BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G10970.6
Length=846
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489939 jgi|Araly1|489939|fgenesh2_kg.6__3073__AT4G10970.1 455 3e-127
> Ahg489939 jgi|Araly1|489939|fgenesh2_kg.6__3073__AT4G10970.1
Length=800
Score = 455 bits (246), Expect = 3e-127
Identities = 297/319 (93%), Gaps = 13/319 (4%)
Strand=Plus/Plus
Query 1 ATGGACATGTCTTTAGATGAGATTATCAAGATGGAAAAGAGCAATACCAATGTGAATAAG 60
|||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 81 ATGGACATGTCTTTAGATGAAATTATCAAGATGGAAAAGAGCAATAGCAATGTGAATAAA 140
Query 61 GGCAAGAAACAGAGAGTATTGAATAAAAAGGAGAAATTTAGTGGTGCTGCGAAGAATAGT 120
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 141 GGCAAGAAACAGAGAGTATCGAATAAAAAGGAGAAATTTAATGGTGCTGCGAAGAATAGT 200
Query 121 GCGGTGAAAGCACAGCGTTATATGGACTCTCGGTCTGATGTTAGACAGGGTGCTTTTGCT 180
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 201 GCGGTGAAAGCACAGCGTTATATGGACTCACGGTCTGATGTTAGACAGGGTGCTTTTGCT 260
Query 181 AAGAAGA-GGTCTAATTTCCAAGG-AA---A--CCAGTTTCCTGTAACAACAACCGTTGC 233
|||| || |||||||||||||||| || | |||||||||||||||||| ||||||||
Sbjct 261 AAGA-GAAGGTCTAATTTCCAAGGGAACGGAAACCAGTTTCCTGTAACAACTACCGTTGC 319
Query 234 TCGTAAAGCCGCTTCTGCTACTC--CGC-GTGGTAGACCTTATAATGG-TGGAAGGATGA 289
|||||||||||||||||||| || | | |||||||||||||||| || |||||||||||
Sbjct 320 TCGTAAAGCCGCTTCTGCTAATCAACTCCGTGGTAGACCTTATAA-GGCTGGAAGGATGA 378
Query 290 CTAATACGAATCAATCAAG 308
|||||||||||||||||||
Sbjct 379 CTAATACGAATCAATCAAG 397
Score = 414 bits (224), Expect = 4e-115
Identities = 273/296 (92%), Gaps = 5/296 (2%)
Strand=Plus/Plus
Query 555 GTTTATTGCTCCACCAGCTCAGAATAGAGCTTCACAAAGAGGGTTTGTC-GGAA-a-gca 611
||||||| |||||||||||||||||||| || ||||||||||||||||| || | ||
Sbjct 398 GTTTATTACTCCACCAGCTCAGAATAGATCTGCACAAAGAGGGTTTGTCACTAAGACACA 457
Query 612 gcagcagcagcaaagggagaagatagtgcagcagcaggcaaatggaggaggaggagggca 671
|||||||||||||||||||||||||| |||| |||| ||||||||||||||||| |||||
Sbjct 458 GCAGCAGCAGCAAAGGGAGAAGATAGAGCAGAAGCAAGCAAATGGAGGAGGAGGTGGGCA 517
Query 672 AAGGCAATGGCCTCAGACACTGGATTCTCGGTTTGCAAACATGAAGGAAGAGAGAATGAG 731
|| |||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||
Sbjct 518 GAGACAATGGCCTCAGACGCTGGACTCTCGGTTTGCGAACATGAAGGAAGAGAGAATGAG 577
Query 732 AATGAGAAGGTTTGCAGACAATAGAAGCAATGTAGGCAACAATGGAGCTGGATCT-CATC 790
||||||||||||||||||||||||||||||||||||||||||||| ||||||| | || |
Sbjct 578 AATGAGAAGGTTTGCAGACAATAGAAGCAATGTAGGCAACAATGGCGCTGGAT-TGCAGC 636
Query 791 AGCAGCAGCGTTCGATGGTCCCGTGGGTGAGAAGAGCTACAAGATTCCCCAACTGA 846
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 637 AGCAGCAGCGTTCGATGGTCCCGTGGGTGAGAAGAGCTACAAGATTCCCTAACTGA 692
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31298914857
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5