BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G11140.1
Length=1018
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489952 jgi|Araly1|489952|fgenesh2_kg.6__3086__AT4G11140.1 1175 0.0
Ahg482320 jgi|Araly1|482320|fgenesh2_kg.4__1380__AT2G33710.1 76.8 3e-13
> Ahg489952 jgi|Araly1|489952|fgenesh2_kg.6__3086__AT4G11140.1
Length=993
Score = 1175 bits (636), Expect = 0.0
Identities = 910/1032 (88%), Gaps = 60/1032 (6%)
Strand=Plus/Plus
Query 1 ATGGAGACAGAGAAGAAAGTTTCTCTCCCAAGAATCTTACGAATCTCTGTTACTGATCCT 60
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAGACAGCGAAGAAAGTTTCTCTCCCAAGAATCTTACGAATCTCTGTTACTGATCCT 60
Query 61 TACGCAACAGATTCGTCAAGCGACGAAGAAGAAGAAGTTGATTTTGATGC-ATTATCTAC 119
||||| |||||||| |||||||||||||||||||||| || |||||| || || | |||
Sbjct 61 TACGCTACAGATTCATCAAGCGACGAAGAAGAAGAAGATGGTTTTGAAGCAATCA-CTAG 119
Query 120 AAAACGACGTCGTGTTAAGAAGTACGTGAAGGAAGTGGTGCTTGATTCGGTGGTTTCTGA 179
||||||||||||||||||||| |||||||| |||||||| ||||| || |||||||||
Sbjct 120 AAAACGACGTCGTGTTAAGAAATACGTGAACGAAGTGGTTCTTGAATC---GGTTTCTGA 176
Query 180 TAAA-GAGAAGCCGATGAAGAAGAAGAGAAAGAAGCGCGTTGTTACTGTTCCAGTGGTTG 238
|||| || ||||||||||||||||||||||||||| | || | ||||| ||| |||||||
Sbjct 177 TAAAGGA-AAGCCGATGAAGAAGAAGAGAAAGAAGAGTGTAGCTACTGCTCCGGTGGTTG 235
Query 239 TTACGACGGCGACGAGGAAGTTTCGTGGAGTGAGGCAAAGACCGTGGGGAAAATGGGCGG 298
||||| ||||| |||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 236 TTACGGCGGCGGCGAGGAAGTTTCGTGGAGTGAGACAAAGACCTTGGGGAAAATGGGCGG 295
Query 299 CGGAGATTAGAGATCCGAGTAGACGTGTTAGGGTTTGGTTAGGTACTTTTGACACGGCGG 358
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 296 CGGAGATTAGAGATCCTAGTAGACGTGTTAGGGTTTGGTTAGGTACTTTTGACACGGCGG 355
Query 359 AGGAAGCTGCCATTGTTTACGATAACGCAGCTATTCAGCTACGTGGTCCTAACGCAGA-G 417
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |
Sbjct 356 AGGAAGCTGCCATTGTTTACGATAACGCTGCTATTCAGCTACGTGGTCCTAACGC-GCTG 414
Query 418 CTTAACTTCCCTCCTCCTCCGGTGACGGAGAATGTTGAAGAAG---CTTCGACGGAGGTG 474
||||||||| ||||||||||||||||||| |||| |||||||| ||||||||||||||
Sbjct 415 CTTAACTTCTCTCCTCCTCCGGTGACGGAAAATGGTGAAGAAGAAGCTTCGACGGAGGTG 474
Query 475 AAAGGAGTTTCGGATTTTATCATTGGCGGTGGAGAATGTCTTCGTTCGCCGGTTTCTGTT 534
||| | ||||| ||| |||| ||| ||||| | |||||||| ||||||||||||||||
Sbjct 475 GAAGAAACTTCGGGTTTAATCAGTGGTGGTGGTGGATGTCTTCATTCGCCGGTTTCTGTT 534
Query 535 CTCGAATCTCCGTTCTCCGGCGAGTCTACTGCG--G-TT------AAAGAGGA-GTTTGT 584
||| | |||||||||||||| |||||||| ||| | || |||||||| ||||
