BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G11090.1
Length=1454
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489948 jgi|Araly1|489948|fgenesh2_kg.6__3082__AT4G11090.1 1917 0.0
> Ahg489948 jgi|Araly1|489948|fgenesh2_kg.6__3082__AT4G11090.1
Length=1400
Score = 1917 bits (1038), Expect = 0.0
Identities = 1297/1420 (91%), Gaps = 26/1420 (2%)
Strand=Plus/Plus
Query 38 GAAGAAGAAGATGAAGCTAAAATGGGAATCAATCTCTAATCTTCAACAAAACACATATCT 97
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1 GAAGAAGATGATGAAGCTAAAATGGGAATCAATCTCTAATCTTCAACAAAACACATTTCT 60
Query 98 CATAAAACTCGTCGCTGCAACACTTATAACTTGTCTCGCTTTTCGTTTCTTCGTCTTCCG 157
||| ||||||||||| || || ||||||||||||||||||||||||||||||||||||||
Sbjct 61 CATCAAACTCGTCGCCGCTACTCTTATAACTTGTCTCGCTTTTCGTTTCTTCGTCTTCCG 120
Query 158 CTTCGGCCAATTTTCCCCAGTTCAAGTGTCGGTGACCGGAAACTCCAATTCCCAGATTTC 217
|||||| ||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 121 CTTCGGTCAATTTTCCCCAGCTCAAGTGTCGGTGAACGGAAACTCCAATTCCCAGATTTC 180
Query 218 TCCGACGTCTG-TTATCTTATCGGATAACGAAGATCAAATTCCCGTCGATATTGAGGTGG 276
|||| |||| | |||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 181 TCCGTCGTC-GTTTATCTTATCGGATAATGAAGATCAAATTCCCGCCGATATTGAGGTGG 239
Query 277 AGAAGTGTGATCTATTTACTGGGAAATGGATTAAAGATCCTTTGGGACCAATCTACACGA 336
|||||||||||||||||| |||||||||||| ||||||||||||||||| || |||||||
Sbjct 240 AGAAGTGTGATCTATTTAATGGGAAATGGATCAAAGATCCTTTGGGACCGATATACACGA 299
Query 337 ATGAGTCATGTGGTATCGTTGTAGATGCTCACCAGAATTGCATCACTAATGGTCGACCTG 396
||| ||| ||||||||||||||||| | ||| ||||||||||| |||||||| | ||||
Sbjct 300 ATGGGTCGTGTGGTATCGTTGTAGACGGTCATCAGAATTGCATTACTAATGGGAGGCCTG 359
Query 397 ATTCTGGTTTTCTCAATTGGAAATGGAAGCCTAATGACTGTTCCTTGCCTCGGTTTGATT 456
|||| || |||||| | ||||||||||||||| ||||||||||||||||||||||||||
Sbjct 360 ATTCGGGGTTTCTCTACTGGAAATGGAAGCCTGATGACTGTTCCTTGCCTCGGTTTGATC 419
Query 457 CTCTGAGATTTCTGCAGCTTATGAGGAATAAATCTTGGGCTATAATCGGTGACTCCATTG 516
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 CTCTGAGGTTTCTGCAGCTTATGAGGAATAAATCTTGGGCTATAATCGGTGACTCCATTG 479
Query 517 CTCGTAACCATGTCGAGTCTTTGCTTTGTATGCTATCTACAGTTGAAAAACCTGTTGAAG 576
| ||||| ||||| ||||||||||||||||||||||||| |||||| ||||| |||||||
Sbjct 480 CCCGTAATCATGTTGAGTCTTTGCTTTGTATGCTATCTATAGTTGAGAAACCGGTTGAAG 539
Query 577 TGTATCACGATGAGAACTATAGATCGAAGCGTTGGCATTTTCC-TTCGTATAACTTTACG 635
||||||| ||||||||||| ||||||||||||||| |||| || || |||||||||||
Sbjct 540 TGTATCATGATGAGAACTACAGATCGAAGCGTTGGTATTTCCCGTTA-TATAACTTTACA 598
Query 636 GTATCCAACATTTGGTCACCTTTTCTTGTTCAAGCTGATATCTTTGAAGACTCAAATGGT 695
|||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |||
Sbjct 599 ATATCCAACATTTGGTCACCTTTTCTTGTTCAAGCTGCTATTTTTGAAGACTCAAACGGT 658
Query 696 GTCTCATCAGCTGCAGTTCAGCTTCATCTAGATAAACTCGACAATACATGGACTGATCTA 755
