BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G11050.1
Length=1912
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489943 jgi|Araly1|489943|fgenesh2_kg.6__3077__AT4G11050.1 2922 0.0
> Ahg489943 jgi|Araly1|489943|fgenesh2_kg.6__3077__AT4G11050.1
Length=1884
Score = 2922 bits (1582), Expect = 0.0
Identities = 1788/1888 (95%), Gaps = 11/1888 (1%)
Strand=Plus/Plus
Query 1 ATGGGTTCTA-GAACCACCATTTCGATTCTTGTTGTTCTTCTTCTAGGGTTGGTTCAACT 59
|||||||||| | ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1 ATGGGTTCTACG-ACCACCATTTCGATTCTTGTTCTTCTTCTTCTAGGGTTGGTTCAACT 59
Query 60 TGCAATTTCAGGGCATGACTATAAACAAGCTCTAAGCAAAAGCATTCTCTTCTTTGAAGC 119
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 TGCAGTTTCAGGGCATGACTATAAACAAGCTCTAAGCAAAAGCATTCTCTTCTTTGAAGC 119
Query 120 TCAGAGATCAGGACACCTCCCTCCTAACCAAAGAGTTTCATGGCGATCTCATTCCGGTCT 179
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 120 TCAGAGATCAGGACACCTCCCTCCTAACCAGAGAGTTTCATGGCGATCTCATTCCGGTCT 179
Query 180 TTACGATGGCAAATCAAGCGGCGTGGATCTAGTGGGAGGATATTATGACGCCGGAGACAA 239
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 180 TTACGATGGCAAATCAAGTGGCGTGGATCTAGTGGGAGGATATTATGACGCCGGAGACAA 239
Query 240 TGTGAAATTCGGGCTTCCGATGGCTTTCACGGTGACAACAATGTGTTGGAGCATCATAGA 299
||||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||
Sbjct 240 TGTGAAATTCGGGCTCCCAATGGCTTTCACGGTGACAACAATGTGTTGGAGCATCATCGA 299
Query 300 ATACGGTGGCCAGCTGGAATCCAACGGCGAACTTGGCCATGCCATTGACGCCGTTAAGTG 359
|||||||||||||||| |||| |||||||||||||| |||||||||||||||||||||||
Sbjct 300 ATACGGTGGCCAGCTGAAATCTAACGGCGAACTTGGTCATGCCATTGACGCCGTTAAGTG 359
Query 360 GGGAACTGATTATTTCATTAAAGCCCACCCTGAACCTAACGTTCTCTATGGAGAGGTAGG 419
|||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| ||
Sbjct 360 GGGAACTGATTATTTCATTAAAACCCACCCTGAACCTAACGTCCTCTATGGAGAGGTGGG 419
Query 420 AGATGGTAAGTCGGACCATTATTGTTGGCAAAGGCCAGAGGAAATGACTACTGATCGTAG 479
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 420 AGATGGTAAGTCGGACCATTATTGTTGGCAAAGGCCAGAGGAAATGACCACTGATCGTAA 479
Query 480 GGCTTACAAAATTGACCGGAACAATCCCGGTTCGGATCTCGCCGGAGAAACCGCTGCCGC 539
||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||
Sbjct 480 GGCTTACAAAATTGACCGGAACAATCCCGGTTCAGATTTAGCCGGAGAAACCGCTGCCGC 539
Query 540 AATGGCTGCCGCTTCCATCGTTTTCCGTCGCTCTGATCCATCATACTCTGCTGAGCTACT 599
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 540 AATGGCTGCGGCTTCCATCGTTTTCCGCCGCTCTGATCCATCATACTCTGCTGAGCTACT 599
Query 600 CCGTCACGCACATCAGCTATTTGAATTTGCGGACAAATACAGAGGCAAATATGACAGCAG 659
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 600 CCGTCACGCCCATCAGCTATTTGAATTTGCGGACAAATACAGAGGCAAATATGACAGTAG 659
Query 660 CATTACCGTGGCACAAAAATATTACCGATCCGTCAGCGGTTACAATGATGAGTTACTATG 719
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 660 CATTACCGTGGCACAAAAATACTACCGATCCGTCAGCGGTTACAATGATGAATTACTATG 719
Query 720 GGCTGCTGCGTGGTTATACCAAGCAACAAATGATAAATACTATCTAGATTACCTCGGCAA 779
||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 720 GGCTGCTGCATGGTTATACCAAGCAACCAATGATAAATATTATCTAGATTACCTCGGCAA 779
Query 780 GAATGGCGACTCAATGGGTGGTACGGGCTGGTCGATGACCGAATTTGGTTGGGACGTTAA 839
|||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 780 GAATGGTGACTCAATGGGCGGTACGGGCTGGTCGATGACTGAATTTGGTTGGGACGTTAA 839
Query 840 GTATGCTGGTGTTCAAACCCTTGTGGCCAAGGTTTTGATGCAAGGAAAAGGTGGAGAACA 899
||||||||| |||||||||||||| || ||||||||||||||||| ||||||||||||||
Sbjct 840 GTATGCTGGCGTTCAAACCCTTGTCGCTAAGGTTTTGATGCAAGGGAAAGGTGGAGAACA 899
Query 900 TACTGCTGTGTTCGAGAGGTACCAACAGAAAGCAGAACAGTTTATGTGTTCGTTGTTAGG 959
