BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G10960.1
Length=2827
Score E
Sequences producing significant alignments: (Bits) Value
Ahg942923 jgi|Araly1|942923|scaffold_603467.1 1724 0.0
Ahg942922 jgi|Araly1|942922|scaffold_603466.1 1520 0.0
Ahg492472 jgi|Araly1|492472|fgenesh2_kg.7__1905__AT4G23920.1 1046 0.0
> Ahg942923 jgi|Araly1|942923|scaffold_603467.1
Length=1096
Score = 1724 bits (933), Expect = 0.0
Identities = 1040/1092 (95%), Gaps = 6/1092 (1%)
Strand=Plus/Plus
Query 68 TCTGTTTCGT-A--ATGATGGCT-AGAAACGTTCTAGTAAGCGGTGGTGCTGGATACATC 123
|||||||||| | ||||||||| || ||||||||||||| |||||||||||||||||||
Sbjct 7 TCTGTTTCGTAACTATGATGGCTAAG-AACGTTCTAGTAACCGGTGGTGCTGGATACATC 65
Query 124 GGTAGTCACACGGTGCTTCAACTTCTTCTCGGTGGTTACTCCGTCGTAGTTGTTGATAAT 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 66 GGTAGTCACACGGTGCTTCAACTTCTTCTCGGTGGTTACTCCGTCGTAGTTGTTGATAAT 125
Query 184 CTCGATAATTCCTCCGCCGTCTCTCTTCAACGTGTGAAGAAACTCGCGGCTGAACACGGA 243
|||||||||||||| |||||||||||| ||||||||||||||||||| || ||||||||
Sbjct 126 CTCGATAATTCCTCAGCCGTCTCTCTTGAACGTGTGAAGAAACTCGCCGCCGAACACGGC 185
Query 244 GAACGCCTCTCCTTCCACCAGGTGGATCTTCGAGACAGGTCTGCTCTTGAGAAGATATTC 303
|||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 186 CAACGCCTCTCCTTCCACCAGGTGGATCTTCGAGACAAGCCTGCTCTTGAGAAGATATTC 245
Query 304 TCAGAAACAAAGTTTGATGCAGTGATACATTTTGCTGGACTTAAAGCAGTTGGTGAGAGT 363
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 246 TCAGAAACTAAGTTTGATGCAGTGATACATTTTGCTGGACTTAAAGCAGTTGGTGAGAGT 305
Query 364 GTAGAGAAGCCTTTGCTTTATTATAATAATAATCTTGTTGGTACTATTACTCTTTTGGAA 423
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 306 GTAGAGAAGCCTTTGCTCTATTATAATAATAATCTTGTTGGGACTATTACTCTTTTGGAA 365
Query 424 GTTATGGCTCAACATGGCTGCAAAAATCTTGTGTTTTCATCATCAGCAACTGTGTATGGC 483
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 366 GTTATGGCTCAACATGGCTGCAAAAATCTTGTGTTTTCATCATCAGCCACTGTGTATGGC 425
Query 484 TCTCCAAAAGAAGTTCCTTGTACAGAGGAGTTTCCAATTTCTGCTTTGAACCCATATGGA 543
|||||||| |||||||||||||||||||||||||| ||||| || |||||||||||||||
Sbjct 426 TCTCCAAAGGAAGTTCCTTGTACAGAGGAGTTTCCGATTTCAGCATTGAACCCATATGGA 485
Query 544 CGAACAAAGCTATTCATTGAGGAAATCTGCCGCGATGTATACGGTTCTGACCCGGAATGG 603
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 486 CGAACAAAGCTATTCATTGAGGAAATCTGCCGTGATGTATACGGTTCTGACCCGGAATGG 545
Query 604 AAGATTATATTGCTTAGGTATTTCAATCCTGTTGGTGCACATCCTAGTGGTGACATTGGT 663
||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 546 AAGATCATATTGCTTAGGTATTTTAATCCTGTTGGTGCACATCCTAGTGGTGAAATTGGT 605
