BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G11150.1
Length=1085
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489953 jgi|Araly1|489953|fgenesh2_kg.6__3087__AT4G11150.1 1448 0.0
> Ahg489953 jgi|Araly1|489953|fgenesh2_kg.6__3087__AT4G11150.1
Length=1009
Score = 1448 bits (784), Expect = 0.0
Identities = 932/996 (94%), Gaps = 39/996 (4%)
Strand=Plus/Plus
Query 6 AGACAACTTCAAATTACTCAACACCACGTCGTGAAAATCCGATCTACG----tctctgtc 61
|||||||||||||||| ||| |||||||||| |||||||||||||||| ||||| ||
Sbjct 1 AGACAACTTCAAATTAGTCATCACCACGTCGCGAAAATCCGATCTACGTCTCTCTCTCTC 60
Query 62 tc-tctccaatctctctGCGCCACAGAATTGTGCGATTTACGAAAATCTCTGAAACCTCC 120
|| ||||||||||||||||||||||| | | ||||| | ||||||||
Sbjct 61 TCTTCTCCAATCTCTCTGCGCCACAG-A-------A-TTACG---A------AAACCTCC 102
Query 121 GATCGTTAACGGCGACCGCCGATTTTCCCGGTAAAAATGAACGACGGAGATGTATCGAGG 180
||||||||| || | ||| |||||||||||||||||||||||||||||||||
Sbjct 103 GATCGTTAA---CG---G-CGA-----CCGGTAAAAATGAACGACGGAGATGTATCGAGG 150
Query 181 CAGATCCAGCAGATGGTGAGATTTATCCGCCAAGAAGCGGAAGAGAAAGCAAACGAGATC 240
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 151 CAGATCCAGCAGATGGTGAGATTTATCCGCCAAGAAGCAGAAGAGAAAGCAAACGAGATC 210
Query 241 TCGGTTTCTGCTGAAGAAGAATTCAACATTGAGAAACTCCAGCTTGTTGAGGCGGagaag 300
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 211 TCGGTTTCCGCTGAAGAAGAATTCAACATTGAGAAACTTCAGCTTGTTGAGGCGGAGAAG 270
Query 301 aagaagatcaggcaagattatgagaagaaggagaagcaagctgatgttcgcaagaagatT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 271 AAGAAGATCAGGCAAGATTATGAGAAGAAGGAGAAGCAAGCTGATGTTCGCAAGAAGATT 330
Query 361 GATTACTCTATGCAGCTAAATGCATCAAGGATCAAAGTTCTTCAAGCGCAAGACGATATT 420
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 331 GATTACTCTATGCAGCTAAATGCTTCAAGGATCAAAGTTCTTCAAGCGCAGGACGATATT 390
Query 421 GTCAATGCCATGAAAGACCAAGCAGCTAAGGATCTTCTGAACGTTAGTCGCGATGAGTAT 480
||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||
Sbjct 391 GTCAATGCCATGAAAGACCAAGCTGCTAAGGATCTTCTGAATGTGAGTCGCGATGAGTAT 450
Query 481 GCCTACAAACAGCTCCTCAAGGATCTAATTGTTCAGTGTTTGCTTCGGTTGAAAGAACCT 540
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 451 GCCTACAAACAGCTTCTCAAGGATCTGATTGTTCAGTGTTTGCTTCGGTTGAAAGAACCT 510
Query 541 TCTGTGTTGTTGCGTTGTCGTGAAGAGGACTTGGGTTTAGTGGAAGCTGTACTTGATGAC 600
||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 511 TCTGTGTTGTTGCGTTGTCGTGAAGAGGACTTGGGTTTAGTTGAAGCTGTGCTTGATGAT 570
Query 601 GCAAAGGAGGAATATGCTGGTAAAGCAAAGGTTCATGCCCCAGAGGTTGCTGTTGACACA 660
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 571 GCAAAGGAGGAATATGCTGGCAAAGCAAAGGTTCATGCCCCAGAGGTCGCTGTTGACACA 630
Query 661 AAAATATTCCTTCCCCCTCCTCCTAAATCTAATGATCCTCATGGTCTCCACTGCTCTGGA 720
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 631 AAAATATTCCTTCCTCCTCCTCCTAAATCTAATGATCCTCATGGTCTCCACTGCTCTGGA 690
Query 721 GGTGTTGTGTTAGCTTCTCGTGATGGGAAAATCGTGTGCGAGAACACACTTGATGCGCGT 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 691 GGTGTTGTGTTAGCTTCTCGTGATGGGAAAATCGTGTGCGAGAACACACTTGATGCGCGT 750
Query 781 CTTGATGTGGCATTCCGTATGAAACTCCCAGTGATCCGTAAGTCGTTGTTCGGCCAAGTT 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 751 CTTGATGTGGCATTCCGTATGAAACTCCCAGTGATCCGTAAGTCGTTGTTCGGCCAAGTT 810
Query 841 ACTGCCTGATGAAAGAAAGGAAAAGAGAAAAGAGATTATTCAAACCGGTTTGCGTTTGGT 900
|||||||||||||||||||| ||||||| ||||| ||||||||||||||| |||||||
Sbjct 811 ACTGCCTGATGAAAGAAAGGGAAAGAGA---GAGATGATTCAAACCGGTTTGTGTTTGGT 867
Query 901 TATTTACCTATTTTGGGAGAGATTTCTCTTT-GTTGTGATTCTTTGTATTTTGCAAAATC 959
|||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 868 TATTTACCTATTTTGGGAGAGAAATCTCTTTTGTTGTGATTCTTTGTATTTTGCAAAATC 927
Query 960 TTACTTTGGTGCCAAACCCATCGAACGCTTCttttt 995
||||||||||||||||||||||||||||||||||||
Sbjct 928 TTACTTTGGTGCCAAACCCATCGAACGCTTCTTTTT 963
Score = 82.4 bits (44), Expect = 6e-15
Identities = 46/47 (98%), Gaps = 0/47 (0%)
Strand=Plus/Plus
Query 1027 TGTGTGTTATCATGGCTATACAAATAAATAAAATGAAAGACTTCTTT 1073
||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 963 TGTGTGTTATCATGGCTATACAAATAAATAAAATGAAAGACATCTTT 1009
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40410292020
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5