BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G11120.1
Length=1492
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489950 jgi|Araly1|489950|fgenesh2_kg.6__3084__AT4G11120.1 2182 0.0
> Ahg489950 jgi|Araly1|489950|fgenesh2_kg.6__3084__AT4G11120.1
Length=1437
Score = 2182 bits (1181), Expect = 0.0
Identities = 1346/1424 (95%), Gaps = 17/1424 (1%)
Strand=Plus/Plus
Query 1 AAAACCATCACCGTCG-T-T-A-TCACAGTAACCAAACAACT-TTCATCGCC-GG-AGAA 53
|||||||||||||||| | | | ||||||||||||||||||| ||||||||| || | ||
Sbjct 1 AAAACCATCACCGTCGTTATCACTCACAGTAACCAAACAACTCTTCATCGCCGGGTAAAA 60
Query 54 CTGATTAACATATAAGAAAATGGCGTTTGCTAGAGCAGTGAGAAGACCAATTGGAGTCTT 113
|||||| ||||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 61 CTGATTGACATAGAAGAAAATGGCGTTTACTAGAGCAGTGAGAAGACCAATTGGAGTCTT 120
Query 114 TTATTATAGTGTTAGTAGTAGATTTAGTTCTGGAAATGAGTATTCTACTGTGGCAAGCAA 173
|||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct 121 TTATTATAGTGTTAGTGGTAGATTTAGTTCTGGAAATGATTATTCTACTGTGGCAAGCAA 180
Query 174 ATTCGAAACTTTGTCTCAGTACAAAAGCTCTGTACCGTCTGGTTACACAAGCCTTGTTCG 233
||| |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 181 ATTGGAAACTTTGTCTCAGTACAAAAGCTCTGTATCGTCTGGTTACACAAGCCCTGTTCG 240
Query 234 TGGTTTTGGGAATTTCATACGGAGTTTTAGTTCGGAAGCTCCTCCTGCTGTATCTGACCA 293
|||||||||||||||||||||||||||||||||||| |||||| | |||||||||||||
Sbjct 241 TGGTTTTGGGAATTTCATACGGAGTTTTAGTTCGGAGGCTCCT-C--CTGTATCTGACCA 297
Query 294 AATGAGTCTTATTAAGCAACTTAGGGAAAGAACTAGTGCTCCTATTAAAGATGTTAAGGC 353
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 GATGAGTCTTATTAAGCAACTTAGGGAAAGAACTAGTGCTCCTATTAAAGATGTTAAGGC 357
Query 354 TTCTTTAGTTGAATGCAATTGGGATCTTGAGGCTGCTCAGAAGGATTTGAGAAAGAGAGG 413
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 358 TTCTTTAGTTGAATGTAATTGGGACCTTGAGGCTGCTCAGAAGGATTTGAGAAAGAGAGG 417
Query 414 GAAAGTTTTGGCTTCGAAAAAGTCGTCACGGACTGCTGCAGAAGGAATGCTTGCCGTTGC 473
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 418 GAAAGTTTTGGCTTCGAAAAAGTCGTCACGGACTGCTGCAGAGGGAATGCTTGCGGTTGC 477
Query 474 TCAAAATGAAGGGAAAGTTGCTGTTATTGAACTTAACTGTGAGACTGATTTTGTTGCTAG 533
||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 478 TCAAAATGAGGGGAAAGTTGCTGTTATTGAACTTAATTGTGAGACAGATTTTGTTGCTAG 537
Query 534 GAATGAGATTTTCCAGTACTTGGCTTTAGCTATGGCAAAACATGCTTTGCTGGTTGAGAG 593
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 538 GAATGAGATTTTCCAGTACTTGGCTTTAGCTATGGCAAAACATGCTTTACTGGTTGAAAA 597
Query 594 TAGTTCGCAGCAAGTTTCTGGTGTCTTCCCCTTTGGGCCGGAGCTTTTTGAGGAGTTCAA 653
||| || || ||||||||||||||||| ||||||||||| ||||||||||||||||| ||
Sbjct 598 TAGCTCTCAACAAGTTTCTGGTGTCTTACCCTTTGGGCCTGAGCTTTTTGAGGAGTTTAA 657
Query 654 GCTTAACCTCGATCATCCAAAAGTTAATGGTGAAACAACGGTTTCAAACGCTGTTACAGA 713