Query 664 GAAGACCCTCGTGGTATTCCAAACAATCTCATGCCCTTTGTACAACAAGTGGCTGTTGGT 723
||||| ||||| ||| |||| |||||||| ||||| |||||||||||||| |||||||||
Sbjct 606 GAAGATCCTCGCGGTGTTCCCAACAATCTTATGCCTTTTGTACAACAAGTCGCTGTTGGT 665
Query 724 AGGAGACCTCATCTCACTGTCTTTGGAAATGATTACAATACAAAAGATGGAACAGGGGTT 783
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 666 AGGAGACCTCATCTAACTGTCTTTGGAAATGATTACAATACAAAAGATGGAACAGGGGTT 725
Query 784 CGAGATTACATTCATGTTATTGATTTAGCTGATGGACACATAGCGGCTCTACGTAAGCTA 843
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 726 CGAGATTACATTCATGTTATTGATTTAGCTGATGGACACATAGCGGCTTTGCGTAAGCTA 785
Query 844 GAAGATTGCAAGATCGGTTGTGAAGTGTACAATCTCGGAACAGGAAATGGAACATCAGTT 903
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 786 GAAGATTGCAAAATCGGTTGTGAAGTGTACAATCTCGGAACAGGAAATGGAACATCGGTT 845
Query 904 CTTGAAATGGTTGATGCTTTTGAAAAAGCATCCGGAAAGAAAATCCCTCTGGTGATCGCG 963
||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||
Sbjct 846 CTTGAAATGGTTGATGCCTTTGAAAAAGCGTCCGGGAAGAAAATCCCTCTGGTGATCGCT 905
Query 964 GGACGTCGACCGGGAGATGCTGAAGTTGTATACGCCTCGACGGAAAGAGCAGAAAGTGAA 1023
|||||||| |||||||||||||||||||| |||||||| ||||||||||||||| |||||
Sbjct 906 GGACGTCGCCCGGGAGATGCTGAAGTTGTTTACGCCTCAACGGAAAGAGCAGAACGTGAA 965
Query 1024 TTGAATTGGAAGGCCAAATATGGGATTGAGGAGATGTGTAGAGATTTGTGGAACTGGGCT 1083
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 966 TTGAATTGGAAGGCCAAATATGGAATTGAGGAGATGTGTAGAGATTTGTGGAACTGGGCC 1025
Query 1084 AGTAATAATCCTTATGGATATGATTCCTCTTCTGAAGACAACTCTCATTAACTTTTCTTA 1143
||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 1026 AGTAATAATCCTTATGGATATGATTCCTCTTCTGAAGACTCCTCTCATTAACTTT-CTTA 1084
Query 1144 ATCGTTTTCTTC 1155
|| |||||||||
Sbjct 1085 ATTGTTTTCTTC 1096
> Ahg942922 jgi|Araly1|942922|scaffold_603466.1
Length=1095
Score = 1520 bits (823), Expect = 0.0
Identities = 1003/1091 (92%), Gaps = 8/1091 (1%)
Strand=Plus/Plus
Query 1536 ACAGAAGAA-GAGAAAGGAATGATGATTAGTGAAAGAGATGATTTTAGTCTCACTGGACC 1594
||||||||| | |||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 2 ACAGAAGAAGGGGAAAGGAATGATGATTTGTGAAAGAGATGATTTCAGTCTCACTGGACC 61
Query 1595 ATTACACTTAACATCTATAGATTGGGCTAATGAACATCATCGACGATCCGTAGCTGGATC 1654
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 62 ATTACACTTAACATCCATAGATTGGGCTAATGAACATCATCGGCGATCCGTAGCTGGCTC 121
Query 1655 TTTGGTTCAAGGAATCTATGTAGCTGAGCGTGACCGTCAGCTACAAAGAGAAGGTCCTGA 1714
