BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G11100.1
Length=1188
Score E
Sequences producing significant alignments: (Bits) Value
Ahg895259 jgi|Araly1|895259|Al_scaffold_0006_3255 1061 0.0
> Ahg895259 jgi|Araly1|895259|Al_scaffold_0006_3255
Length=870
Score = 1061 bits (574), Expect = 0.0
Identities = 781/878 (89%), Gaps = 25/878 (3%)
Strand=Plus/Plus
Query 120 ATGTTTGGTTTAGAGAAAACGATGACTTTGGAGCATGAAATTCTGAAGGAGAATCATGAG 179
||||||| | |||||||| | || || |||||||||||||| || ||||||||| |||||
Sbjct 1 ATGTTTGATCTAGAGAAACCAATTACATTGGAGCATGAAATCCTCAAGGAGAATTATGAG 60
Query 180 ACTCTGTTGAAAGATTATGAGAGTCTTCAGGAGAGGATTAAGCATGCTGAGGAAGCTTAT 239
||||||| |||||||||||| |||||||| || |||||||||||||||||||||||||||
Sbjct 61 ACTCTGTCGAAAGATTATGAAAGTCTTCAAGAAAGGATTAAGCATGCTGAGGAAGCTTAT 120
Query 240 GAGGCTATTAAGTTGCATCATGAGAACAAAGCTAAGGAGCTTGAAGTGAGTAACAAACGC 299
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GAGGCTATTAAGTTGCATAATGAGAACAAAGCTAAGGAGCTTGAAGTGAGTAACAAACGT 180
Query 300 TTGCTTGAGGAATGTATGAAAGAGAGAAGGGAGAAGGCTAAGGTTAGGAAGACTTTTGAG 359
||||||||||| ||| ||| ||||||||| |||||||| ||||||| |||||||||||||
Sbjct 181 TTGCTTGAGGATTGTGTGAGAGAGAGAAGCGAGAAGGCGAAGGTTATGAAGACTTTTGAG 240
Query 360 GAGATGAAGAAGACAATGGAGAGTGAG-AGAACTGCTATTGTTGATGAGTTGAAGTCGAA 418
||||||||||||||||||||||||||| || | |||||| ||||||||||||| ||||||
Sbjct 241 GAGATGAAGAAGACAATGGAGAGTGAGAAG-ATTGCTATGGTTGATGAGTTGATGTCGAA 299
Query 419 GAATCAGGAGCTTTTGTTGGGGAAGAA-GAAAGAGGAAGAAGAGTTAGTGAAGATGGAGA 477
||||||||||||||||||| ||| || ||||||||| |||||||| ||||| |||||||
Sbjct 300 AAATCAGGAGCTTTTGTTGGCGAA-AAGGAAAGAGGAGGAAGAGTTGGTGAAAATGGAGA 358
Query 478 ATAAGTATGTTGAGTTAGCTGAGAAGTTTGATGTTGTTGAAAAGGAATGTGCTTACTTGA 537
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 GGAAGTATGTTGAATTAGCTGAGAAGTTTGATGTTGTTGAAAAGGAATGTGCTTACTTGA 418
Query 538 AGTCACTCTATGATGCGGAAGTAGTAGCTTCGGTTACT-CAAAGTGCTGTAATCTCAGGG 596
|||| ||||||||||||||||| |||||||||| |||| ||| |||||||| | ||||||
Sbjct 419 AGTCGCTCTATGATGCGGAAGTGGTAGCTTCGGGTACTGCAA-GTGCTGTACTGTCAGGG 477
Query 597 GTTGGAGAGACTGATAATCTTATTGGTCAAGGAGAGAACGAGGCT-AATCAGAATGTGAA 655
||||||||||||||| | |||||||||||||||||||||| | ||||| || | |||
Sbjct 478 AATGGAGAGACTGATAAGATCATTGGTCAAGGAGAGAACGAGG-TGAATCATAAAGCGAA 536
Query 656 CAATGCTGTGACAGATGCGATAATGATAAGTGATGAT-GAAAA--TGA---TAATA---A 706
||||||||| ||||||||||||||||||||||||||| | | ||| | ||| |
Sbjct 537 CAATGCTGTAACAGATGCGATAATGATAAGTGATGATAGCGATGCTGAACCTGATAGGCA 596
Query 707 TCCACCTA-TTGAGAGTAACATAAGCTCTCATCGGTCTGGTGATAGAAACCAAGAAGAAG 765
||| || | |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 597 TCCTCC-AGTTGAGAGTAACATAAGCTCTCATCGGTCTGTTGATAGAAACCAAGAAGAAG 655
Query 766 AAGGCAGGAACAGAGGAAACTCAGCGACTGAGAACCGAGCTTCGGGAGAAACCTTTACTC 825
|||| |||||||||| |||| |||| | ||||||||||||||||||||||||| |||| |
Sbjct 656 AAGGGAGGAACAGAGCAAACACAGCAAATGAGAACCGAGCTTCGGGAGAAACCATTACCC 715
Query 826 CGGTATCTGCTAATCATCCACCGCCTTTTTCTCCTTCATCGTC-ATCTTCATCATCATCA 884
||||||||| ||| |||||||||||||||||||||||||| || | | ||||||||||||
Sbjct 716 CGGTATCTGTTAAACATCCACCGCCTTTTTCTCCTTCATCATCGA-CATCATCATCATCA 774
Query 885 TCTTCAGACGGCGCTGA-GATTGTGCTTAAGCTGCCTCGTAATTGGCCTGAATGGGCAAT 943
|||||||| ||| ||| | ||||| |||||||||||| |||||||||||| ||||||||
Sbjct 775 TCTTCAGATGGCTATGAAG-TTGTGGTTAAGCTGCCTCATAATTGGCCTGACTGGGCAAT 833
Query 944 CCCGAAAGGTCCCGGGAA-GGATTCCAACAAGCCTTAG 980
||| |||||||| |||| || ||||||||||||||||
Sbjct 834 CCCAAAAGGTCCGGGGAGCGG-TTCCAACAAGCCTTAG 870
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44336952471
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5