||| || ||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 658 GCTCAATCTCGATCATCCAAAAGTGAATGGTGAAACCACGGTTTCAAACGCTGTTACAGA 717
Query 714 AGTAGCTGCAATCATGGGAGAGAATGTAAAATTTAGGAGAGGTTTCTTGATGTCAAAATC 773
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 AGTAGCTGCAATAATGGGAGAGAATGTAAAATTTAGGAGAGGTTTCTTGATGTCAAAATC 777
Query 774 TTCAGCAGGCGTCCTTTCTGCATATCTTCACACAAGTCCTCAACCAGGGTTGGGTCGTAT 833
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 TTCAGCAGGCGTCCTTTCTGCATATCTTCACACAAGTCCTCAACCAGGGTTGGGTCGTAT 837
Query 834 AGCTGGGATTGTATCTCTCGAAGTAGAAGGTGAAAATACTCAACTAGAGGCTATTCAGCG 893
|||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||
Sbjct 838 AGCTGGGATTGTATCTCTGGAAGTGGAAGGTGAAAATACTCAACTAGAGGCCATTCAGCG 897
Query 894 TGTAGGCTCAGAACTGGCTATGCATGTTGTAGCAGCAAAGCCTTTGTTTTTAAGCAAAGA 953
|||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 898 TGTAGGCTCAGAACTGGCTATGCAGGTTGTAGCAGCAAAGCCTTTGTTTCTAAGCAAAGA 957
Query 954 CCTTGTTTCTTCTGAAGCAATGGCAAATGAACGCGAGATTCTAAAGTCTCAGGCAGAAAG 1013
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 958 CCTTGTTTCTTCAGAAGCAATAGCAAATGAACGCGAGATTCTAAAGTCTCAGGCAGAAAG 1017
Query 1014 TACAGGCAAGAATCAGATGGCGATAGAGAAGATTGTGGAAGGGCGTCTCCGTAAGTATTT 1073
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1018 TACAGGCAAGAATCAGATGGCAATAGAGAAGATTGTGGAAGGGCGTCTCCGTAAGTATTT 1077
Query 1074 TGAAGAAGTTGCTCTAATGGAGCAAAAGTTTATTGTGAACGATGCTATAAACATTAAGAC 1133
||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1078 TGAAGAAGTTGCTTTAATGGAGCAAAAGTTTATCCTGAACGATGCTATAAACATTAAGAC 1137
Query 1134 ACTGGTGGATAATTTGTCCAAGGAGGTAGGTTCTCCAGTGAAGGTTACCGATTTTCTT-A 1192
|||| |||||||||||||||||||||| ||||||||||||||||||||| ||||| || |
Sbjct 1138 ACTGTTGGATAATTTGTCCAAGGAGGTGGGTTCTCCAGTGAAGGTTACCAATTTT-TTGA 1196
Query 1193 GAGTCGAGGTTGGGGAAGGAATCGAAAGGCTTGAAGCATCTGATGAACCAGTTGCTCAAA 1252
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1197 GAGTCGAGGTTGGCGAAGGAATCGAAAGGCTTGAAGCATCTGATGAACCTGTTGCTCAAA 1256
Query 1253 CTGCTTGAAGACAAAGAATCAACGACATGGTTTTAGATTTACAGAACTCTTTCCT-TCTT 1311
||||||||||| || ||||||| | |||||| ||||||||||||| ||||||| | ||||
Sbjct 1257 CTGCTTGAAGATAATGAATCAAGGCCATGGTGTTAGATTTACAGACCTCTTTC-TGTCTT 1315
Query 1312 TGGTTCCTTTAGAGTTCATGGCTTCAACGCCT-TCTTGAGATTATAGAATCTTT-CTCAT 1369
||||||||| || |||||||||||||| ||| ||||||||||||||||||||| | |||
Sbjct 1316 TGGTTCCTT-AGTGTTCATGGCTTCAATGCCGGTCTTGAGATTATAGAATCTTTTCCCAT 1374
Query 1370 GATTTTGTTTCTCACACAATATGGCAATAAGAGTGATTGTGCCT 1413
||||||||| |||||||||||| ||||||||||||||||||||
Sbjct 1375 AATTTTGTTTGTCACACAATATGACAATAAGAGTGATTGTGCCT 1418
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55840299170
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5