BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G11060.1
Length=1004
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489944 jgi|Araly1|489944|fgenesh2_kg.6__3078__AT4G11060.1 1406 0.0
> Ahg489944 jgi|Araly1|489944|fgenesh2_kg.6__3078__AT4G11060.1
Length=983
Score = 1406 bits (761), Expect = 0.0
Identities = 886/945 (94%), Gaps = 13/945 (1%)
Strand=Plus/Plus
Query 1 GTTCACATCGTTTTCGTTTTGTCCCCAAAACCCTAAAAATCTTCAACGCAGGGTTTAACG 60
|||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct 1 GTTCACATCGTTTTCGTTTTGTCCCC-AAACCCTAAAAAGCTTCAACGCAGGGTTTAACG 59
Query 61 AATCAAACCTCAACGACGTCGTTTTACTCTTCTTCTTCTTCCTCTCTGTGTTGCGTTCCC 120
||||||| ||| |||||||| ||| ||||||||||||||||||||||||| |||||||
Sbjct 60 AATCAAAGCTCTTCGACGTCG-TTT--TCTTCTTCTTCTTCCTCTCTGTGTTTCGTTCCC 116
Query 121 TCTTTCAC-AAACTCACTGACATCACATCCTTAGAGTCGTCCCAGAATGAACTCACTCGC 179
|||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 117 TCTTTCACAAAACTCACTGACATCACATCCTCAGAATCGTCCCAGAATGAACTCACTCGC 176
Query 180 CATTAGAGTCTCCAAGGTTCTCAGATCCTCTTCAATATCTCCTTTAGCAATAAGTGCTGA 239
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 177 CATTAGAGTCTCCAAGGTTCTCAGATCTTCTTCGATATCTCCTTTAGCAATAAGTGCTGA 236
Query 240 GAGAGGCTCTAAGTCGTGGTTCTCTACTGGTCCTATCGATGAAGGTGTAGAAGAAGATTT 299
|||||||||||||||||||||||| |||||||| || |||||||||||||||||||| ||
Sbjct 237 GAGAGGCTCTAAGTCGTGGTTCTCGACTGGTCCGATTGATGAAGGTGTAGAAGAAGAGTT 296
Query 300 TGAAGAAAAT-GTTACAGAAAGGCCTGAGCTTCAACCTCATGGAGTTGATCCTCGTAAAG 358
||||| |||| ||| | || || |||||||||||||||||||||||||||||||||||||
Sbjct 297 TGAAG-AAATCGTTTCGGAGAGACCTGAGCTTCAACCTCATGGAGTTGATCCTCGTAAAG 355
Query 359 GTTGGGGATTTCGCGGTGTTCATAGGGCGATTATTTGTGGGAAAGTAGGGCAAGCACCGT 418
||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |
Sbjct 356 GTTGGGGATTTCGCGGTGTCCATAGGGCGATAATTTGTGGGAAAGTAGGGCAAGCACCAT 415
Query 419 TACAGAAGATCTTAAGGAACGGGCGGACAGTAACGATCTTTACAGTAGGAACAGGTGGGA 478
|||||||||| |||||||||||||| ||||||||||| ||||||||||||||||| || |
Sbjct 416 TACAGAAGATTTTAAGGAACGGGCGAACAGTAACGATATTTACAGTAGGAACAGGCGGCA 475
Query 479 TGTTTGATCAGAGGCTTGTAGGAGCTACTAATCAGCCAAAACCAGCTCAGTGGCATAGAA 538
||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||
Sbjct 476 TGTTTGATCAGAGGCTTGTTGGAGCAACCAATCAGCCAAAACCAGCTCAGTGGCATAGAA 535
Query 539 TCGCTGTGCACAACGAAGTGCTTGGCTCTTACGCTGTCCAAAAACTCGCTAAAAACTCGT 598
| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 536 TTGCAGTGCATAACGAAGTGCTTGGCTCTTACGCTGTCCAAAAACTCGCTAAAAACTCAT 595
Query 599 CGGTTTATGTGGAAGGTGATATTGAGACTAGAGTGTATAATGATAGCATCAGCAGTGAAG 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 596 CGGTTTATGTGGAAGGTGATATTGAGACTAGAGTGTATAATGATAGCATCAGCAGTGAAG 655
Query 659 TGAAGAGTATCCCTGAGATTTGCGTTCGTCGTGATGGTAAGATTCGGATGATCAAATATG 718
||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 656 TGAAGAGTATCCCTGAGATTTGCGTTCGTCGTGATGGGAAGATTCGGCTGATCAAATATG 715
Query 719 GTGAAAGCATTAGCAAAATCTCTTTTGATGAGCTAAAAGAAGGATTGATTTAGTCGGAGC 778
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 716 GTGAAAGCATTAGCAAAATCTCTTTCGATGAGCTAAAAGAAGGATTGATTTAGTCGGAGC 775
Query 779 AAGAATATTCC-GGTGACCGGATGAGAGCAAACTGAATAAAACGTTTTTCTGAGTAAAAT 837
||||||||||| |||| ||||| ||||||||||||||| || |||||||||||||||||
Sbjct 776 AAGAATATTCCCGGTGGCCGGAGGAGAGCAAACTGAATCAAT-GTTTTTCTGAGTAAAAT 834
Query 838 CGATAAAACAGTTTGGTTTTTTGTTCTGTCCATTGCGACTTTGTGAGCACTGAGTTCCTT 897
| ||||||||||||| |||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 835 CAATAAAACAGTTTGTTTTTTTGTTCTGTCCATTGCGACTTTGTAAGCATTGAGTTCCTT 894
Query 898 TTAATGGATACCAGGGGGCATATTTATGTAGTTTCTGGTCAGAAT 942
|| ||||||| | |||||||| | |||||||||||||||| |||
Sbjct 895 TTTATGGATATC-GGGGGCAT-T--ATGTAGTTTCTGGTCAAAAT 935
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37322335743
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5