BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G11070.1
Length=973
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489946 jgi|Araly1|489946|fgenesh2_kg.6__3080__AT4G11070.1 1175 0.0
Ahg492487 jgi|Araly1|492487|fgenesh2_kg.7__1920__AT4G23810.1 342 2e-93
> Ahg489946 jgi|Araly1|489946|fgenesh2_kg.6__3080__AT4G11070.1
Length=968
Score = 1175 bits (636), Expect = 0.0
Identities = 879/990 (89%), Gaps = 41/990 (4%)
Strand=Plus/Plus
Query 1 ATGGAAATGATGAATTGGGAGCGGAGGAGTTTGCTAAACGAGCTAATTCATGGACTAAAA 60
|||||||||||||||||||||| ||| | ||||||||||||||| |||||||||||||||
Sbjct 1 ATGGAAATGATGAATTGGGAGCAGAGAAATTTGCTAAACGAGCTGATTCATGGACTAAAA 60
Query 61 GCGGCCAAGCAGCTTCAGGGTTCGTCTTCTCCATCGTTGTCAGCTTCTTCTTCATATTTG 120
||||| ||||||||||||| |||| |||| || | | | | | || |||||| ||||
Sbjct 61 GCGGCAAAGCAGCTTCAGGCTTCGCCTTCGCC-T--TCG-C--CATCAACTTCATCTTTG 114
Query 121 ACGACGGAGATAAAGGAGAATCTCTTACATAACATAGTTTCTTCCTTCAAAAAAGCTATT 180
|||| |||||| ||||||| |||||||||||||||||||||||||||| | |||||||||
Sbjct 115 ACGATGGAGATGAAGGAGACTCTCTTACATAACATAGTTTCTTCCTTCGAGAAAGCTATT 174
Query 181 TTGATGCTCAACGGATCCACCACACAACACAATCCAACGATAGAGCTTGCGCCT-GATCC 239
|||||||| |||||||||||||||||||||| |||||||| ||||||||| || ||||
Sbjct 175 TTGATGCTAAACGGATCCACCACACAACACATTCCAACGACGGAGCTTGCG-CTGGATCT 233
Query 240 CCTAGCTCATCCCGGAAAGGTTCCAGGATCTCCAGCATCGATCACCGGAAATCCGAGAAG 299
||||||| ||||||| |||||||||| ||||||| ||||||||||||||| |||||||||
Sbjct 234 CCTAGCTAATCCCGGTAAGGTTCCAGAATCTCCAACATCGATCACCGGAAGTCCGAGAAG 293
Query 300 CGAAGAGTTTTTCAATGTAAGATCGAAAGAATT-CAACTTAAGTTCTAAAAAGAGGAAGA 358
||||||||||||| |||| ||||||||| ||| ||||||||||||||||||||||||||
Sbjct 294 CGAAGAGTTTTTCGATGTGGGATCGAAAG-ATTGCAACTTAAGTTCTAAAAAGAGGAAGA 352
Query 359 TGTTGCCAAAGTGGACAGAGCAAGTGAGAATTAGCCCAGAGAGAGGCTTAGAAGGACCTC 418
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 353 TGTTGCCAAAGTGGACAGAGCAAGTAAGAATTAGTCCAGAGAGAGGCTTAGAAGGACCTC 412
Query 419 ATGACGATATCTTCAGCTGGAGAAAATATGGCCAGAAAGACATTTTGGGCGCCAAAT-TC 477
|||| ||| ||||||||||||||||||||||||| ||||||||||| |||||||||| ||
Sbjct 413 ATGATGATGTCTTCAGCTGGAGAAAATATGGCCAAAAAGACATTTTAGGCGCCAAATATC 472
Query 478 CCAAGGAGTTATTACAGATGCACATTTCGTAACACACAGTACTGTTGGGCTACGAAACAA 537
| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 473 C-AAGGAGTTATTACAGATGCACATTTCGTAACACACAGTACTGTTGGGCTACAAAACAA 531
Query 538 GTCCAAAGATCGGACGGTGATCCAACGATCTTCGAAGTAACATACAGAGGAACACACACT 597
||||||||||||||| ||||||| |||||||||||||||||||||||||||| |||||||
Sbjct 532 GTCCAAAGATCGGACAGTGATCCTACGATCTTCGAAGTAACATACAGAGGAATACACACT 591
Query 598 TGTTCACAGGGGATCCCACTTCCAGAGAA-ACGAGAAACCAAACCAAAACACACAGTAGC 656