|||||||| ||||||||||||||||||||||| ||||| |||||||| || ||||||||
Sbjct 122 ATTGGTTCAGGGAATCTATGTAGCTGAGCGTGATCGTCAACTACAAAGGGACGGTCCTGA 181
Query 1715 GTTAGCTTTATCTCCAATATGGTCTGAGTTTTTCCATTTCCGCCTCATTCGTAAGTTTGT 1774
||||||| ||||||||||||||||||||||| ||||| ||||||||||| ||| ||||
Sbjct 182 ACTAGCTTTGTCTCCAATATGGTCTGAGTTTTTTCATTTTCGCCTCATTCGAAAGCTTGT 241
Query 1775 CGATGACGCGGATAACTCTATCTTCGGAGGAATCTATGAGTACAAACTGCCGCAAC-AGC 1833
|||||| ||||||||||||||||||||||||||||||||||| |||| |||||||| |
Sbjct 242 CGATGATGCGGATAACTCTATCTTCGGAGGAATCTATGAGTATAAACCGCCGCAACTA-A 300
Query 1834 TCTCTCAAACCGTCAAATCAATGGAATTTAGTCCACGTTTTGTGATTGCTTTCAGAGGAA 1893
|||||||||| |||||||| ||||| | ||||| ||||||||| |||||||||||||||
Sbjct 301 TCTCTCAAACTGTCAAATCTTTGGAACTGAGTCCGCGTTTTGTGGTTGCTTTCAGAGGAA 360
Query 1894 CGGTTACAAAAGTGGACTCCATTTCCCGTGACATCGAGCATGACATCCATGTTATTAGAA 1953
| ||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||
Sbjct 361 CAGTTACAAAAGTGGACTCTATTTCCCGTGACATTGAGCATGACATCCATGTTATCAGAA 420
Query 1954 ACGGGCTTCACACGACAACACGGTTTGAGATAGCTATCCAAGCAGTGAGAAACATTGTTG 2013
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 421 ACGGGCTTCACACGACAACACGGTTTGAGATAGCTATCCAAGCTGTGAGAAATATTGTTG 480
Query 2014 CTTCGGTTGGTGGTTCTAGTGTTTGGCTTGCTGGTCATTCTCTTGGTGCATCTATGGCAT 2073
|||||||||||||||||| ||| ||||||||||||||||||||||||||||| |||||||
Sbjct 481 CTTCGGTTGGTGGTTCTAATGTGTGGCTTGCTGGTCATTCTCTTGGTGCATCCATGGCAT 540
Query 2074 TACTTACCGGGAAAACCATCGCTAGAACCGG-GTTTTTTCCTGAGTGTTTCGCATTCAAT 2132
|||||||||| ||||| |||||||||||||| |||||| |||||||||||||| ||||||
Sbjct 541 TACTTACCGGAAAAACAATCGCTAGAACCGGAGTTTTT-CCTGAGTGTTTCGCCTTCAAT 599
Query 2133 CCGCCGTTTTTGTCTGCCCCTATCGAAAAAATTAAGGATAAGAGGATTAAACATGGGATA 2192
|||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||
Sbjct 600 CCGCCGTTTTTGTCTGCCCCTATCGAAAAAATCAAGGATAAGAGGATCAAACACGGGATT 659
Query 2193 CGCATTGCAGGCAGTGTGATCACAGCTGGACTTGCTCTAGCCAAAAAAGCCACCCAACAC 2252
|| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 CGTATCGCAGGAAGTGTGATCACAGCTGGACTTGCTCTAGCCAAAAAAGCCACCCAACAA 719
Query 2253 TACAGCCAAAACGACCGTGCATTACCCGCACCTCCTGATCCATTTGAA-GCTTTATCCGA 2311
|||||||||||||||||||||| ||||||| | || ||||||||| | || ||||||||
Sbjct 720 TACAGCCAAAACGACCGTGCATCACCCGCAACACCCGATCCATTT-ACCGCCTTATCCGA 778
Query 2312 CTGGTTCCCGCGGCTGTATGTCAACCCTGGTGACCACTTATGCTCAGAGTATGTTGGTTA 2371
|||||| ||||||||||| |||||||||| ||||| || |||||||| ||| | |||||
Sbjct 779 CTGGTTTCCGCGGCTGTACATCAACCCTGGAGACCATTTGTGCTCAGAATATATCGGTTA 838
