BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G10930.1
Length=2986
Score E
Sequences producing significant alignments: (Bits) Value
Ahg942919 jgi|Araly1|942919|scaffold_603463.1 4553 0.0
> Ahg942919 jgi|Araly1|942919|scaffold_603463.1
Length=2993
Score = 4553 bits (2465), Expect = 0.0
Identities = 2819/2989 (94%), Gaps = 28/2989 (1%)
Strand=Plus/Plus
Query 1 ATGGAGACACAACCTGATACCTCACTAATGGAGACAAGAAAGTCCCTGGATATTTCTGAG 60
||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 21 ATGGAAACACAACCTGATACCTCACCAGTGGAGACAAGAAAGTCCCTGGATATTTCTGAG 80
Query 61 AAGACAAATAGCGGATGCTCAGTAGAGGCTGTTTACTCTGGAAACTTTTCAGTTACAGTT 120
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 81 AAGACAAATAGCGGATGCTCAGCAGAGGCTGTTTACTCTGGAAACTTTTCAGTTACAGTA 140
Query 121 GCTGATGACGGCGAGACAGCTCTTGTTGTATCAATAGTCAAAGGAGACGAGTCTCATATG 180
|||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 141 GCTGATGAAGGCGAGACAGCTCTTGTTGTATCAATAGTCAAAGGAGACAAGTCTCATATG 200
Query 181 GGACCAAGTGATACCAACCCATTGCCAGTTCAAGCTAAAATGGATGGAGACCCAGATAGT 240
| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 201 GAACCAAGTGATACCAACCCATTGCCAGTTGAAGCTAAAATGGATGGAGACCCAGATAGT 260
Query 241 TCGCATCTTAAAATTCTTTGTAGGGAGGAAAATACAGAGCAGGTCGCAGTCAAATCGGAA 300
|||||||| |||||||| |||||||||||||||||||| |||||| |||| ||||||||
Sbjct 261 TCGCATCTGAAAATTCTGTGTAGGGAGGAAAATACAGAACAGGTCCCAGTAAAATCGGAG 320
Query 301 CTCAACCAGTCCTTACCACATGATATATCATCAAGACTATCTTCTGATTCAGATCAACCA 360
||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 321 CTCAAGCAGTCCTTACCACATGATATATCATCAAGACTATCTTCTGATTCATATCAACCA 380
Query 361 TTTTTTGCTGCAGACATAGAGAATAGAGCAGACCCTGTTGTAGAGAAGGATTGTCTGTCG 420
||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 381 TTTTTTGCTGCAGACATGGAGAATAGAGCAGACCCTGTTGTAGAGAAGGACTGTCTGTC- 439
Query 421 A-TAGATGATaaaaaaaaTCTTTCCACTGCAGCCATTTCCAATTCAGATGTTGCC-AGTG 478
| ||||||||||||| ||||||||||| ||||||||||||||||||||||| || ||||
Sbjct 440 AGTAGATGATAAAAATGATCTTTCCACTACAGCCATTTCCAATTCAGATGTT-CCTAGTG 498
Query 479 TCATCAGCTTAAAGAGAAAGCATTCAGATTGCAGTGGGGATGATGGCAACTCAGAAACTA 538
| ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 499 TTGTCAGCTTAAAGAGAAAGTATTCAGATTGCAGTGGGGATGATGGCAATTCAGAAACTA 558
Query 539 AACCTGAGATTTACGAATCTCTCAATGAACTAAAACTGGAGGAAGAGGAAGAATTAACTA 598
|||||||||||||| || |||||||| ||| ||||||||||||||||||||||||| |||
Sbjct 559 AACCTGAGATTTACAAAGCTCTCAATAAACCAAAACTGGAGGAAGAGGAAGAATTAGCTA 618
Query 599 CCGTTCACCACGAGAGCAGATCCCCTTCAAACAATACAACTGTTGATATATTCAGCATTG 658
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 619 CCTTTCACCACGAGAGCAGATCCCCTTCAAACAATACAACTGTTGATATATTCAGCATTG 678
Query 659 TCAAAGGAACTGGCCGTAGAAAAAATCTCATGCGTTCAAATCCTACTGATAAGTCTTCAG 718
