BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G11080.1
Length=1372
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489947 jgi|Araly1|489947|fgenesh2_kg.6__3081__AT4G11080.1 1808 0.0
Ahg942974 jgi|Araly1|942974|scaffold_603518.1 669 0.0
> Ahg489947 jgi|Araly1|489947|fgenesh2_kg.6__3081__AT4G11080.1
Length=1363
Score = 1808 bits (979), Expect = 0.0
Identities = 1258/1385 (91%), Gaps = 50/1385 (4%)
Strand=Plus/Plus
Query 1 ATGTCGACAGTTTCTTCAGATCCTGCTCATGCGAAGAAATCGAGAAACAGTAGAAAAGCG 60
||| |||||||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1 ATGGCGACAGTTTCCTCAGATCCTGCTCCGGCGAAGAAATCGAGAAACAGTAGAAAAGCG 60
Query 61 TTAAAGCAAAAGAATGAGATCGTC--GAGTCATCACC---G--G-------TCTCAGA-C 105
|| ||| ||||||||||||||||| ||||||||||| | | ||||| | |
Sbjct 61 TTGAAGGAAAAGAATGAGATCGTCGAGAGTCATCACCATTGTTGTCACCAATCTCA-ACC 119
Query 106 AAGGGGAAAGAAACGAAGT-C---GTTTGAGAAAGATCTGATGGAGATGCAAGCGATGTT 161
||||||||||||||||| | | ||| ||| |||| ||| |||| ||| |
Sbjct 120 AAGGGGAAAGAAACGAAATCCAATGTTGGAG-AAGA--TGA---AGAT-----CGA-GAA 167
Query 162 GGAGAAGA-TGAAGA-TCG-AGAAGGAGAA-AACTGAGGATTTGTTGAAGGAGAAGGACG 217
||| || | ||| || | | ||||||||| || || || | ||||| ||||||| |
Sbjct 168 GGATAAAACTGAGGATTTGCTGAAGGAGAAGGAC-GA-GA--TCCTGAAGAAGAAGGAAG 223
Query 218 -AGATCTTGAGGAAGAAGGAAGTTGAACAGGAAAAACTTAAGACGGAGCTGAAGAAACTG 276
||| || || || |||||| || |||||||| ||||||||||||||| |||| ||||||
Sbjct 224 AAGAACTCGA-GACGAAGGACGTGGAACAGGAGAAACTTAAGACGGAGTTGAAAAAACTG 282
Query 277 CAGAAGATGAAGGAATTCAAGCCTAACATGACTTTTGCTTTTAGTCAATCTTTGGCACAA 336
||||||||||| ||||||||||||||||||| |||||| |||| ||||||||||||||||
Sbjct 283 CAGAAGATGAAAGAATTCAAGCCTAACATGAGTTTTGCGTTTACTCAATCTTTGGCACAA 342
Query 337 ACTgaagaagaaaagaagggaaagaagaagaagaagGATTGTGCTGAAACAAAGAGACCA 396
||||||||||| |||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 343 ACTGAAGAAGATAAGAAGGGGAAGAAGAAGAAGAAGGATTGTGTTGAAACAAAGAGACCA 402
Query 397 TCAACACCATATATTTTGTGGTGTAAGGATAATTGGAACGAAGTGAAGAAACAGAATCCT 456
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 403 TCAACACCATATATTTTGTGGTGTAAGGATAATTGGAACGAAGTGAAGAAGCAGAATCCT 462
Query 457 GAAGCTGATTTCAAGGAGACTTCGAACATTCTGGGTGCTAAGTGGAAGGGGAT-T-AGTG 514
|||||||||||||||||||||||||| ||||| ||||||||||||| || | | ||||
Sbjct 463 GAAGCTGATTTCAAGGAGACTTCGAATATTCTTGGTGCTAAGTGGA-GGAC-TCTGAGTG 520
Query 515 CT-GAAGAGAAGAAGCCTTATGAGGAGAAGTATCAGGCGGATAAGGAAGCTTATCTTCAG 573
| |||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 521 -TAGAAGAGAAGAAGTTTTATGAGGAGAAGTATCAGGTTGATAAGGAAGCTTATCTTCAG 579
Query 574 GTTATTACAAAGGAGAAGCGTGAGAGGGAAGCAATGAAGCTTCTTGATGATGAGCAGAAG 633
|||||||||||||||||||| || |||||||| |||||||||||||||||||| ||||||
Sbjct 580 GTTATTACAAAGGAGAAGCGCGAAAGGGAAGCTATGAAGCTTCTTGATGATGAACAGAAG 639
Query 634 CAGAAAACTGCAATGGAATTGCTTGATCAGTATCTTCACTTTGTTCAGGAAGCTGAACAT 693
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 640 CAGAAAACTGCTATGGAATTGCTTGATCAGTATCTTCACTTTGTTCAGGAAGCTGAACAA 699
Query 694 GACAACAAGAAAAAGGCCAAGAAGATAAAGGATCCCCTGAAGCCTAAACAACCAATATCT 753
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 700 GACAACAAGAAAAAGGCCAAGAAGATAAAGGATCCCCTGAAGCCTAAACATCCAATATCT 759
Query 754 GCTTACCTGATCTATGCAAACGAGAGGAGAGCTGCTTTAAAAGGAGAAAACAAAAGCGTT 813
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 760 GCTTACCTGATCTATGCAAACGAGAGGAGAGCTGCTTTAAAAGGAGAAAACAAAAGCGTT 819
Query 814 ATTGAGGTCGCTAAGATGGCTGGAGAAGAGTGGAAGAACTTGTCGGAAGaaaaaaaGGCT 873
||||||||||| |||||| ||||||||||||||||||| || ||||||||| ||||||||
Sbjct 820 ATTGAGGTCGCAAAGATGACTGGAGAAGAGTGGAAGAATTTATCGGAAGAACAAAAGGCT 879