Query 2372 CTTTGAGCACCGAAACAAGATGGAAGAAATCGGGATTGGGTTTGTAGAGCGGGTAGCGAC 2431
||| |||||||||| ||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 839 CTTCGAGCACCGAAGCAAGATGGAAGAAATCGGGATCGGGTTTGTCGAGCGGGTAGCGAC 898
Query 2432 GCAGCACTCGTTGGGCGGTATGCTGTTAGGAGGACAAGAGCCGGTACATCTGATTCCATC 2491
|| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 899 ACAACACTCGTTGGGCGGTATGCTGTTAGGAGGAAAAGAGCCGGTACATCTGATTCCATC 958
Query 2492 TTCGGTTTTGACGGTGAACTTAAGCTCCTCGAGAGATTTCAAACAAGCTCATGGGATTCA 2551
||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 959 TTCGGTTTTAACGGTGAACTTAAGCTCGTCAAGAGATTTCAAACAAGCTCATGGGATTCA 1018
Query 2552 TCAGTGGTGGAGGGAAGATAACAAGTTTGAGACTAAAGTTTACCAGTACAAATGATT-TG 2610
|||||||||||| |||||| | ||||||||||| ||||| ||||||||||||||||| ||
Sbjct 1019 TCAGTGGTGGAGAGAAGATCAGAAGTTTGAGACCAAAGTCTACCAGTACAAATGATTATG 1078
Query 2611 TATCAGttttt 2621
|||||||||||
Sbjct 1079 TATCAGTTTTT 1089
> Ahg492472 jgi|Araly1|492472|fgenesh2_kg.7__1905__AT4G23920.1
Length=1292
Score = 1046 bits (566), Expect = 0.0
Identities = 892/1050 (85%), Gaps = 20/1050 (2%)
Strand=Plus/Plus
Query 77 TAATGATGGC-TAGAAACGTTCTAGTAAGCGGTGGTGCTGGATACATCGGTAGTCACACG 135
||| |||||| || ||| || | || | ||| || ||||| |||||||| ||||| ||
Sbjct 93 TAACGATGGCGAAG-AACATTTTGGTTACCGGCGGCGCTGGTTACATCGGGAGTCATACT 151
Query 136 GTGCTTCAACTTCTTCTCGGTGGTTACTCCGTCGTAGTTGTTGATAATCT-CGATAATTC 194
|| |||||||| || ||||||||||||| ||| |||||||| ||| | ||| |||||
Sbjct 152 GTACTTCAACTGCTAGAAGGTGGTTACTCCGCCGTCGTTGTTGACAAT-TACGACAATTC 210
Query 195 CTCCGCCGTC-TCTCTTCAACGTGTGAAGAAACTCG-CGGCTGAACACGGAGAA-CGCCT 251
|||||| | | || ||||| || |||||| |||||| |||| ||| ||||| || |||||
Sbjct 211 CTCCGCTG-CTTCGCTTCAGCGCGTGAAGGAACTCGCCGGC-GAAAACGGA-AACCGCCT 267
Query 252 CTCCTTCCACCAGGTGGATCTTCGAGACAGGTCTGCTCTTGAGAAGATATTCTCAGAAAC 311
||| || |||||||||||||||||||||||| |||| ||||||||||| |||||||||||
Sbjct 268 CTCTTTTCACCAGGTGGATCTTCGAGACAGGCCTGCGCTTGAGAAGATTTTCTCAGAAAC 327
Query 312 AAAGTTTGATGCAGTGATACATTTTGCTGGACTTAAAGCAGTTGGTGAGAGTGTAGAGAA 371
|||||||||||||||||||| |||||||||||||||||||| || |||||||| |||||
Sbjct 328 TAAGTTTGATGCAGTGATACACTTTGCTGGACTTAAAGCAGTAGGCGAGAGTGTGGAGAA 387
Query 372 GCCTTTGCTTTATTATAATAATAATCTTGTTGGTACTATTACTCTTTTGGAAGTTATGGC 431
|||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 388 GCCTCTGCTCTATTATAATAATAATCTTGTTGGTACTATTACTCTTTTGGAGGTTATGGC 447
Query 432 TCAACATGGCTGCAAAAATCTTGTGTTTTCATCATCAGCAACTGTGTATGGCTCTCCAAA 491
|||| | |||||||||||||||||||||||||||||||| ||||| ||||||| || ||