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 679 TCAAAGGAACTGGGCGTAGAAAAAATCTCATGCGTTCAAATCCTACTGATAAGTCTTCAG 738
Query 719 AAGCAGAGAATGCTGCTGGTTTGAGGGTAAAGAAGATCAAGAGGACACCGGAGGACGAGA 778
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 739 AAGGAGAGAATGCTGCTGGTTTGAGGGTAAAGAAGATCAAGAGGACACCGGAGGACGAGC 798
Query 779 AAGAGTCAATGGTTCTGGTTGAGAAACTAAGGAAAGAAATAAGAGAAGCCGTTCGTAACA 838
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 799 AAGAGTCAATTGTTCTGGTTGAGAAACTAAGGAAAGAAATAAGAGAAGCCGTACGTAACA 858
Query 839 AATCGATGGAGGACATCAGAGAAAACCAATTCGATCCAAAACTTTTGGCTGCCTTTAGAG 898
|||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct 859 AATCGATGGAGGACATCACAGAAAACCAATTCGATCCAAAACTTTTGGCCGCCTTTAGAG 918
Query 899 CTGCTGTGGCAGGACCTAAAACTGGTGAAGCACCTAGAAGA-AGTTCTGCTCTGGCTGTG 957
|||||||||||||||||||||||| |||||||||||||| | | ||| |||||||| |||
Sbjct 919 CTGCTGTGGCAGGACCTAAAACTGATGAAGCACCTAGAA-ATATTTCGGCTCTGGCAGTG 977
Query 958 AAGGCAAAGAAGTTGATGCTGCAGAAAGGAAAAGTCAGAGAGAATCTGACGAAGAAAATT 1017
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 978 AAGGCAAAGAAGTTGATGCTGCAAAAAGGAAAAGTCAGAGAGAATCTGACCAAGAAAATT 1037
Query 1018 TATGCAGATTTAAATGGGAAGCGAAAAAGTGCATGGCACCGGGACTGTGAAGTTGAGTTT 1077
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 1038 TATGCAGATTTAAATGGGAAGCGGAAGAGTGCATGGCACCGGGACTGTGAAGTTGAGTTT 1097
Query 1078 TGGAAGCATCGGTGCATACAAGGTAGAAAGCCTGAAAAAATTGAAACTCTGAAGTCTGTG 1137
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1098 TGGAAGCATCGGTGCATACAAAGTAGAAAGCCTGAAAAAATTGAAACTCTGAAGTCTGTT 1157
Query 1138 CTTAGCCTCTTGAAGAATAAACCAGCTGACACCAAAACAAACTTTTCATCTGAAACCCCA 1197
||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||||
Sbjct 1158 CTTAGCCTCTTGAAGAAGAAACCAGGTGATGCCAAAACAAACTTTTCATCTGAAACCCCA 1217
Query 1198 CAGGCCTCAAATCCTATCCTCTCCAGATTGTATTTGGCAGATACCTCCGTGTTCCCAAGA 1257
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1218 CAGGCCTCAAATCCTATCCTCTCCAGATTGTATTTGGCAGATACCTCCGTGTTCCCGAGA 1277
Query 1258 AATGATAATCTCAAGCCTCTTTTGGCACCGAAAGAAATGGGAAACTCACAAAACAATGGA 1317
|||||||||||||||||||| |||||||| ||||||| |||||||||||||||||||| |
Sbjct 1278 AATGATAATCTCAAGCCTCTGTTGGCACCAAAAGAAACGGGAAACTCACAAAACAATGCA 1337
Query 1318 AAACCCACAGAAGCCAGCAAGACCTTACCAAAAATTAGTGCTGCCAAGGGGAGCA-GTGT 1376
|||||||||||||||| ||| || |||||||| ||||||| |||||||||||||| || |
Sbjct 1338 AAACCCACAGAAGCCAACAAAACTTTACCAAAGATTAGTGATGCCAAGGGGAGCAGGT-T 1396
Query 1377 AAAAGCTGCTGGATCAAAACTGAACTCAGGAAACAAACAGTCGGATGGGCAACCCAATCT 1436
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1397 AAAAGCTGCTGGATCAAAACTGAACTCAGGAAACAAACAGTCGGATGGGCAACCTAATCT 1456
Query 1437 TACATCAAGTAACTCTAAGGAAATGGTTGAAAATCCTGACGATCTCAAGAAAGACAAAAG 1496
|||||| ||||| |||||||||||| |||| | |||||||||||||||||||||||||||
