BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G11010.1
Length=980
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489940 jgi|Araly1|489940|fgenesh2_kg.6__3074__AT4G11010.1 1279 0.0
Ahg492474 jgi|Araly1|492474|fgenesh2_kg.7__1907__AT4G23900.1 104 1e-21
> Ahg489940 jgi|Araly1|489940|fgenesh2_kg.6__3074__AT4G11010.1
Length=911
Score = 1279 bits (692), Expect = 0.0
Identities = 754/784 (96%), Gaps = 3/784 (0%)
Strand=Plus/Plus
Query 5 TCTCCACATTTTCCAAGGCTTCAGTTTCACTTCATCA--CACTCTCTGCaaaaaaacaaa 62
||||||||||||||||||||||||||||||||||||| | |||||||||||| || |||
Sbjct 1 TCTCCACATTTTCCAAGGCTTCAGTTTCACTTCATCACTCTCTCTCTGCAAAACAA-AAA 59
Query 63 aaTGAGCTCTCAAATCTGCAGATCTGCTTCCAAAGCAGCCAAATCTCTTCTCTCTTCAGC 122
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 60 AATGAGCTCCCAAATCTGCAGATCTGCTTCCAAAGCAGCCAAATCTCTTCTTTCTTCAGC 119
Query 123 TAAAAATGCTCGCTTCTTCTCTGAAGGACGAGCCATTGGTGCTGCGGCAGCGGTTTCGGC 182
|||||||||||| |||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct 120 TAAAAATGCTCGTTTCTTCTCCGAAGGAAGAGCCATTGGTGCTGCGGCAGCGGTTTCGGC 179
Query 183 GTCAGGAAAAATTCCTTTGTATGCATCTAACTTTGCAAGATCATCAGGTTCTGGTGTTGC 242
||| || || ||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 180 GTCGGGGAAGATTCCTTTGTATGCATCTAACTTTGTAAGATCATCAGGTTCTGGTGTTTC 239
Query 243 TTCTAAGAGTTGGATCACTGGACTCTTAGCTCTTCCTGCTGCAGCTTATATGATTCAAGA 302
|| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 240 CTCAAAGAGTTGGATCACTGGACTCTTAGCTCTTCCTGCTGCAGCCTATATGATTCAAGA 299
Query 303 TCAAGAGGTTCTTGCTGCTGAGATGGAACGAACTTTTATTGCTATCAAGCCTGATGGTGT 362
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 300 TCAAGAGGTTCTTGCTGCTGAGATGGAACGAACTTTTATCGCTATCAAGCCTGATGGAGT 359
Query 363 GCAAAGAGGACTGATATCAGAGATCATTTCTCGATTCGAACGCAAGGGATTCAAGCTAGT 422
||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 360 GCAGCGAGGACTGATATCAGAGATCATTTCTCGATTCGAACGCAAGGGATTCAAGCTTGT 419
Query 423 TGGTATCAAAGTCATTGTTCCTTCTAAAGATTTCGCACAAAAGCATTACCATGATCTTAA 482
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 420 TGGTATCAAAGTCATTGTTCCTTCCAAAGATTTCGCACAAAAGCATTACCATGATCTTAA 479
Query 483 GGAAAGACCTTTCTTCAATGGTTTGTGTGACTTCCTTAGCTCTGGTCCTGTTATTGCCAT 542
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 480 GGAAAGACCTTTCTTCAATGGCCTGTGTGACTTCCTTAGCTCTGGTCCTGTTATTGCCAT 539
Query 543 GGTCTGGGAAGGAGATGGTGTGATCAGATACGGACGTAAACTGATTGGAGCCACTGATCC 602
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 540 GGTCTGGGAAGGAGATGGTGTGATCAGATACGGACGTAAACTAATTGGAGCCACTGATCC 599
Query 603 TCAGAAATCTGAGCCTGGAACAATCCGAGGAGATCTTGCAGTTACTGTTGGCAGGAACAT 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TCAGAAATCTGAGCCTGGAACAATCCGAGGAGATCTTGCAGTTACTGTTGGCAGGAACAT 659
Query 663 AATCCATGGAAGTGATGGACCAGAGACTGCAAAGGATGAGATCAGTCTGTGGTTTAAGCC 722
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 660 AATCCATGGAAGTGATGGACCAGAGACAGCAAAGGATGAGATCAGTCTGTGGTTTAAGCC 719
Query 723 TCAAGAACTTGTTTCTTACACTAGTAACTCTGAGAAGTGGCTCTATGGTGACAACTAAAT 782
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 720 TCAAGAACTTGTTTCTTACACCAGTAACTCTGAGAAGTGGCTCTATGGCGACAACTAAAT 779
Query 783 CCCT 786
||||
Sbjct 780 CCCT 783
Score = 60.2 bits (32), Expect = 3e-08
Identities = 32/32 (100%), Gaps = 0/32 (0%)
Strand=Plus/Plus
Query 949 TTTGAATCTATATTGTTCAATTCTTCTCTCTT 980
||||||||||||||||||||||||||||||||
Sbjct 880 TTTGAATCTATATTGTTCAATTCTTCTCTCTT 911
> Ahg492474 jgi|Araly1|492474|fgenesh2_kg.7__1907__AT4G23900.1
Length=937
Score = 104 bits (56), Expect = 1e-21
Identities = 75/84 (89%), Gaps = 2/84 (2%)
Strand=Plus/Plus
Query 61 aaaaTGAGCTCTCAAATCTGCAGATCTGCTTCCAAAGCAGC-CAAATCTCTTCTCTCTTC 119
|||||||||||||||||||||||||||||||||| |||||| | |||||||| |||||
Sbjct 43 AAAATGAGCTCTCAAATCTGCAGATCTGCTTCCAGAGCAGCGCGG-TCTCTTCTTTCTTC 101
Query 120 AGCTAAAAATGCTCGCTTCTTCTC 143
||| || |||||||| ||||||||
Sbjct 102 AGCCAAGAATGCTCGTTTCTTCTC 125
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36407385735
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5