BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G11160.1
Length=2633
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489954 jgi|Araly1|489954|fgenesh2_kg.6__3088__AT4G11160.1 3707 0.0
> Ahg489954 jgi|Araly1|489954|fgenesh2_kg.6__3088__AT4G11160.1
Length=2361
Score = 3707 bits (2007), Expect = 0.0
Identities = 2241/2355 (95%), Gaps = 11/2355 (0%)
Strand=Plus/Plus
Query 260 CATTTTTGTCAAGTTTGTTTGGTTTGGGCATTCAAGCCTCTTTTAGAATAGGTTTGGTTC 319
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 14 CATTTTTGTCCAGTTTGTTTGGTTTGGGCATTCAAGCCTCTTTTAGAATAGGTTTGGTTC 73
Query 320 TTCCTC--G-AGTAGTAGCATCTACAGAGAGACAGATTTCCTCTACGGTTTTAAAAAGAG 376
|||| | | ||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 74 TTCCACGAGTAGTAGTAGCATCTACAGAGAGGCAGATTTCCTCTACGGTTTCAAAAAGAG 133
Query 377 CTTCTGAAAGTGTCTCTTTTTCATTCGCTCCGTACATAAATGGGTTTGGTTTTAGTTCGT 436
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 134 CTTCTGAAAGTGTCTCTTTTTCATTCGCTCGGTACATAAATGGGTTTGGTTTTAGTTCGC 193
Query 437 TATCAAATTGGTCTCGTAGTTATGAATCTTTCCCTACTGAAACATCCATAAGGTATTTTC 496
|||||||||||||||||||| ||||||||||||||| || ||||||||||||||||||||
Sbjct 194 TATCAAATTGGTCTCGTAGTCATGAATCTTTCCCTAGTGGAACATCCATAAGGTATTTTC 253
Query 497 ATGCGAGTCGAGAAACATTGGCGAAAAGAAAAGAGGATGCTGATCGACTGCTGAGTCATC 556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 254 ATGCGAGTCGAGAAACATTGGCGAAAAGAAAAGAGGATGCTGATCGACTGCTGAGTCATC 313
Query 557 GTGAACGCAAGAAACAGACTGTGAAAACGAAAGGAAAGTTCTCAAAACGGGAGaaaaaaa 616
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 314 GTGAACGCAAGAAACAGACTGTGAAAACGAAAGGAAAGTTCTCTAAACGGGAGAAAAAAC 373
Query 617 CAGATAAGCCACCTGTTGAAGCTCCTTATGTGCCTCCTAGGCTGAAAAGATTGGCAAAGG 676
| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 374 CGGATAAGCCACCTGTTGAAGCTCCTTATGTGCCTCCTAGGCTGCAAAGATTGGCAAAGG 433
Query 677 GATTGCCTGGGAAGACTGTCGACATATTTGAAGGGATGACACTACTTGAGCTCTCCAAGC 736
||||||||| |||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 434 GATTGCCTGAGAAGACGGTCGACATATTCGAAGGGATGACACTACTTGAGCTCTCCAAGC 493
Query 737 GTACTGGTGAGTCTGTGGCGGTTTTGCAGAGCATTCTCATTAATGTTGGGGAAACTTTTA 796
||||||||||||| ||||| |||||||||||||||||||| |||||||| ||||||||||
Sbjct 494 GTACTGGTGAGTCAGTGGCAGTTTTGCAGAGCATTCTCATCAATGTTGGTGAAACTTTTA 553
Query 797 GTTCAGAATTCGACACAATCAGTGTTGATGTCGCCGAGCTTCTTGCTATGGAAATCGGGA 856
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 554 GTTCAGAATTCGACACAATCAGTGTTGATGTCGCCGAGCTTCTTGCAATGGAAATCGGAA 613
Query 857 TCAACGTAAGGAGGCAACATTCTACAGAAGGATCTGAGATTCTTCCACGGCCTCCAGTTG 916
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 614 TTAACGTAAGGAGGCAACATTCTACAGAAGGATCTGATATTCTTCCACGGCCTCCAGTTG 673
Query 917 TAACCGTAATGGGCCATGTCGATCATGGAAAAACCTCGTTGCTGGATGCTTTAAGAAACA 976
||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 674 TAACCGTAATGGGCCATGTCGATCATGGAAAAACCTCGTTGTTGGATGCATTAAGAAACA 733
Query 977 CCTCTGTTGCAGCAAGAGAAGCTGGTGGAATCACTCAGCACGTGGGTGCTTTCGTGGTAG 1036
|||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 734 CCTCTGTTGCGGCAAGAGAAGCTGGTGGAATCACTCAGCATGTGGGTGCTTTCGTGGTGG 793
Query 1037 GCATGCCGGATTCTGGCACTTCAATCACATTCCTCGACACACCTGGCCATGCCGCTTTCA 1096
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 794 GCATGCCGGATTCTGGCACTTCAATCACATTTCTCGACACACCTGGCCATGCCGCTTTCA 853
Query 1097 GCGAGATGCGAGCTCGGGGAGCTGCTGTGACTGATATAGTCGTCTTGGTGGTTGCTGCTG 1156
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 854 GCGAGATGCGAGCTCGGGGTGCTGCTGTGACTGATATAGTCGTCTTGGTGGTTGCTGCTG 913