||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 CACTGCCGTGTTCGAGCGGTACCAACAGAAAGCAGAACAGTTTATGTGTTCGTTGTTAGG 959
Query 960 TAAAAGTACAAAGAACATTAAGAAAACTCCAGGGGGTTTGATTTTCCGACAAAGCTGGAA 1019
|||||| || |||||||||||||||||||| || ||| | ||||||||||||||||||||
Sbjct 960 TAAAAGCACGAAGAACATTAAGAAAACTCCCGGCGGTCTAATTTTCCGACAAAGCTGGAA 1019
Query 1020 TAATATGCAGTTTGTCACGAGTGCTTCATTCTTAGCCACTGTTTACTCCGACTATCTCTC 1079
||||||||||||||||||||||| || ||||||||| | ||||||||||||||||||||
Sbjct 1020 CAATATGCAGTTTGTCACGAGTGCCTCTTTCTTAGCCGCCGTTTACTCCGACTATCTCTC 1079
Query 1080 GTAC-TCCAAAAGAGATCTTCTTTGTTCTCAAGGAAACATTTCTCCATCCCAACTCCTAG 1138
| | |||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 1080 -TTCATCCAAAAGAGATCTCCGTTGTTCTCAAGGAAACATTTCTCCATCCCAACTCCTAG 1138
Query 1139 AATTT-TCTAAATCACAGGTGGATTACATTCTTGGAGACAACCCTAGAGCAACAAGTTAC 1197
|||| || ||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 1139 -ATTTCTCAAAATCACAGGTGGATTACATTCTCGGAGACAACCCTAGAGCGACAAGTTAC 1197
Query 1198 ATGGTCGGATACGGAGAGAACTATCCACGACAAGTTCATCATCGTGGTTCGTCTATTGTC 1257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 ATGGTCGGATACGGAGAGAACTATCCACGACAAGTTCATCATCGTGGTTCGTCTATTGTC 1257
Query 1258 TCCTTCAATGTCGATCAAAAGTTCGTTACTTGCCGTGGTGGTTACGCCACATGGTTTAGC 1317
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 1258 TCCTTCAATGTCGATCAAAAGTTCGTGACTTGCCGTGGCGGTTACGCCACATGGTTTAGC 1317
Query 1318 CGGAAAGGAAGCGATCCAAATGTTTTAACCGGAGCTCTAGTGGGTGGACCCGACGCCTAC 1377
|| |||||||||||||| |||||||||||||||||| ||||||||||||||||||| |||
Sbjct 1318 CGCAAAGGAAGCGATCCGAATGTTTTAACCGGAGCTATAGTGGGTGGACCCGACGCATAC 1377
Query 1378 GATAACTTCGCTGACCAACGGGACAATTATGAGCAAACCGAACCAGCAACTTACAACAAC 1437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1378 GATAACTTCGCTGACCAACGGGACAATTATGAGCAAACCGAACCAGCAACTTACAACAAC 1437
Query 1438 GCGCCTCTTCTTGGTGTATTAGCCCGGTTAATTTCCGGTTCGACCGGTTTTGACCAGCTG 1497
||||| |||||||||||| |||||||||| ||||||||| ||||||||||||||||||||
Sbjct 1438 GCGCCACTTCTTGGTGTACTAGCCCGGTTGATTTCCGGTCCGACCGGTTTTGACCAGCTG 1497
Query 1498 CTTCCCGGTGTTAGTCCGACTCCAAGTCCGGTTATCATAAAACCAGCACCGGTACCACA- 1556
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 1498 CTTCCCGGTGTTAGTCCGACTCCAAGTCCGGTTATCATAAAACTAGCACCGGTACCAAAG 1557
Query 1557 AAGGAAACCGACAAAACCTCCTGCAGCTTCTTCTCCTAGTCCCATTACCATATCGCAGAA 1616
||| ||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1558 AAG-AAACCCACAACACCTCCTGTAGCTTCTTCTCCTAGTCCCATTACCATATCGCAGAA 1616
Query 1617 GATGACAAACTCATGGAAGAACGAGGGAAAAGTGTACTATCGATACTCTACGATATTAAC 1676
||||||| ||||||||||||||||||||| ||||||||||||||||| || | ||||||
Sbjct 1617 GATGACACTCTCATGGAAGAACGAGGGAAAGGTGTACTATCGATACTCAACAAGATTAAC 1676
Query 1677 CAATAGATCTACGAAAACATTGAAAATTTTGAAGATATCAATCACCAAGCTATACGGTCC 1736
|||||||||||| |||||||| ||||||||||||||||||||||||||||| || |||||
Sbjct 1677 CAATAGATCTACAAAAACATTAAAAATTTTGAAGATATCAATCACCAAGCTCTATGGTCC 1736
Query 1737 AATATGGGGTGTGACGAAAACCGGAAATTCATTCAGTTTTCCATCATGGATGCAATCTTT 1796
||||||||||||||||||||||||| |||||||| ||||| |||||||||||||| ||
Sbjct 1737 TATATGGGGTGTGACGAAAACCGGAACTTCATTCACCTTTCCCTCATGGATGCAATCGTT 1796
Query 1797 ACCATCAGGCAAAAGCATGGAATTTGTCTATATCCACTCAGC---TTCTCCGGCAGATGT 1853
||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1797 ACCGGCAGGCAAAAGCATGGAATTTGTCTATATCCACTCAGCAGCTTCTCCGGCAGATGT 1856
Query 1854 CTTGGTTTCTAACTATTCTTTGGAATGA 1881
|||||| ||||||||||||||||| |||
Sbjct 1857 CTTGGTCTCTAACTATTCTTTGGAGTGA 1884
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71838202070
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5