGCTCTGTTGATAAAGAAAGCAATAACCACCCCTTGATCCACT 538
Query 1250 CTCCATGTACTGGAAGGTCT-GTTGTAGATTCAAGGTTAGAGAATTG-TAAGTTAAGCAA 1307
|||| || ||||||| ||| || | ||||||||||||||||||| | ||||||||||||
Sbjct 539 CTCCGTGCACTGGAACGTCCAGT-GCAGATTCAAGGTTAGAGAAT-GATAAGTTAAGCAA 596
Query 1308 GGATGTTCCTCCACCCAAGCCTTTACGTGATGTAAATCAGATACTCTCCATTCTTCAGAA 1367
| | ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 597 GAACATTCCTCCACACAAGCCTTTACGTGATGTAAATCAGATACTCTCCATTCTACAGAG 656
Query 1368 ACGGAATGCTACAGAGACATGTTCTGATAATAACATGCAAACATCTGTG-CTTTTGACAA 1426
|||||||| ||||||||||||||||||||||||| | ||||||| ||| |||| ||||
Sbjct 657 ACGGAATGTTACAGAGACATGTTCTGATAATAACCCGAAAACATCAGTGTCTTTA-ACAA 715
Query 1427 AAGTACCTCCAGAATCTGAAACCAGCAAAAGACACAAAATGGAGTCTATTTCAACGAAAG 1486
||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 716 AAGTACCTCCAGAATCTGATACCAGCAAAAGACACAAAATGGAGTCTGTTTCAACGAAAG 775
Query 1487 AAGCATCTACGGAACAAGTAATGGTGCAAGAAACCTCATCGGCCAGCACAAGAGGTTGCT 1546
||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||
Sbjct 776 AAGCATCTACGGAACAAGTAATGATGAAAGAAGCCTCATCGGCCAGCACAAGAGGTTGCT 835
Query 1547 TAATGAGTGATCCTCCGAGTTTCGACCTCGGAATTTAA 1584
|||||||||||||||||||||| |||||||||||||||
Sbjct 836 TAATGAGTGATCCTCCGAGTTTTGACCTCGGAATTTAA 873
> Ahg942912 jgi|Araly1|942912|scaffold_603456.1
Length=271
Score = 364 bits (197), Expect = 1e-99
Identities = 242/263 (92%), Gaps = 5/263 (2%)
Strand=Plus/Plus
Query 1615 AAA-GAAGGGAAATGGCAGGACCGGCACAAGCAGCAAAGCAGTCAAGTGAAGTGCTAGGC 1673
||| ||||| ||||||| ||||||| |||||| || ||||||||||||||||||||||||
Sbjct 11 AAAGGAAGGTAAATGGCTGGACCGGGACAAGCGGCGAAGCAGTCAAGTGAAGTGCTAGGC 70
Query 1674 CAGCGGAAGTCGTTAGGGATATGTCCGTTGAGAGCGGCAGCGGTTGGAGCGGTGATAATC 1733
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 71 CAGCGGAAGTCGTTAGGGATATGTCCGTTGAGAGCAGCAGCGGTTGGAGCAGTGATAATC 130
Query 1734 GGTGGAATTGGCTATGTGGTGTTGTACAGCAAGAAGAAGCCTGAAGCTTCAGCAGGTGAT 1793
|||||| ||||||| |||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 131 GGTGGACTTGGCTACATGGTTTTGTATAGCAAGAAGAAGCCTGAAGCTTCAGCAGGTGAT 190
Query 1794 GTCGCTAAAGTTATGTCAGGCGTCGGTGGTACTCCTGAGAACACTCGTCCTCGTAATTGA 1853
||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||
Sbjct 191 GTCGCTAAAGTTATGTCAGGCGTTGGTGGGACTCCTGAGAACACTCGTCCTCGTAACTGA 250
Query 1854 GCGTCTCTCT-T-TAATTTGTTT 1874
|| ||| ||| | |||||| |||
Sbjct 251 GCTTCT-TCTATATAATTT-TTT 271
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72638097215
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5