||||||||||||||||| |||||||| || || |||||||||||||| ||||||||||||
Sbjct 659 GTCTCATCAGCTGCAGTCCAGCTTCACCTTGACAAACTCGACAATACTTGGACTGATCTA 718
Query 756 TTCCCGAGCCTTGACTATGCGATCATCTCTTCAGGGGAATGGTTCTTGAAAACTGCGGTA 815
|| |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 719 TTTCCGAGCCTTGACTATGCGATCATCTCTTCAGGGGAATGGTTCCTGAAAACCGCGGTC 778
Query 816 TACCACGAGAATGCTAATCCCGTTGGATGCCATGGCTGCCCGGAGAGTTCGAACATGACG 875
||||||||||| |||| || ||| |||||||||||||||||||| ||||||||||||||
Sbjct 779 TACCACGAGAACGCTACTCTCGTCGGATGCCATGGCTGCCCGGAAAGTTCGAACATGACA 838
Query 876 GATTTAGGATTCGACTATGCTTACAATACGTCGTTGCGCCATGTTATGGACTTCATAGCG 935
||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 839 GATTTAGGATTTGACTATGCTTACAATACGTCGCTGCGCCATGTTATGGACTTCATAGCA 898
Query 936 AAATCTAAAACTAAAGGCATGATCTTTTTCCGGACTTCGATACCTGATCATTTTGAAGAT 995
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 899 AAATCTAAAACTAAAGGCATGATCTTTTTCCGGACTTCGATACCAGATCACTTTGAAGAT 958
Query 996 GGGGAATGGCATAACGGTGGGACTTGTAAGAAAACAGAACCGGTGGGTGAAGAGGCA-GT 1054
||||||||||||||||| ||||||||||||||||||||||||||| |||| |||| | ||
Sbjct 959 GGGGAATGGCATAACGGCGGGACTTGTAAGAAAACAGAACCGGTGAGTGAGGAGG-ATGT 1017
Query 1055 CGAGATGAAAGTTCTGAACAAGATATTGAGAGATGTTGAGATTAATCAATTCGAGAGAGT 1114
|||||||||||||||||||||||| |||||||||||||| ||| |||||||||||||||
Sbjct 1018 CGAGATGAAAGTTCTGAACAAGATCTTGAGAGATGTTGAAATTGTTCAATTCGAGAGAGT 1077
Query 1115 GGTTACGGAGATGGGTCAGGAGAGTGAGAATCTAAAGCTTCTGGATTTTGCTGGCATGTT 1174
|||||| |||| | || || | ||| |||||||| ||||||||||| |||||
Sbjct 1078 GGTTACCGAGAC----C-GG-GA---A---TCTTAAGCTTCTTGATTTTGCTGGAATGTT 1125
Query 1175 GCTGACTCGACCCGATGGTCATCCGGGTCCATATAGAGAGTTTAGGCCGTTTGATAAAGA 1234
||||||||||||||| || |||||||||||||| |||||||||||||||||||||| ||
Sbjct 1126 GCTGACTCGACCCGACGGGCATCCGGGTCCATACCGAGAGTTTAGGCCGTTTGATAAGGA 1185
Query 1235 TAAGAACGCTACGGTACAGAACGATTGTCTGCATTGGTGCTTGCCTGGTCCGATTGATCA 1294
||||||||| | |||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 1186 TAAGAACGCAAAGGTACAGAACGATTGTCTACATTGGTGCTTGCCTGGTCCAATTGATCA 1245
Query 1295 CTTGAACGATGTCATATTGGAGATCATAGTGAATGGTCGAACCGGTAAATAACCAGTTTG 1354
||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 1246 CTTGAACGATGTCATATTGGAGATCATAGTGAATGGTCGAACCGGGAAGTAACCAGTTTA 1305
Query 1355 CTTGT--ATGT-AGTCAATGGCTTAAAAACTGGATGAATTGAAAACAGAGGTTTGGTATA 1411
||||| || | ||||||| ||| ||| |||||||||| |||||||||||||||||||
Sbjct 1306 CTTGTGTATCTTAGTCAATTGCT-AAAT--TGGATGAATTTAAAACAGAGGTTTGGTATA 1362
Query 1412 TAGGTCATGTAAATTTTGGTAAACATGAAGAGATTTGGTT 1451
||||||||||||||| ||||||| |||||||||||||||
Sbjct 1363 TAGGTCATGTAAATT--GGTAAACTTGAAGAGATTTGGTT 1400
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54392869860
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5