Sbjct 448 TCAATACGGCTGCAAAAATCTTGTGTTTTCATCATCAGCTACTGTCTATGGCTGGCCTAA 507
Query 492 AGAAGTTCCTTGTACAGAGGAGTTTCCAATTTCTGCTTTGAACCCATATGGACGAACAAA 551
||| |||||||| || ||||||| ||||||||||| ||||||||||| || |||||
Sbjct 508 AGAGGTTCCTTGCACTGAGGAGTCCCCAATTTCTGCCACAAACCCATATGGCCGTACAAA 567
Query 552 GCTATTCATTGAGGAAATCTGCCGCGATGTATA-CGGTTCTGACCCGGAATGGAAGATTA 610
||| || || ||||| || ||||| |||||| | || ||||||||| ||||||||||| |
Sbjct 568 GCTTTTTATCGAGGAGATTTGCCGGGATGTACATCG-TTCTGACCCTGAATGGAAGATCA 626
Query 611 TATTGCTTAGGTATTTCAATCCTGTTGGTGCACATCCTAGTGGTGACATTGGTGAAGACC 670
|||||||||| || ||||| |||||||||||||||||||||||| ||||||||||||| |
Sbjct 627 TATTGCTTAGATACTTCAACCCTGTTGGTGCACATCCTAGTGGTTACATTGGTGAAGATC 686
Query 671 CTCGTGGTA-TTCCAAACAATCTCATGCCCTT-TGTACAACAAGTGGCTGTTGGTAGGAG 728
||| ||| | |||| |||||||||||||| || ||| |||||||| || ||||| ||||
Sbjct 687 CTCTTGG-AGTTCCCAACAATCTCATGCC-TTATGTCCAACAAGTTGCAGTTGGCCGGAG 744
Query 729 ACCTCATCTCACTGTCTTTGGAAATGATTACAATACAAAAGATGGAACAGGGGTTCGAGA 788
|||||| || ||||||||||||| || ||||| ||||| || || ||||||||| ||||
Sbjct 745 ACCTCACCTTACTGTCTTTGGAACCGACTACAAAACAAAGGACGGTACAGGGGTTAGAGA 804
Query 789 TTACATTCATGTTATTGATTTAGCTGATGGACACATAGCGGCTCTACGTAAGCTAGAAGA 848
|||||||||||| ||||||||||| |||||||| ||||| ||||| || |||||||| ||
Sbjct 805 TTACATTCATGTCATTGATTTAGCGGATGGACATATAGCCGCTCTGCGCAAGCTAGATGA 864
Query 849 T-TGCAAGATCGGTTGTGAAGTGTACAATCTCGGAACAGGAAATGGAACATCAGTTCTTG 907
| | ||| ||| ||||||| || |||||||||||||| || |||||||| || || || |
Sbjct 865 TCT-CAAAATCAGTTGTGAGGTATACAATCTCGGAACGGGTAATGGAACGTCGGTCCTAG 923
Query 908 AAATGGTTGATGCTTTTGAAAAAGCATCCGGAAAGAAAATCCC-TCTGGTGATCGCGGGA 966
||||||||| ||| ||||||||||||||||||||||||||||| | ||||||| || |||
Sbjct 924 AAATGGTTGCTGCCTTTGAAAAAGCATCCGGAAAGAAAATCCCGT-TGGTGATGGCTGGA 982
Query 967 CGTCGACCGGGAGATGCTGAAGTTGTATACGCCTCGACGGAAAGAGCAGAAAGTGAATTG 1026
| || || ||||| ||||||||||| |||||||| ||||||| ||||||| | ||| ||
Sbjct 983 AGACGTCCTGGAGACGCTGAAGTTGTTTACGCCTCAACGGAAAAAGCAGAACGCGAACTG 1042
Query 1027 AATTGGAAGGCCAAATATGGGATTGAGGAGATGTGTAGAGATTTGTGGAACTGGGCTAGT 1086
||||||||||| || |||||||| |||||||||||||| ||| | ||||| ||||| ||
Sbjct 1043 AATTGGAAGGCTAAGTATGGGATAGAGGAGATGTGTAGGGATCTATGGAATTGGGCAAGC 1102
Query 1087 AATAATCCTTATGGATATGATTCCTCTTCT 1116
||||| ||||| || || ||||||| |||
Sbjct 1103 AATAACCCTTACGGCTACAATTCCTCCTCT 1132
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 106690776245
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5