BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G11080.1 Length=1372 Score E Sequences producing significant alignments: (Bits) Value Ahg489947 jgi|Araly1|489947|fgenesh2_kg.6__3081__AT4G11080.1 1808 0.0 Ahg942974 jgi|Araly1|942974|scaffold_603518.1 669 0.0 > Ahg489947 jgi|Araly1|489947|fgenesh2_kg.6__3081__AT4G11080.1 Length=1363 Score = 1808 bits (979), Expect = 0.0 Identities = 1258/1385 (91%), Gaps = 50/1385 (4%) Strand=Plus/Plus Query 1 ATGTCGACAGTTTCTTCAGATCCTGCTCATGCGAAGAAATCGAGAAACAGTAGAAAAGCG 60 ||| |||||||||| ||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1 ATGGCGACAGTTTCCTCAGATCCTGCTCCGGCGAAGAAATCGAGAAACAGTAGAAAAGCG 60 Query 61 TTAAAGCAAAAGAATGAGATCGTC--GAGTCATCACC---G--G-------TCTCAGA-C 105 || ||| ||||||||||||||||| ||||||||||| | | ||||| | | Sbjct 61 TTGAAGGAAAAGAATGAGATCGTCGAGAGTCATCACCATTGTTGTCACCAATCTCA-ACC 119 Query 106 AAGGGGAAAGAAACGAAGT-C---GTTTGAGAAAGATCTGATGGAGATGCAAGCGATGTT 161 ||||||||||||||||| | | ||| ||| |||| ||| |||| ||| | Sbjct 120 AAGGGGAAAGAAACGAAATCCAATGTTGGAG-AAGA--TGA---AGAT-----CGA-GAA 167 Query 162 GGAGAAGA-TGAAGA-TCG-AGAAGGAGAA-AACTGAGGATTTGTTGAAGGAGAAGGACG 217 ||| || | ||| || | | ||||||||| || || || | ||||| ||||||| | Sbjct 168 GGATAAAACTGAGGATTTGCTGAAGGAGAAGGAC-GA-GA--TCCTGAAGAAGAAGGAAG 223 Query 218 -AGATCTTGAGGAAGAAGGAAGTTGAACAGGAAAAACTTAAGACGGAGCTGAAGAAACTG 276 ||| || || || |||||| || |||||||| ||||||||||||||| |||| |||||| Sbjct 224 AAGAACTCGA-GACGAAGGACGTGGAACAGGAGAAACTTAAGACGGAGTTGAAAAAACTG 282 Query 277 CAGAAGATGAAGGAATTCAAGCCTAACATGACTTTTGCTTTTAGTCAATCTTTGGCACAA 336 ||||||||||| ||||||||||||||||||| |||||| |||| |||||||||||||||| Sbjct 283 CAGAAGATGAAAGAATTCAAGCCTAACATGAGTTTTGCGTTTACTCAATCTTTGGCACAA 342 Query 337 ACTgaagaagaaaagaagggaaagaagaagaagaagGATTGTGCTGAAACAAAGAGACCA 396 ||||||||||| |||||||| |||||||||||||||||||||| |||||||||||||||| Sbjct 343 ACTGAAGAAGATAAGAAGGGGAAGAAGAAGAAGAAGGATTGTGTTGAAACAAAGAGACCA 402 Query 397 TCAACACCATATATTTTGTGGTGTAAGGATAATTGGAACGAAGTGAAGAAACAGAATCCT 456 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 403 TCAACACCATATATTTTGTGGTGTAAGGATAATTGGAACGAAGTGAAGAAGCAGAATCCT 462 Query 457 GAAGCTGATTTCAAGGAGACTTCGAACATTCTGGGTGCTAAGTGGAAGGGGAT-T-AGTG 514 |||||||||||||||||||||||||| ||||| ||||||||||||| || | | |||| Sbjct 463 GAAGCTGATTTCAAGGAGACTTCGAATATTCTTGGTGCTAAGTGGA-GGAC-TCTGAGTG 520 Query 515 CT-GAAGAGAAGAAGCCTTATGAGGAGAAGTATCAGGCGGATAAGGAAGCTTATCTTCAG 