BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G11040.1 Length=919 Score E Sequences producing significant alignments: (Bits) Value Ahg352174 jgi|Araly1|352174|fgenesh1_pg.C_scaffold_6002767 1170 0.0 > Ahg352174 jgi|Araly1|352174|fgenesh1_pg.C_scaffold_6002767 Length=888 Score = 1170 bits (633), Expect = 0.0 Identities = 809/894 (90%), Gaps = 12/894 (1%) Strand=Plus/Plus Query 1 ATGAAAACGGATACTACTCTACCCATAATCGCCGAAGACGGCGACTGTGGCGACAGCAAG 60 ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1 ATGAAAACGGATATTACTCTACCCATAATCGCCGAAGACGGCGACTGTGGCGAGAGCAAG 60 Query 61 AGGGTAAGAGTGGCTGATTCAGGA-TATACCGTCGGCGGTCAGGACAGACCTGTAAAAT- 118 ||||||||||||||||| | ||| || |||||||| ||| |||||||||||||||||| Sbjct 61 CGGGTAAGAGTGGCTGATCCGGGATTA-ACCGTCGGTGGTGAGGACAGACCTGTAAAATG 119 Query 119 TACCAAAAATCGAAAACAATGGAGATGTTGGGACATCAGAAGGAACACACGT-TTTAGTC 177 | |||||||| ||| |||| |||||||||||||||||||||||||||||| | ||| ||| Sbjct 120 T-CCAAAAATTGAAGACAACGGAGATGTTGGGACATCAGAAGGAACACACCTCTTT-GTC 177 Query 178 GATGCACTAATGGCCGAAGTGGCAATTAAAGATAAAGACGGAAAAACAAACGCCGGCCAC 237 |||| ||||||||| || ||||||||||| ||||||||||||||||||||||||||||| Sbjct 178 GATGAACTAATGGCTGACGTGGCAATTAACGATAAAGACGGAAAAACAAACGCCGGCCAT 237 Query 238 GGTGTAGTCTCAGTCATGGGACGACAGAGAGCTATGACAACCGCCGTTTCCACCGTCGTC 297 || ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| Sbjct 238 GGAGTAGTCTCAGTTATGGGACGGCAGAGAGCTATGACAACCGCCGTTTCCACCGTCGTT 297 Query 298 GACGAGATTCCGTCTTATGACATTTTCGGAATCTTCGACGGTCTTAGGCTCGCTAAATTC 357 || |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 298 GAGGAGATTCCATCTTATGACATTTTCGGAATCTTCCACGGTCTTAGGCTCGCTAAATTC 357 Query 358 TTTGAGGACAGGCTGCGTCGGCTCGTGAAAGAGGAGGTGAAAGCATGCCACGGCCGTGGG 417 || ||||||||||| ||||| ||||| || || ||||| |||||||||||| |||| ||| Sbjct 358 TTCGAGGACAGGCTTCGTCGCCTCGTTAAGGATGAGGTAAAAGCATGCCACAGCCGCGGG 417 Query 418 GTGGCTGCGGACTGGAATAAAGTTATGAAATCCTGTTTTTCCGAGGCGGTAGGGACGGTG 477 ||||| |||||||||||||||||||||||||| |||||||| ||||| || ||||| ||| Sbjct 418 GTGGCGGCGGACTGGAATAAAGTTATGAAATCGTGTTTTTCGGAGGCCGTGGGGACAGTG 477 Query 478 GGAACCACCACTTC---CGCGGTGGTTACGATAGTCGGAAAAGAGGAAGTGATTGTGTTG 534 || |||||| || | |||||||| || ||| ||||||||||||| ||| |||||||| Sbjct 478 GGGACCACCGCTACAAAAGCGGTGGTAACAATACTCGGAAAAGAGGAGGTGGTTGTGTTG 537 Query 535 TGCCGTGGCGGCGCAAGGGTGGTTTTATACTCTCACGACGGAGTTGCTTTGCCTCTCTGT 594 ||||||||||| |||||||||||| |||||||||||| |||| ||||||||||| | || Sbjct 538 TGCCGTGGCGGAGCAAGGGTGGTTATATACTCTCACGGCGGAATTGCTTTGCCTATGTGC 597 Query 595 CATATCCATCATCACAAGGATGGTGTAGAGCAAATTCTAAAGATCCATAAACGAAAAAAG 654 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 598 CATATCCATCATCACAAGGATGGTGTAGAGCAAATCCTAAAGATCCATAAACGAAAAAAG 657 Query 655 ATAGACGACTTTATTGTACTTGCATGCGATGGTCTATGGGACGTTGTCTCCGACGATGAC 714 ||||||||||| || |||||||||||||||||||||||||||||||||||||||| |||| Sbjct 658 ATAGACGACTTCATAGTACTTGCATGCGATGGTCTATGGGACGTTGTCTCCGACGGTGAC 717 Query 715 ACATATCAGCTTGTGAAACGTTGTCTTTACGGCAAATTACCACCAGACGGGTGTATAAGT 774 |||||||||||||| ||| |||||||||| |||||||||||| ||| | | ||| ||| Sbjct 718 ACATATCAGCTTGTCAAAAGTTGTCTTTATGGCAAATTACCA---GACAGATTTATCAGT 774 Query 775 GAATCAAGCTCGACAAAGGCTGCAGTGATATTGGCAGAGCTTGCAATTGCAAGAGGAAGC 834 ||||||||| |||||||||||||||||||| ||||||||||||| |||||||||||||| Sbjct 775 GAATCAAGCACGACAAAGGCTGCAGTGATACTGGCAGAGCTTGCTCTTGCAAGAGGAAGC 834 Query 835 AAAGAAAATATAAACGTTATTGTTATTGATCTCAAAAGCTCTACCGTTTCTTAG 888 ||||| ||||||||||| |||||||||||||||| ||| ||||||||||||||| Sbjct 835 AAAGAGAATATAAACGTCATTGTTATTGATCTCAGAAGGTCTACCGTTTCTTAG 888 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 34081887798 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5