BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G10940.1
Length=579
Score E
Sequences producing significant alignments: (Bits) Value
Ahg327250 jgi|Araly1|327250|fgenesh1_pm.C_scaffold_6002470 889 0.0
> Ahg327250 jgi|Araly1|327250|fgenesh1_pm.C_scaffold_6002470
Length=579
Score = 889 bits (481), Expect = 0.0
Identities = 546/578 (94%), Gaps = 2/578 (0%)
Strand=Plus/Plus
Query 1 ATGGAGCTCGATTTTGACGCTAGTAACTTGGTTGAAGATGAAGCTGTTGAAGTTGAACAT 60
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 1 ATGGAGCTCGATTTTGACGTTAGTAACTTGGTTGAAGATGAAGCTGCTGAAGTTGAACAT 60
Query 61 AATGGTATGACTGAAATTGAAGGGGAAAGATGTGGAATTTGCATGGATATAATTATTGAT 120
|||| ||| ||| |||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 61 AATGACATGGCTGGTATTGAAGGGGAACGATGTGGGATTTGCATGGATATAATTATTGAT 120
Query 121 AGAGGCGTTCTTGATTGCTGTCAGCACTGGTTCTGCTTTGAATGCATTGATAATTGGTCT 180
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AGAGGCCTTCTTGATTGCTGTCAGCACTGGTTCTGCTTTGAATGCATTGATAATTGGTCT 180
Query 181 ACGATTATGAACCTCTGCCCTCTATGTCAGAGAGAGTTTCAGTTGATTACATGTGTCCCT 240
|||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 181 ACGATTATGAACCTATGCCCTCTCTGTCAGAGAGAGTTTCAGTTGATTACATGTGTACCT 240
Query 241 GTGTTTGATTCAGGTGAAAGCAGCAAGGTCGATGAGGATTTGGTA-TCAGGAGATGAAGA 299
|||| |||||||||||||||||||||||||||||||| ||| || ||||| ||||||||
Sbjct 241 GTGTATGATTCAGGTGAAAGCAGCAAGGTCGATGAGG-TTTCGTTGTCAGGCGATGAAGA 299
Query 300 TTGCTGCATTGAGGAGGAGACTGATGTCGTCTCTTCTCCGTCACACTATATTGACGATAC 359
|||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 300 TTGCTGCATTGAAGAGGAGACTGATGCCGTCTCTTCTCCGTCACACTATATTGACGATAC 359
Query 360 ACACTATATTGATGAAAATGCAGTTGTCTGTTTAGATGGAGATCTTTGCAAGATTCGTAA 419
||||||||||||||||||||||||| ||||||||||||| |||||||||||| | |||||
Sbjct 360 ACACTATATTGATGAAAATGCAGTTATCTGTTTAGATGGCGATCTTTGCAAGCTCCGTAA 419
Query 420 CACTTTCAGTTACATTGAAGGGGATTCAAACCTTGATACATCAATTGCTTGTGATTCGTG 479
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 420 CACTTTCAGTTACATTGAAGGGGATTCCAACCTTGATACATCAATTGCTTGTGATTCGTG 479
Query 480 TGATATGTGGTATCATGCTATTTGTGTGGGTTTTGACGTGGAAAATGCATCTGAGGATAC 539
||||| |||||||||||||||||| |||||||||||||| ||||||||||| ||||||||
Sbjct 480 TGATACGTGGTATCATGCTATTTGCGTGGGTTTTGACGTAGAAAATGCATCAGAGGATAC 539
Query 540 ATGGGTATGTCCGAGTAAAGACACTTTGTACCAATTCT 577
||||||||||||||||| |||||||||||||||| |||
Sbjct 540 ATGGGTATGTCCGAGTATAGACACTTTGTACCAAATCT 577
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21176351895
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5