573 | |||||||||||| |||||||||||||||||||| ||||||||||||||||||||| Sbjct 521 -TAGAAGAGAAGAAGTTTTATGAGGAGAAGTATCAGGTTGATAAGGAAGCTTATCTTCAG 579 Query 574 GTTATTACAAAGGAGAAGCGTGAGAGGGAAGCAATGAAGCTTCTTGATGATGAGCAGAAG 633 |||||||||||||||||||| || |||||||| |||||||||||||||||||| |||||| Sbjct 580 GTTATTACAAAGGAGAAGCGCGAAAGGGAAGCTATGAAGCTTCTTGATGATGAACAGAAG 639 Query 634 CAGAAAACTGCAATGGAATTGCTTGATCAGTATCTTCACTTTGTTCAGGAAGCTGAACAT 693 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 640 CAGAAAACTGCTATGGAATTGCTTGATCAGTATCTTCACTTTGTTCAGGAAGCTGAACAA 699 Query 694 GACAACAAGAAAAAGGCCAAGAAGATAAAGGATCCCCTGAAGCCTAAACAACCAATATCT 753 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 700 GACAACAAGAAAAAGGCCAAGAAGATAAAGGATCCCCTGAAGCCTAAACATCCAATATCT 759 Query 754 GCTTACCTGATCTATGCAAACGAGAGGAGAGCTGCTTTAAAAGGAGAAAACAAAAGCGTT 813 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 760 GCTTACCTGATCTATGCAAACGAGAGGAGAGCTGCTTTAAAAGGAGAAAACAAAAGCGTT 819 Query 814 ATTGAGGTCGCTAAGATGGCTGGAGAAGAGTGGAAGAACTTGTCGGAAGaaaaaaaGGCT 873 ||||||||||| |||||| ||||||||||||||||||| || ||||||||| |||||||| Sbjct 820 ATTGAGGTCGCAAAGATGACTGGAGAAGAGTGGAAGAATTTATCGGAAGAACAAAAGGCT 879 Query 874 CCTTATGATCAGATGGCGAAA-AAGAACAAGGAGATATATCTGCaagaaatggaaggata 932 ||||||||||||||||| ||| ||||||||||||||||| |||||||||||||||||||| Sbjct 880 CCTTATGATCAGATGGC-AAAGAAGAACAAGGAGATATACCTGCAAGAAATGGAAGGATA 938 Query 933 taaaagaacaaaggaagaagaagcaatgagccagaagaaagaagaagaagaaTTCATGAA 992 ||||| |||||||||||||||| | ||||||||||||||||||||||||||| ||||||| Sbjct 939 TAAAATAACAAAGGAAGAAGAAACCATGAGCCAGAAGAAAGAAGAAGAAGAACTCATGAA 998 Query 993 ACTCCATAAACAAGAAGCTCTCCAACTTCTCAAGAAGAAGGAGAAAACCGACAATATCAT 1052 ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| Sbjct 999 ACTCCATAAACAAGAAGCTCTTCAACTTCTCAAGAAGAAGGAAAAAACCGACAATATCAT 1058 Query 1053 AAAGAAGACGAAAGAGACGGCGAAGAACAAGAAAAAGAACGAGAATGTTGATCCTAACAA 1112 ||||||||||||||||||| | ||||||||||| |||||||||||||||||||||||||| Sbjct 1059 AAAGAAGACGAAAGAGACGACCAAGAACAAGAAGAAGAACGAGAATGTTGATCCTAACAA 1118 Query 1113 ACCCAAAAAGCCTACTTCTTCATACTTTCTCTTCTGCAAAGACGCAAGAAAGAGTGTGTT 1172 ||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1119 ACCCAAAAAGCCTGCTTCTTCATACTTTCTCTTCTGCAAAGAAGCAAGAAAGAGTGTGTT 1178 Query 1173 AGAAGAACATCCTGGGATCAACAACTCAACTGTTACTGCTCACATTTCATTGAAATGGAT 1232 |||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| Sbjct 1179 