||||||||||||||||||| |||| | || || |||||| |||||||| || ||||||||
Sbjct 592 TGTTCACAGGGGATCCCACCTCCAAA-AATACAAGAAACTAAACCAAACCATACAGTAGC 650
Query 657 AGTAAATTACCA-------G---A-A-TCTCAGGGCCAGTCTTACCGTACGTACCGGCGG 704
||||||||||| | | | ||||||| ||| ||| |||||||||||| |||
Sbjct 651 TGTAAATTACCAAAATAACGTCGACAATCTCAGGACCAATCTCACCGTACGTACCAACGG 710
Query 705 ACTTGGAAGC-GA-AGCTTTCTCATTCCCCGTCACGTCGCCGTTATACACTTACGAGTCC 762
||||| |||| || | ||||||||||||| || ||||||||||| |||||||||||||||
Sbjct 711 ACTTG-AAGCCGACA-CTTTCTCATTCCCTGTTACGTCGCCGTTTTACACTTACGAGTCC 768
Query 763 ATCAACGGTGGTGGAACGTTTTACCACCACGTGGGAAGTTCTGGTCCGTCGGATTTCACT 822
||||||||||| |||||| | |||| |||||||| |||| |||||| ||||||||
Sbjct 769 ATCAACGGTGG---AACGTTATGCCAC---GTGGGAAGCTCTGCTCCGTCAGATTTCACA 822
Query 823 GGATTGATCTCAACAAATACTTCCACAGGAAGTTCTCCAATCTTCGACGTTAATTTTCAA 882
||||||||||| || ||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 823 GGATTGATCTCTACTAATACCTCCACAGGAAGTTCTCCAATCTTCGACGTTGATTTTCA- 881
Query 883 TTT-GATCCAACGGCTGAGATTAACACAGGCTTCCCCACTTTTTTCCACAATTCGATTTA 941
||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 882 TTTCGATCCAACGGCTGAGATTAACACAGGCTTCCCCACCTTTTTACACAATTCGATTTA 941
Query 942 AGTAGTACAGTATTGAATATTCTTGAGATT 971
| || | |||| |||||||||||||||||
Sbjct 942 ACTA--A-AGTACTGAATATTCTTGAGATT 968
> Ahg492487 jgi|Araly1|492487|fgenesh2_kg.7__1920__AT4G23810.1
Length=1447
Score = 342 bits (185), Expect = 2e-93
Identities = 246/276 (89%), Gaps = 2/276 (1%)
Strand=Plus/Plus
Query 342 TTCTAAA-AAGAGGAAGATGTTGCCAAAGTGGACAGAGCAAGTGAGAATTAGCCCAGAGA 400
||| ||| || ||||||||||| ||||| ||| |||| |||||||||||||||||||||
Sbjct 627 TTC-AAAGAAAAGGAAGATGTTACCAAAATGGTCAGAAAAAGTGAGAATTAGCCCAGAGA 685
Query 401 GAGGCTTAGAAGGACCTCATGACGATATCTTCAGCTGGAGAAAATATGGCCAGAAAGACA 460
||||||||||||||||||| || ||| |||| ||||||||||||||||| || |||||||
Sbjct 686 GAGGCTTAGAAGGACCTCAAGATGATGTCTTTAGCTGGAGAAAATATGGTCAAAAAGACA 745
Query 461 TTTTGGGCGCCAAATTCCCAAGGAGTTATTACAGATGCACATTTCGTAACACACAGTACT 520
|||| |||||||||||||||||||||||||||||||||||| ||||| |||||| |||
Sbjct 746 TTTTAGGCGCCAAATTCCCAAGGAGTTATTACAGATGCACACATCGTAGCACACAAAACT 805
Query 521 GTTGGGCTACGAAACAAGTCCAAAGATCGGACGGTGATCCAACGATCTTCGAAGTAACAT 580
||||||| |||||||||||||| ||||||||||||||| ||||| | |||||||| || |
Sbjct 806 GTTGGGCAACGAAACAAGTCCAGAGATCGGACGGTGATGCAACGGTGTTCGAAGTTACGT 865
Query 581 ACAGAGGAACACACACTTGTTCACAGGGGATCCCAC 616
|||||||||||||||||||||| |||| |||| |||
Sbjct 866 ACAGAGGAACACACACTTGTTCGCAGGCGATCACAC 901
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36140525316
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5