Query 874 CCTTATGATCAGATGGCGAAA-AAGAACAAGGAGATATATCTGCaagaaatggaaggata 932
||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 880 CCTTATGATCAGATGGC-AAAGAAGAACAAGGAGATATACCTGCAAGAAATGGAAGGATA 938
Query 933 taaaagaacaaaggaagaagaagcaatgagccagaagaaagaagaagaagaaTTCATGAA 992
||||| |||||||||||||||| | ||||||||||||||||||||||||||| |||||||
Sbjct 939 TAAAATAACAAAGGAAGAAGAAACCATGAGCCAGAAGAAAGAAGAAGAAGAACTCATGAA 998
Query 993 ACTCCATAAACAAGAAGCTCTCCAACTTCTCAAGAAGAAGGAGAAAACCGACAATATCAT 1052
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 999 ACTCCATAAACAAGAAGCTCTTCAACTTCTCAAGAAGAAGGAAAAAACCGACAATATCAT 1058
Query 1053 AAAGAAGACGAAAGAGACGGCGAAGAACAAGAAAAAGAACGAGAATGTTGATCCTAACAA 1112
||||||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||
Sbjct 1059 AAAGAAGACGAAAGAGACGACCAAGAACAAGAAGAAGAACGAGAATGTTGATCCTAACAA 1118
Query 1113 ACCCAAAAAGCCTACTTCTTCATACTTTCTCTTCTGCAAAGACGCAAGAAAGAGTGTGTT 1172
||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1119 ACCCAAAAAGCCTGCTTCTTCATACTTTCTCTTCTGCAAAGAAGCAAGAAAGAGTGTGTT 1178
Query 1173 AGAAGAACATCCTGGGATCAACAACTCAACTGTTACTGCTCACATTTCATTGAAATGGAT 1232
|||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 1179 AGAAGAACATCCTGGGATCAACAACTCAACTGTTACCGCCCACATTTCATTGAAATGGAA 1238
Query 1233 GGAACTTGGTGAAGAGGAGAAACAAGTTTACAATAGCAAAGCTGCTGAGTTAATGGAAGC 1292
||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1239 GGAACTTGGTGAAGAAGAGAAACAAGTTTACAATGGCAAAGCTGCTGAGTTAATGGAAGC 1298
Query 1293 TTACAAGAAAGAAGTGGAAGAGTACAATAAGACCAAGACTTCGTCGTAGAGAAAGAAAAA 1352
||| |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1299 TTATAAGAGAGAAGTGGAAGAGTACAATAAGACCAAGACGTCGTCGTAGAGAAAGAAAAA 1358
Query 1353 TTAGA 1357
| |||
Sbjct 1359 TGAGA 1363
> Ahg942974 jgi|Araly1|942974|scaffold_603518.1
Length=505
Score = 669 bits (362), Expect = 0.0
Identities = 419/447 (94%), Gaps = 2/447 (0%)
Strand=Plus/Plus
Query 440 TGAAGAAACAGAATCCTGAAGCTGATTTCAAGGAGACTTCGAACATTCTGGGTGCTAAGT 499
||||||| | ||||||||||||||||||||||||||||||||| ||| | ||||||||||
Sbjct 34 TGAAGAAGCCGAATCCTGAAGCTGATTTCAAGGAGACTTCGAATATTTTTGGTGCTAAGT 93
Query 500 GGAAGGGGATTAGTGCT-GAAGAGAAGAAGCCTTATGAGGAGAAGTATCAGGCGGATAAG 558
|||| |||||||||| | |||||||| |||||||||||||||||||||||||||||||||
Sbjct 94 GGAAAGGGATTAGTG-TAGAAGAGAATAAGCCTTATGAGGAGAAGTATCAGGCGGATAAG 152
Query 559 GAAGCTTATCTTCAGGTTATTACAAAGGAGAAGCGTGAGAGGGAAGCAATGAAGCTTCTT 618
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 153 GAAGCTTATCTTCAGGTTATTACAAAGGAGAAGCGAGAGAGGGAAGCCATGAAGCTTCTT 212
Query 619 GATGATGAGCAGAAGCAGAAAACTGCAATGGAATTGCTTGATCAGTATCTTCACTTTGTT 678
|||||| ||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 213 GATGATCAGCAGAAGCAGAAAACTGCTATGGAATTGCTTGATCAGTATCTTCAGTTTGTT 272
Query 679 CAGGAAGCTGAACATGACAACAAGAAAAAGGCCAAGAAGATAAAGGATCCCCTGAAGCCT 738
|| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 273 CAAGAAGCTGAACAAGACAACAAGAAAAAGGCCAAGAAGATAAAGGATCCGTTGAAGCCT 332
Query 739 AAACAACCAATATCTGCTTACCTGATCTATGCAAACGAGAGGAGAGCTGCTTTAAAAGGA 798
||||| |||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 333 AAACATCCAATATCTGCTTACCTGATCTATGCTAACGAGGGGAGAGCTGCTTTAAAAGGA 392
Query 799 GAAAACAAAAGCGTTATTGAGGTCGCTAAGATGGCTGGAGAAGAGTGGAAGAACTTGTCG 858
|||||||||||||||||||| ||||||||||| | ||||||||||||||||| || |||
Sbjct 393 GAAAACAAAAGCGTTATTGAAGTCGCTAAGATAACCGGAGAAGAGTGGAAGAATTTATCG 452
Query 859 GAAGaaaaaaaGGCTCCTTATGATCAG 885
|||||| ||||||||||||||||||||
Sbjct 453 GAAGAACAAAAGGCTCCTTATGATCAG 479
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51351569199
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5