Sbjct 1457 TACATCGAGTAATTCTAAGGAAATGTTTGACATTCCTGACGATCTCAAGAAAGACAAAAG 1516
Query 1497 GAAATGGGCATTGCAGGTTCTTGCAAGAAAGAAAGCTTTAGCTGGCAACAACTCAACCCA 1556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1517 GAAATGGGCATTGCAGGTTCTTGCAAGAAAGAAAGCTTTAGCTGGCAACAACTCAACCCA 1576
Query 1557 AGACAAAGAAGGCTCTCCCGAGCTTAAAGGGAATTATCCATTGTTGGCTCAACTTCCAGC 1616
||| | |||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1577 AGATAGAGAAGGCTCTCCCGAGCTCAAAGGGAATTATCCATTGTTGGCTCAACTTCCAGC 1636
Query 1617 TGATATGAGACCAAGCCTTGCAACTAGTCGCCATAATAAAGTTCCTGTGGCAGTTAGGCA 1676
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||
Sbjct 1637 TGATATGAGACCAAGCCTTGCAACCAGTCGCCATAATAAAGTTCCTGTTGCAGTTAGACA 1696
Query 1677 GACACAATTATATCGCCTGACAGAACATTTATTAAAGAAAGAAAACCTTCTGACTATTCG 1736
|||||||||||||||||||||||||||||| ||||||||||||||||||||| || ||||
Sbjct 1697 GACACAATTATATCGCCTGACAGAACATTTCTTAAAGAAAGAAAACCTTCTGTCTGTTCG 1756
Query 1737 AAGAAGTGCAGCGACAGAACTAGCCGTTGCTGATGCTATAAATATCGAGAAGGCGATTGC 1796
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 1757 AAGAAGTGCAGCAACAGAACTAGCCGTTGCTGATGCTATAAATATCGAGAAAGCGATCGC 1816
Query 1797 TGACAAATCAAGTAGCAAAGTTGTGTATCTGAATCTATGCTCACAAGAAATACTGCATCA 1856
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1817 TGACAAATCAAGTAGCAAAGTTGTGTATCTGAATCTATGCTCACAAGAAATACTGCATCA 1876
Query 1857 TTCAGAGAGCAAAACGATGGATAATGCTGTAGAACCAAATTCGTCATCACCAATGGCTGA 1916
||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1877 TTCAGAGAGCAAAGCGATGGATAATGCTGTAGAACCGAATTCGTCATCACCAATGGCTGT 1936
Query 1917 TAGTGAGTCAGAACGTATAAGTAGTAAAGATTCAGATAATCCAGCCGTCCTTGAAGCGCT 1976
|| ||| |||||||||| ||| |||||||||||||| |||| |||||||||||||||||
Sbjct 1937 TAACGAGACAGAACGTATTAGTGGTAAAGATTCAGATGATCCCGCCGTCCTTGAAGCGCT 1996
Query 1977 CAGAGCAGCAGGTCTTGCTGATTCACCACCAAACAGCCCGACCCGTTCAGTAGAAGTTCT 2036
||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 1997 CAGAGCAGCAGGTCTTGCTGATTCACCACCAAACAGCCCAACCCGTTCAACAGAAGTTCC 2056
Query 2037 TCCAGAGAAAGGAGACAGTTCCTTGGACAAGACCAGGGAGACAGGCCCATATAATGTATT 2096
|||||||||||||||||||| ||||||||| | || || | |||||||| |||||||| |
Sbjct 2057 TCCAGAGAAAGGAGACAGTTTCTTGGACAA-AGCAAGG-G-CAGGCCCAGATAATGTACT 2113
Query 2097 TGACATGGATTCTGTTCCTGATACAGACATCTTTGGGGATTTTGAATATGAATTGGATGA 2156
|||| | ||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2114 TGACTTAGATTCCGTTCCTGATACAGACATCTTTGGGGATTTTGAGTATGAATTGGATGA 2173
Query 2157 AGAAGACTATTTCGGTGCTACAATGGCTAAAAAAGCTTCAGTAATGCAGCCGGATGAAAG 2216
|| ||| ||| | |||||||| ||| ||| |||||||||||||| |||||||||||||||
Sbjct 2174 AGGAGATTATATGGGTGCTACCATGACTACAAAAGCTTCAGTAACGCAGCCGGATGAAAG 2233
Query 2217 CTTGACTAAGGTGAAGGTAGTTTTATCCACTGTTCAACCTGGAAAGTCTTTGAATCCATC 2276
| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2234 CCTGACTAAGGTGAAGGTAGTTTTATCCACTGTTCAACCTGGAAAGTCTTTGAATCAATC 2293
Query 2277 CGAAGTCGTAGAG-GATGAAGAGACAACAACTGAAAACCTGAACGAGACCACAAATGGAA 2335
|||||||| | | ||||||||||||||||||||||||| ||| |||| ||||||||| |
Sbjct 2294 TGAAGTCGT-GGGTGATGAAGAGACAACAACTGAAAACCAGAAGGAGATCACAAATGGCA 2352
Query 2336 AAGAAGATGGAAAGAGCTTTGTTCCTATGGAGCTTGTACCTGAGGCTgagggagaaggag 2395
||||||||||||||||||||||||||||||||| |||||| ||||| ||||| |||||||
Sbjct 2353 AAGAAGATGGAAAGAGCTTTGTTCCTATGGAGCCTGTACCCGAGGCCGAGGGTGAAGGAG 2412
Query 2396 aaggagaaggagaaggagaaggagaaggagaagggggaggtgagaTCCTTTCTGTAGCTG 2455
|||||||||||||||||||||||||| | | | |||||||||||||||||||||||||
Sbjct 2413 AAGGAGAAGGAGAAGGAGAAGGAGAA-G-G-A---GGAGGTGAGATCCTTTCTGTAGCTG 2466
Query 2456 AATGTGAAGAACTATACGGACCTGGTACAGAGAAACTAGTTGA-AAGACCTCTCATCGAA 2514
||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |||
Sbjct 2467 AATGTGAAGAACTATACGGACCTGGTACAGAGAAACTAGTTGAGAA-ACCTCTCATTGAA 2525
Query 2515 GGATTTGCTGAGAATGGTGTTAAAGCTAAAGCCCCTGATTCAGAGTGCGAGAGCAACACA 2574
||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 2526 GGATTTGATGAGAATGGTGTTAAAGCTAAAGCACCTGATTCAGAGTGCGAGAGCCACACA 2585
Query 2575 CAGAGAGAGTTCATCGCTTCAAACTTTGAAATCACTTGCATTCAAGAGAAAAAACTTCCC 2634
|| |||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 2586 CACAGAGAGTTCATCGCTTCAAACTTTGAAATCCCTTCCATTCAAGAGAAAAAACTTCCC 2645
Query 2635 AGAAGCATTCAAAAGTGCAAACCAAGCGAAAAGCCGTCTAAAGAGGAAAAAGGCAAAGCT 2694
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2646 AGAAGCATTCAAAAGTGCAAACCAAGCGAAAAGCAGTCTAAAGAGGAAAAAGGCAAAGCT 2705
Query 2695 GATGGCTTTGGTAACTCCATCACCAAGAAGGTGGAAGCATACATCAAAGAACATATTAGA 2754
||||| |||||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct 2706 GATGGGTTTGGTAACTCCATCACCAAGAAGGTGGAAATATACATCAAAGAACATATCAGA 2765
Query 2755 CCACTGTGCAAGAGCGGAGTGATAAACGTGGAACAATACAGATGGGCAGTGACTAAAACC 2814
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2766 CCACTGTGCAAGAGCGGAGTGATAAACGTGGAACAATACAGATGGGCAGTGACGAAAACC 2825
Query 2815 ACAGAAAAAGTGATGAAGTATCATAGCAAAGCCAAGAGTGCTAACTTCTTGATCAAAGAA 2874
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2826 ACAGAGAAAGTGATGAAGTATCATAGCAAAGCCAAGAGTGCTAACTTCTTGATCAAAGAA 2885
Query 2875 GGAGACAAGATCAAGAAACTTGCCGAGCAATACGTCGAAACCGCTTCCTCTGGAGCTCAC 2934
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2886 GGAGACAAGATCAAGAAACTTGCCGAGCAATACGTCGAAACCGCTTCCTCTGGAGCTCAC 2945
Query 2935 CACAAGGATAAGTG-CAAGTG-AGA--A-AATCAGATGGCGTAAATAAG 2978
|||||||| ||| | |||| | | | | ||||| ||| ||||||||||
Sbjct 2946 CACAAGGACAAG-GACAAGGGCAAATGACAATCAAATG-CGTAAATAAG 2992
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 112747125200
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5