Sbjct 535 CTCCACTCTCCGTTCTCCGGTGAGTCTACGGCGAAGATTGGGGTGAAAGAGGAAGTTTC- 593
Query 585 CGGTGTATCGACGGCGGAGATTGTGGTTAAAAAGGAGCCGTCTTTTAACGGT-TCAGATT 643
||| ||||||||||||||||||||||||||| |||||||||| ||||||| | || ||||
Sbjct 594 CGGCGTATCGACGGCGGAGATTGTGGTTAAAGAGGAGCCGTCCTTTAACG-TCTCGGATT 652
Query 644 TCTCGGCGCCGTTGTTCTCGGACGACGACGTTTTTGGTTTCTC-GACGTCGATGAGTGAA 702
||||||||||||||||||||||||||||||| |||||||| || |||||||||||||||
Sbjct 653 TCTCGGCGCCGTTGTTCTCGGACGACGACGTGTTTGGTTT-TCCGACGTCGATGAGTGAT 711
Query 703 AGTTTCGGCGGCGATTTATTTGGAGATAATCTTTTTGCGGATATGAGTTTTGGATCCGGG 762
||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 712 TGTTTCGGCGGCGATTTATTCGGAGATAACCTTTTTGCGGATATGAGTTTTGGATCCGGG 771
Query 763 TTTGGATTCGGGTCTGGGTCTGGATTCTCCAGCTGGCACGTTGAGGACCATTTTCAAGAT 822
||||| ||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 772 TTTGGGTTCGGGTCTGG------ATTCTCCAGCTGGCACGTGGAGGACCATTTTCAAGAT 825
Query 823 ATTGGGGATTTATTCGGGTCGGATCCTGTCTTAACTGTTTAAGAAATAACTGGCCGTTTA 882
||||||||||||||||||||||||||| || || | || ||| ||||
Sbjct 826 ATTGGGGATTTATTCGGGTCGGATCCT--CT---CT-T--AA-------CTG----TTTA 866
Query 883 ACGGCGTTTAGTGAAGTTTTGTTACCGGCGACGGCGAGGAT-TaaaaaaaaaCGGCGATT 941
||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||||
Sbjct 867 ACGGCGTTTAGTGAAGTTTTGTTACCGGCGACGGCGAGGATATAAAAATAT-CGGCGATT 925
Query 942 TATTTTTTG-AA-TGAAGATTTGTTAAATATATTAAACTTTTTTGTAACTTAATTAATGG 999
| |||||| || ||||||||||||| |||||||||| |||| ||||||||||||||
Sbjct 926 TTTTTTTTATAAATGAAGATTTGTTATATATATTAAAGTTTTA---AACTTAATTAATGG 982
Query 1000 TGATTTTATTTT 1011
||||||| ||||
Sbjct 983 TGATTTT-TTTT 993
> Ahg482320 jgi|Araly1|482320|fgenesh2_kg.4__1380__AT2G33710.1
Length=1280
Score = 76.8 bits (41), Expect = 3e-13
Identities = 128/168 (76%), Gaps = 14/168 (8%)
Strand=Plus/Plus
Query 268 GTGAGGCAAAGACCGTGGGGAAAATGGGCGGCGGAGATTAGAGATCCGAGTA-GACGTGT 326
|||||||||||||||||||||||||||||||| |||||| | || |||| || | | |
Sbjct 298 GTGAGGCAAAGACCGTGGGGAAAATGGGCGGCCGAGATTCGTGACCCGAATAAGGCA-GC 356
Query 327 TAGGGTTTGG-TTAGGTACTTTTGACACGGCGGAGGAAGCTGCCATT-GTTTACGATAAC 384
| | || ||| || || || || ||||| || || ||||||||| || | || |||||
Sbjct 357 TCGTGTGTGGCTTGGG-ACGTTCGACACTGCCGAAGAAGCTGCC-TTAGCATATGATAAA 414
Query 385 GCAGCTATTC-AGCT-ACGTGGTC-CTAACGC-AGAGCTTAACTTCCC 428
|| || ||| || | | | |||| | || || | |||||||||||||
Sbjct 415 GCTGC-ATTTGAGTTTA-GAGGTCAC-AAGGCCA-AGCTTAACTTCCC 458
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37856056581
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5