BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G10895.1 Length=526 Score E Sequences producing significant alignments: (Bits) Value Ahg327245 jgi|Araly1|327245|fgenesh1_pm.C_scaffold_6002465 582 7e-166 > Ahg327245 jgi|Araly1|327245|fgenesh1_pm.C_scaffold_6002465 Length=426 Score = 582 bits (315), Expect = 7e-166 Identities = 395/432 (91%), Gaps = 12/432 (3%) Strand=Plus/Plus Query 9 ATGATAGAAAAATTTATAATATATTTTG-C-CTTGTTCGCCTTTTTAATCCAAAGAACAG 66 |||||||||||| |||||||||| ||| | |||||||||||||| |||||||||||||| Sbjct 1 ATGATAGAAAAAATTATAATATA--TTGCCTCTTGTTCGCCTTTTCAATCCAAAGAACAG 58 Query 67 ACTCTATTCTTACATTTAGACGTTTTAACATTGAAATTTCAAATCAACTTGGGGGTAACA 126 ||||||||||| |||||||||||||||||||||||||||||||||| |||| |||||||| Sbjct 59 ACTCTATTCTTGCATTTAGACGTTTTAACATTGAAATTTCAAATCATCTTGAGGGTAACA 118 Query 127 ATA-AACTTATGGTCCAGTGTAGATCTGGTCAG-GAA-TCGACCCGA-GTTGTTTTTCTT 182 | | |||||||||||||||||||||||||| | ||| ||||||| | |||||||||||| Sbjct 119 A-ACAACTTATGGTCCAGTGTAGATCTGGT--GTGAATTCGACCC-AGGTTGTTTTTCTT 174 Query 183 GCATTCAGTGATGTGTTCAAAGCTCCTTTAAGAATTGGGTTTAAGACATTGATATGGTGC 242 |||||||||| |||||||||| |||| ||| | ||| |||||||||||| |||||||| Sbjct 175 GCATTCAGTGGTGTGTTCAAATTTCCTATAATACTTGATTTTAAGACATTGGTATGGTGC 234 Query 243 ACCTTATGGAAGGGACCTGATTTTAAGCATCATGTAAGTTTTGACGCATTTGTTGGGAAA 302 | ||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||| Sbjct 235 AACTTATGGAAGGGACCTGATTTCAAGCAACATGTGAGTTTTGACGCATTTGTTGGGAAA 294 Query 303 GAGAGTTTTATACATGATGTATGTGGGAGTATGAAGCCTAACATATGTTTCTGGCAAGTG 362 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | Sbjct 295 GAGAGTTTTATACATGATGTATGTGGGAGTATGAAGCCTAACACATGTTTCTGGCAAGCG 354 Query 363 CAAGATGATGGAGTATGGGCACGTAATAATCCAACCGGAGCTCTCAAGTTAATGTATAAA 422 ||||| |||||| ||||||||||||||||||||||||| | ||||||||||||||||||| Sbjct 355 CAAGACGATGGAATATGGGCACGTAATAATCCAACCGGTGATCTCAAGTTAATGTATAAA 414 Query 423 TGGAATAAATAA 434 ||||||| |||| Sbjct 415 TGGAATACATAA 426 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 19154105678 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5