BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G10910.1
Length=744
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489930 jgi|Araly1|489930|fgenesh2_kg.6__3064__AT4G10920.2 824 0.0
> Ahg489930 jgi|Araly1|489930|fgenesh2_kg.6__3064__AT4G10920.2
Length=1131
Score = 824 bits (446), Expect = 0.0
Identities = 542/587 (92%), Gaps = 12/587 (2%)
Strand=Plus/Minus
Query 1 GGATAAGGTAATAGTATTATGCACAGCGCGGAGTATCACATGCAA-G-TAGT-GAGATTA 57
||||||||||||| |||||| ||||||| |||||||||||||||| | ||| | |||||
Sbjct 1131 GGATAAGGTAATATTATTATACACAGCGTGGAGTATCACATGCAATGCAAGTAGTGATTA 1072
Query 58 AGAGACAACAAAGAGACTGTTTGATCAATCCTTGTCTGAGAGTTACTCTCTCTTTAGTAT 117
||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 1071 AGAGACAACGAAGAGACTGTTTGATCAATCCTTGTCTCAGAGTTACTCTCTATTTAGTAT 1012
Query 118 TTATAAACCT-A-TCTTGAACCAAAAACAATCAAATCAAACTCAAAAtttagttttaaac 175
||||||| || | ||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct 1011 TTATAAA-CTCATTCTTGAACCAAGAACAGTCAAATCAAACTCAAAATTTAGTTTTAAAC 953
Query 176 tctctgtttctttcttattttttc-ttca-tttttaGTTGCTGTGAAGATGGGGAATTGT 233
|||||| ||||||| | ||| ||| |||| ||||| ||| ||||||||||||||||||||
Sbjct 952 TCTCTGATTCTTTC-T-TTTCTTCTTTCATTTTTTTGTTTCTGTGAAGATGGGGAATTGT 895
Query 234 TCGCAAAGAGCAGTATCTGATGGTGGTGGTTCGGTTACCGTAATTGCGACAAATTCAAGA 293
||||||||||||||||| |||||||||||||||||||| |||||||||||| ||||||||
Sbjct 894 TCGCAAAGAGCAGTATCCGATGGTGGTGGTTCGGTTACTGTAATTGCGACAGATTCAAGA 835
Query 294 AACATCCTGGAAGAGTATTACAGAAGCCGGAGATGTAGCTCGTTGCCAATAACAAGGGAG 353
||||| ||||||| |||||||||||||||||||||||||||||||||||||| || |||
Sbjct 834 AACATTATGGAAGAATATTACAGAAGCCGGAGATGTAGCTCGTTGCCAATAACTAGAGAG 775
Query 354 AAAACACT-AGGGTATCTTGTTAGACAAGGTACAACAAGCCCTAGAGGAGTACTTGGGCC 412
||||| || ||||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 774 AAAAC-CTTAGGGTCTCTTGTTAGACAAGGCACAACAAGCCCTAGAGGAGTACTTGGGCC 716
Query 413 AAGGATACAAGTGTCGCCGCAAAGAAGAAATGGAGTTTGGAAAGCGAAAGTGGTGATCGG 472
|| |||||||||||| ||||||||||||||||| || |||||||||||||| ||||||||
Sbjct 715 AAAGATACAAGTGTCACCGCAAAGAAGAAATGGTGTGTGGAAAGCGAAAGTTGTGATCGG 656
Query 473 AAGTAAGCAGCTTGAAGAGATTTTGGCAGTTGAAGGCAATACACACGCTTTGATTGATCA 532
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 655 AAGTAAGCAGCTTGAAGAGATTTTGGCGGTTGAAGGCAATACACATGCTTTGATTGATCA 596
Query 533 GCTCCGGTTTGCTGCAGCAGAAGCTTTAGTTTCTTCAACCTCCGCCT 579
|||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 595 GCTCAGGTTTGCTGCAGCAGAAGCTTTAGTTTCTTCAACCTCTGCCT 549
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27410377323
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5