BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G11040.1
Length=919
Score E
Sequences producing significant alignments: (Bits) Value
Ahg352174 jgi|Araly1|352174|fgenesh1_pg.C_scaffold_6002767 1170 0.0
> Ahg352174 jgi|Araly1|352174|fgenesh1_pg.C_scaffold_6002767
Length=888
Score = 1170 bits (633), Expect = 0.0
Identities = 809/894 (90%), Gaps = 12/894 (1%)
Strand=Plus/Plus
Query 1 ATGAAAACGGATACTACTCTACCCATAATCGCCGAAGACGGCGACTGTGGCGACAGCAAG 60
||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1 ATGAAAACGGATATTACTCTACCCATAATCGCCGAAGACGGCGACTGTGGCGAGAGCAAG 60
Query 61 AGGGTAAGAGTGGCTGATTCAGGA-TATACCGTCGGCGGTCAGGACAGACCTGTAAAAT- 118
||||||||||||||||| | ||| || |||||||| ||| ||||||||||||||||||
Sbjct 61 CGGGTAAGAGTGGCTGATCCGGGATTA-ACCGTCGGTGGTGAGGACAGACCTGTAAAATG 119
Query 119 TACCAAAAATCGAAAACAATGGAGATGTTGGGACATCAGAAGGAACACACGT-TTTAGTC 177
| |||||||| ||| |||| |||||||||||||||||||||||||||||| | ||| |||
Sbjct 120 T-CCAAAAATTGAAGACAACGGAGATGTTGGGACATCAGAAGGAACACACCTCTTT-GTC 177
Query 178 GATGCACTAATGGCCGAAGTGGCAATTAAAGATAAAGACGGAAAAACAAACGCCGGCCAC 237
|||| ||||||||| || ||||||||||| |||||||||||||||||||||||||||||
Sbjct 178 GATGAACTAATGGCTGACGTGGCAATTAACGATAAAGACGGAAAAACAAACGCCGGCCAT 237
Query 238 GGTGTAGTCTCAGTCATGGGACGACAGAGAGCTATGACAACCGCCGTTTCCACCGTCGTC 297
|| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 238 GGAGTAGTCTCAGTTATGGGACGGCAGAGAGCTATGACAACCGCCGTTTCCACCGTCGTT 297
Query 298 GACGAGATTCCGTCTTATGACATTTTCGGAATCTTCGACGGTCTTAGGCTCGCTAAATTC 357
|| |||||||| |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 298 GAGGAGATTCCATCTTATGACATTTTCGGAATCTTCCACGGTCTTAGGCTCGCTAAATTC 357
Query 358 TTTGAGGACAGGCTGCGTCGGCTCGTGAAAGAGGAGGTGAAAGCATGCCACGGCCGTGGG 417
|| ||||||||||| ||||| ||||| || || ||||| |||||||||||| |||| |||
Sbjct 358 TTCGAGGACAGGCTTCGTCGCCTCGTTAAGGATGAGGTAAAAGCATGCCACAGCCGCGGG 417
Query 418 GTGGCTGCGGACTGGAATAAAGTTATGAAATCCTGTTTTTCCGAGGCGGTAGGGACGGTG 477
||||| |||||||||||||||||||||||||| |||||||| ||||| || ||||| |||
Sbjct 418 GTGGCGGCGGACTGGAATAAAGTTATGAAATCGTGTTTTTCGGAGGCCGTGGGGACAGTG 477
Query 478 GGAACCACCACTTC---CGCGGTGGTTACGATAGTCGGAAAAGAGGAAGTGATTGTGTTG 534
|| |||||| || | |||||||| || ||| ||||||||||||| ||| ||||||||
Sbjct 478 GGGACCACCGCTACAAAAGCGGTGGTAACAATACTCGGAAAAGAGGAGGTGGTTGTGTTG 537
Query 535 TGCCGTGGCGGCGCAAGGGTGGTTTTATACTCTCACGACGGAGTTGCTTTGCCTCTCTGT 594
||||||||||| |||||||||||| |||||||||||| |||| ||||||||||| | ||
Sbjct 538 TGCCGTGGCGGAGCAAGGGTGGTTATATACTCTCACGGCGGAATTGCTTTGCCTATGTGC 597
Query 595 CATATCCATCATCACAAGGATGGTGTAGAGCAAATTCTAAAGATCCATAAACGAAAAAAG 654
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 598 CATATCCATCATCACAAGGATGGTGTAGAGCAAATCCTAAAGATCCATAAACGAAAAAAG 657
Query 655 ATAGACGACTTTATTGTACTTGCATGCGATGGTCTATGGGACGTTGTCTCCGACGATGAC 714
||||||||||| || |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 658 ATAGACGACTTCATAGTACTTGCATGCGATGGTCTATGGGACGTTGTCTCCGACGGTGAC 717
Query 715 ACATATCAGCTTGTGAAACGTTGTCTTTACGGCAAATTACCACCAGACGGGTGTATAAGT 774
|||||||||||||| ||| |||||||||| |||||||||||| ||| | | ||| |||
Sbjct 718 ACATATCAGCTTGTCAAAAGTTGTCTTTATGGCAAATTACCA---GACAGATTTATCAGT 774
Query 775 GAATCAAGCTCGACAAAGGCTGCAGTGATATTGGCAGAGCTTGCAATTGCAAGAGGAAGC 834
||||||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 775 GAATCAAGCACGACAAAGGCTGCAGTGATACTGGCAGAGCTTGCTCTTGCAAGAGGAAGC 834
Query 835 AAAGAAAATATAAACGTTATTGTTATTGATCTCAAAAGCTCTACCGTTTCTTAG 888
||||| ||||||||||| |||||||||||||||| ||| |||||||||||||||
Sbjct 835 AAAGAGAATATAAACGTCATTGTTATTGATCTCAGAAGGTCTACCGTTTCTTAG 888
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34081887798
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5