BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G10950.1
Length=1319
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489935 jgi|Araly1|489935|fgenesh2_kg.6__3069__AT4G10950.1 1884 0.0
> Ahg489935 jgi|Araly1|489935|fgenesh2_kg.6__3069__AT4G10950.1
Length=1225
Score = 1884 bits (1020), Expect = 0.0
Identities = 1175/1246 (94%), Gaps = 25/1246 (2%)
Strand=Plus/Plus
Query 1 ATGTCGATCAAGCTTCTCGTTCTTGTTTTCTCTCTTCTGATAATCTTCACGAGACCCAAA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTCGATCAAGCTTCTCGTTCTTGTTTTCTCTCTTCTGATAATCTTCACGAGACCCAAA 60
Query 61 TTGATCGCCGATCATCACTTAACTACAAGAATCTCGCCGATTTATCCTTCGATTTCTACG 120
|||||||||||||||||||||||||||||||||| | | | || ||| ||
Sbjct 61 TTGATCGCCGATCATCACTTAACTACAAGAATCT---C------T-C--CG-TTT-TA-- 104
Query 121 TTTCAGCCTTCGATTCCGCCGTTTTTACCTCCATCGCCGTCGCGCAGAGCACAATCTCCG 180
| ||||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 105 --T---CCTTCGATTCCGCCGTTTTTACCTCCATCGCCGTCGCTCAGAGCCCAATCTCCG 159
Query 181 ACGGTGAAGCCGTCTTTGCCATTTGTACCGGCGTTGTTCGTTTTCGGAGATTCCTCAGTC 240
|||||||||||||||||| |||||||||||||||||||| ||||||||||| || ||
Sbjct 160 GTGGTGAAGCCGTCTTTGCCTTTTGTACCGGCGTTGTTCGTGTTCGGAGATTCTTCTGTA 219
Query 241 GATAGCGGAACCAATAACTTTCTTGGAACCTTAGCGAGAGCAGATCGGCTTCCCTACGGT 300
||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 220 GATAGTGGAACCAATAACTTTCTTGGAACCTTGGCGAGAGCAGATCGGCTTCCGTACGGT 279
Query 301 CGCGATTTCGATACGCATCAACCAACGGGAAGGTTTTGCAATGGAAGAATCCCAGTTGAT 360
| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 280 AGAGATTTTGATACGCATCAACCAACGGGAAGGTTTTGCAATGGAAGAATCCCAGTTGAT 339
Query 361 TATCTAGGCTTACCATTCGTTCCTAGCTATCTTGGACAAACTGGGACTGTTGAAGACATG 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 340 TATCTAGGCTTACCATTCGTTCCTAGCTATCTTGGACAAACTGGGACTGTTGAAGACATG 399
Query 421 TTTCAAGGAGTAAACTATGCATCAGCTGGTGCTGGAATCATCTTATCAAGTGGATCTGAA 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 400 TTTCAAGGAGTAAACTATGCATCAGCTGGTGCTGGAATCATCTTATCAAGTGGATCCGAA 459
Query 481 TTGGGCCAGCGGGTTTCATTTGCGATGCAAGTTGAGCAGTTTGTTGATACGTTTCAGCAG 540
||||||||||||||||||| |||||||| |||||||||||||||||||| || ||||||
Sbjct 460 CTGGGCCAGCGGGTTTCATTCGCGATGCAGGTTGAGCAGTTTGTTGATACATTCCAGCAG 519
Query 541 ATGATACTGAGTATTGGGGAGAAAGCTTCGGAACGTTTAGTGTCAAACTCGGTTTTCTAC 600
||||||||||||||||||||| | |||||||||||||| || ||||||||||||||||||
Sbjct 520 ATGATACTGAGTATTGGGGAGGAGGCTTCGGAACGTTTGGTCTCAAACTCGGTTTTCTAC 579
Query 601 ATATCGATTGGAGTGAATGATTACATACATTTCTACATCAGAAACATCTCCAATGTGCAG 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 580 ATATCGATTGGAGTGAATGATTACATACATTTCTACATCAGAAACATCTCCAATGTGCAG 639
Query 661 AATCTCTATACTCCATGGAATTTTAATCAGTTCTTGGCTTCTAATATGAGACAGGAGCTC 720
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 640 AATCTCTATACTCCTTGGAATTTTAATCAGTTCTTGGCTTCTAATATGAGACAGGAGCTC 699
Query 721 AAGACCTTGTACAATGTCAAGGTGAGGAGGATGGTGGTGATGGGACTGCCACCTATTGGC 780
|||||| |||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 700 AAGACCCTGTACAATGTTAAAGTGAGGAGGATGGTGGTGATGGGACTGCCACCTATTGGC 759
Query 781 TGTGCACCATACTACATGTGGAAATACAGAAGCCAGAACGGAGAATGTGCAGAAGAAGTG 840
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 760 TGTGCACCATACTACATGTGGAAATACAGGAGCCAGAACGGAGAATGTGCAGAAGAAGTG 819
Query 841 AACAGCATGATCATGGAATCCAACTTTGTCATGAGATACACTGTAGATAAACTCAACCGT 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 820 AACAGCATGATCATGGAATCCAACTTTGTCATGAGATACACTGTAGATAAACTCAACCGT 879
Query 901 GAGCTTCCAGGGGCATCCATTATCTACTGTGACGTGTTCCAAAGCGCTATGGACATTCTC 960
||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 880 GAGCTTCCAGGCGCATCCATTATCTACTGCGACGTGTTCCAAAGCGCTATGGACATCCTC 939
Query 961 AGGAACCACCAACACTACGGTTTTAATGAGACGACAGATGCGTGTTGTGGGCTAGGGAGG 1020
||||||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 940 AGGAACCACCAACTCTATGGTTTTAATGAGACGACAGATGCTTGTTGTGGGCTAGGGAGG 999
Query 1021 TACAAAGGATGGCTTCCATGCATCTCGCCGGAGATGGCTTGCTCTGACGCCTCCGGTCAC 1080
|||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 1000 TACAAAGGATGGCTTCCATGCATCTCACCGGAGATGGCTTGCTCCGACGCCTCCGGTCAT 1059
Query 1081 CTCTGGTGGGACCAGTTTCATCCTACAGACGCCGTTAACGCCATTCTAGCCGACAATGTA 1140
|| ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 1060 CTATGGTGGGACCAGTTTCATCCTACAGACGCCGTTAACGCCATCCTCGCCGACAATGTA 1119
Query 1141 TGGAATGGTCGCCACGTGGACATGTGTTACCCTACTAACCTAGAAACTATGCTTCATTCT 1200
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1120 TGGAATGGTCGTCACGTGGACATGTGTTACCCTACTAACCTAGAAACTATGCTTCACTCT 1179
Query 1201 TAAAT----CAGCTGAGAGGATAAAAATGTACATAAAAAACATAGT 1242
||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 1180 TAAATAAATCAGCTGAGAAAATAAAAATGTACATAAAAAACATAGT 1225
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49331054598
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5