BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G10895.1

Length=526
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg327245 jgi|Araly1|327245|fgenesh1_pm.C_scaffold_6002465           582    7e-166


> Ahg327245 jgi|Araly1|327245|fgenesh1_pm.C_scaffold_6002465
Length=426

 Score =  582 bits (315),  Expect = 7e-166
 Identities = 395/432 (91%), Gaps = 12/432 (3%)
 Strand=Plus/Plus

Query  9    ATGATAGAAAAATTTATAATATATTTTG-C-CTTGTTCGCCTTTTTAATCCAAAGAACAG  66
            |||||||||||| ||||||||||  ||| | |||||||||||||| ||||||||||||||
Sbjct  1    ATGATAGAAAAAATTATAATATA--TTGCCTCTTGTTCGCCTTTTCAATCCAAAGAACAG  58

Query  67   ACTCTATTCTTACATTTAGACGTTTTAACATTGAAATTTCAAATCAACTTGGGGGTAACA  126
            ||||||||||| |||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct  59   ACTCTATTCTTGCATTTAGACGTTTTAACATTGAAATTTCAAATCATCTTGAGGGTAACA  118

Query  127  ATA-AACTTATGGTCCAGTGTAGATCTGGTCAG-GAA-TCGACCCGA-GTTGTTTTTCTT  182
            | | ||||||||||||||||||||||||||  | ||| ||||||| | ||||||||||||
Sbjct  119  A-ACAACTTATGGTCCAGTGTAGATCTGGT--GTGAATTCGACCC-AGGTTGTTTTTCTT  174

Query  183  GCATTCAGTGATGTGTTCAAAGCTCCTTTAAGAATTGGGTTTAAGACATTGATATGGTGC  242
            |||||||||| ||||||||||  |||| ||| | |||  |||||||||||| ||||||||
Sbjct  175  GCATTCAGTGGTGTGTTCAAATTTCCTATAATACTTGATTTTAAGACATTGGTATGGTGC  234

Query  243  ACCTTATGGAAGGGACCTGATTTTAAGCATCATGTAAGTTTTGACGCATTTGTTGGGAAA  302
            | ||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||
Sbjct  235  AACTTATGGAAGGGACCTGATTTCAAGCAACATGTGAGTTTTGACGCATTTGTTGGGAAA  294

Query  303  GAGAGTTTTATACATGATGTATGTGGGAGTATGAAGCCTAACATATGTTTCTGGCAAGTG  362
            ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct  295  GAGAGTTTTATACATGATGTATGTGGGAGTATGAAGCCTAACACATGTTTCTGGCAAGCG  354

Query  363  CAAGATGATGGAGTATGGGCACGTAATAATCCAACCGGAGCTCTCAAGTTAATGTATAAA  422
            ||||| |||||| ||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct  355  CAAGACGATGGAATATGGGCACGTAATAATCCAACCGGTGATCTCAAGTTAATGTATAAA  414

Query  423  TGGAATAAATAA  434
            ||||||| ||||
Sbjct  415  TGGAATACATAA  426



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19154105678


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5