BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G10925.1
Length=1148
Score E
Sequences producing significant alignments: (Bits) Value
Ahg942918 jgi|Araly1|942918|scaffold_603462.1 1112 0.0
> Ahg942918 jgi|Araly1|942918|scaffold_603462.1
Length=743
Score = 1112 bits (602), Expect = 0.0
Identities = 685/725 (94%), Gaps = 5/725 (1%)
Strand=Plus/Plus
Query 187 GAGAAAACTGGACAACAAACCTATGCCGTCGACGCCGCTGGCTAACGGTGGTACGCCTCC 246
|||||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||
Sbjct 2 GAGAAAACTGGACAACAAACCTATGCCGTCGACGCCGCTGGCGAACGGTGTTTCGCCTCC 61
Query 247 TATGGGTGGCGGAGAGAGAAC-GACGGTTACAAC-T--TCCACGGTGGCGGATGATAAGC 302
| || |||||||||||||||| || ||||| | | ||||||||||||||||||||||
Sbjct 62 TCTGTGTGGCGGAGAGAGAACGGA-AGTTACGGCTTCCTCCACGGTGGCGGATGATAAGC 120
Query 303 CTGGAGTTTCGATGATGGAGCAGTTGGTTCCGGAAATTACGACACACGCGCTTAGTTACT 362
|||||||||| |||||||| ||||| |||||||||||||| || ||||||||||||||||
Sbjct 121 CTGGAGTTTCAATGATGGAACAGTTAGTTCCGGAAATTACAACCCACGCGCTTAGTTACT 180
Query 363 TGGATTATCCCAGTCTCTGTCGCTTATCCATGACTAATTCCTTGATGAGGAAAGCTGCTA 422
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TGGATTATCCTAGTCTCTGTCGCTTATCCATGACTAATTCCTTGATGAGGAAAGCTGCTA 240
Query 423 ATGATGATAATGCTTGGAAAGCTCTTTATCACAAGGATTTTACTCTGGAGCAAGATGGTA 482
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 241 ATGATGATAATGCTTGGAAAGCTCTTTATCACAAGGATTTTACGATGGAGCAAGATGGTA 300
Query 483 TAACACCAGTCAATGGGTGGAAAGAGTACTATGCAACTACTAGAGCGATTATTAGTGTGA 542
|||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 301 TAACTCCAGTCAATGGGTGGAAAGCTTACTATGCAACTACTAGAGCGATTATTAGTGTCA 360
Query 543 ATACGGAATTCTTCACCATCATTAGAGACAGAGCGCTTCAAGCGATGGCTCGGTTGTGGT 602
|||| |||||||||| |||||||||||||||||| ||||||||||||||||| || ||||
Sbjct 361 ATACTGAATTCTTCAGCATCATTAGAGACAGAGCTCTTCAAGCGATGGCTCGTTTATGGT 420
Query 603 TGAACTCGGACTATGTCAAGTGTATCCATGCCTCTGGCGAACTCTTCTCCGGGTACAATG 662
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 421 TGAACTCGGACTATGTTAAGTGTATCCATGCCTCTGGTGAACTCTTCTCCGGGTACAATG 480
Query 663 AAGTGATACAAAGCTGGCAACTTTGTTTCAATTGGGAACAAGGGTTTGACTTTCAGGTCC 722
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 481 AAGTGATGCAAAGCTGGCAACTTTGTTTCAACTGGGAACAAGGGTTTGACTTTCAGGTCC 540
Query 723 ACACGGTTCGCACTCGGATACTAACAGACATGGCTTGGGTCACCATGAAGGCATACCTGA 782
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 541 ACACGGTTCGCACTCGGATACTAACGGACATGGCTTGGGTCACCATGAAGGCATACCTGA 600
Query 783 ACGTGGATGGTGGTCCATTCCTAATAACCAATGTGTTCGAGTTCCACAATGGAAGGTGGC 842
||||||| |||||||||||||| |||||||||||||| |||||||| |||||||||||||
Sbjct 601 ACGTGGACGGTGGTCCATTCCTGATAACCAATGTGTTTGAGTTCCATAATGGAAGGTGGC 660
Query 843 ACATGGTTCATCATCACAGCTCAGTGATGCTCATCGATGATCAACAAGTTGTTGTTCATT 902
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 661 ACATGGTTCATCATCACAGCTCAGTGATGCTGATCGATGATCAACAAGTTGTTGTTCATT 720
Query 903 GATGA 907
|||||
Sbjct 721 GATGA 725
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42812035791
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5