AGAAGAACATCCTGGGATCAACAACTCAACTGTTACCGCCCACATTTCATTGAAATGGAA 1238 Query 1233 GGAACTTGGTGAAGAGGAGAAACAAGTTTACAATAGCAAAGCTGCTGAGTTAATGGAAGC 1292 ||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1239 GGAACTTGGTGAAGAAGAGAAACAAGTTTACAATGGCAAAGCTGCTGAGTTAATGGAAGC 1298 Query 1293 TTACAAGAAAGAAGTGGAAGAGTACAATAAGACCAAGACTTCGTCGTAGAGAAAGAAAAA 1352 ||| |||| |||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1299 TTATAAGAGAGAAGTGGAAGAGTACAATAAGACCAAGACGTCGTCGTAGAGAAAGAAAAA 1358 Query 1353 TTAGA 1357 | ||| Sbjct 1359 TGAGA 1363 > Ahg942974 jgi|Araly1|942974|scaffold_603518.1 Length=505 Score = 669 bits (362), Expect = 0.0 Identities = 419/447 (94%), Gaps = 2/447 (0%) Strand=Plus/Plus Query 440 TGAAGAAACAGAATCCTGAAGCTGATTTCAAGGAGACTTCGAACATTCTGGGTGCTAAGT 499 ||||||| | ||||||||||||||||||||||||||||||||| ||| | |||||||||| Sbjct 34 TGAAGAAGCCGAATCCTGAAGCTGATTTCAAGGAGACTTCGAATATTTTTGGTGCTAAGT 93 Query 500 GGAAGGGGATTAGTGCT-GAAGAGAAGAAGCCTTATGAGGAGAAGTATCAGGCGGATAAG 558 |||| |||||||||| | |||||||| ||||||||||||||||||||||||||||||||| Sbjct 94 GGAAAGGGATTAGTG-TAGAAGAGAATAAGCCTTATGAGGAGAAGTATCAGGCGGATAAG 152 Query 559 GAAGCTTATCTTCAGGTTATTACAAAGGAGAAGCGTGAGAGGGAAGCAATGAAGCTTCTT 618 ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| Sbjct 153 GAAGCTTATCTTCAGGTTATTACAAAGGAGAAGCGAGAGAGGGAAGCCATGAAGCTTCTT 212 Query 619 GATGATGAGCAGAAGCAGAAAACTGCAATGGAATTGCTTGATCAGTATCTTCACTTTGTT 678 |||||| ||||||||||||||||||| |||||||||||||||||||||||||| |||||| Sbjct 213 GATGATCAGCAGAAGCAGAAAACTGCTATGGAATTGCTTGATCAGTATCTTCAGTTTGTT 272 Query 679 CAGGAAGCTGAACATGACAACAAGAAAAAGGCCAAGAAGATAAAGGATCCCCTGAAGCCT 738 || ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| Sbjct 273 CAAGAAGCTGAACAAGACAACAAGAAAAAGGCCAAGAAGATAAAGGATCCGTTGAAGCCT 332 Query 739 AAACAACCAATATCTGCTTACCTGATCTATGCAAACGAGAGGAGAGCTGCTTTAAAAGGA 798 ||||| |||||||||||||||||||||||||| |||||| |||||||||||||||||||| Sbjct 333 AAACATCCAATATCTGCTTACCTGATCTATGCTAACGAGGGGAGAGCTGCTTTAAAAGGA 392 Query 799 GAAAACAAAAGCGTTATTGAGGTCGCTAAGATGGCTGGAGAAGAGTGGAAGAACTTGTCG 858 |||||||||||||||||||| ||||||||||| | ||||||||||||||||| || ||| Sbjct 393 GAAAACAAAAGCGTTATTGAAGTCGCTAAGATAACCGGAGAAGAGTGGAAGAATTTATCG 452 Query 859 GAAGaaaaaaaGGCTCCTTATGATCAG 885 |||||| |||||||||||||||||||| Sbjct 453 GAAGAACAAAAGGCTCCTTATGATCAG 479 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 51351569199 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5