Query 1157 ATGATGGGGTAATGCCGCAGACACTCGAGGCTATTGCGCACGCTAGATCAGCGAATGTTC 1216
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 914 ATGATGGGGTAATGCCACAGACACTCGAGGCTATTGCGCACGCTAGATCAGCGAATGTGC 973
Query 1217 CGGTTGTGGTTGCGATCAATAAATGCGATAAACCTGGAGCTAATCCGGAAAAAGTTAAGT 1276
|| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 974 CGATTGTGGTTGCGATCAATAAATGCGATAAACCAGGAGCTAATCCGGAAAAAGTTAAGT 1033
Query 1277 ACCAGCTCACGTCTGAGGGGATAGAGCTTGAGGATATTGGAGGAAATGTTCAGGCTGTTG 1336
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1034 ACCAGCTCACGTCTGAAGGGATAGAGCTCGAGGATATTGGAGGAAATGTTCAGGCTGTTG 1093
Query 1337 AGGTATCTGCAGCGAAGAGTACAGGGCTAGACAAATTAGAAGAAGCTCTGCTTCTCCAAG 1396
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1094 AGGTATCTGCAGCGAAGAATACAGGGCTAGACAAATTAGAAGAAGCTCTGCTTCTCCAAG 1153
Query 1397 CTGTGGATATGGACCTGAAAGCACGTGTGGATGGACCAGCTCAAGCATATGTGGTGGAGG 1456
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1154 CCGTGGATATGGACCTCAAAGCACGTGTGGATGGACCAGCTCAAGCATATGTGGTGGAGG 1213
Query 1457 CTCGGCTTGACAAAGGCCGTGGACCGTTAGCCACCATTATTGTAAAAGCCGGAACTTTGG 1516
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 1214 CTCGGCTTGACAAAGGCCGTGGACCGTTAGCCACCATAATTGTAAAAGCCGGAACCTTGG 1273
Query 1517 TTAGGGGTCAGCATGTAGTCATTGGGTGTCAGTGGGGAAGACTCAGGGCTATTCGGGACA 1576
| |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 1274 TGAGGGGTCAGCATGTAGTCATCGGGTCTCAGTGGGGAAGACTCAGGGCTATTCGGGACA 1333
Query 1577 TGATCGGTAAGACAACAGACCGAGCAACACCAGCGATGCCCGTCGAGATTGAAGGGCTTA 1636
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1334 TGATCGGTAAGACAACAGACCGAGCAACACCAGCGATGCCCGTCGAGATTGAAGGGCTTA 1393
Query 1637 AAGGTCTTCCAATGGCTGGCGACGATGTGATTGTGGTGGAATCAGAGGAACGCGCAAGAA 1696
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |
Sbjct 1394 AAGGTCTTCCAATGGCTGGCGACGATGTCATTGTGGTGGAATCAGAGGAACGCGCGAGGA 1453
Query 1697 TGCTGAGCGAAGGGAGGAAAAGAAAATATGAGAAAGATCGGTTGTTGAAAGCAGAGGAAG 1756
|||| ||||||||| | ||||| |||||||| |||||||||||||| |||||||||||||
Sbjct 1454 TGCTTAGCGAAGGGCGAAAAAGGAAATATGAAAAAGATCGGTTGTTAAAAGCAGAGGAAG 1513
Query 1757 CGAGATTAGAGGAAGCAGCAGCGAGATTGGAAACAGAGTCTGAAGAAGGGTTTGTTCGGG 1816
||||| |||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1514 CGAGAATAGAGGAAGCCGCAGCGAGAATGGAAACAGAGTCTGAAGAAGGGTTTGTTCGGG 1573
Query 1817 TTGAATTACCGATAGTAGTGAAATCAGATGTGCAAGGGACTGCACAGGCTGTTGCTGATG 1876
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1574 TTGAATTACCGATAGTTGTGAAATCGGATGTGCAAGGGACTGCACAGGCTGTTGCTGATG 1633
Query 1877 CGTTAAGAACATTAAATAGCCCACAGGTGTCTGTGAACATTGTTCATAGCGGAGTGGGAG 1936
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 1634 CGTTAAGAACATTAAATAGCCCACAGGTATTTGTGAACATTGTTCATAGCGGAGTGGGAG 1693
Query 1937 CAATATCTCACTCTGATTTGGACTTGGCACAAGCTTGCGGTGCGTGTATTGTTGGGTTTA 1996
|||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 1694 CAATTTCTCACTCTGATTTGGACTTGGCACAAGCTTGCGGTGCATGTATCGTTGGGTTTA 1753
Query 1997 ACGTTAAGGGTGGAAGTACTGGTAATCTTTCTGCGGCTCAAGGCAGCGTCAAGGTATTCC 2056
||||||||||||||||| ||| |||||||||||||||||||| |||||||||||||||||
Sbjct 1754 ACGTTAAGGGTGGAAGTTCTGCTAATCTTTCTGCGGCTCAAGCCAGCGTCAAGGTATTCC 1813
Query 2057 ATCACCGTGTGATATACCATTTACTCGAAGACATCGGGAACTTGATCGTAGAAAAAGCAC 2116
| ||||| |||||||||||||| || ||||||||||||||||||||||||||||| ||||
Sbjct 1814 ACCACCGAGTGATATACCATTTGCTTGAAGACATCGGGAACTTGATCGTAGAAAAGGCAC 1873
Query 2117 CAGGAGTTTCGGAGATGGAGGTGTCTGGTGAAGCCGAGGTACTTAGCATATTCAAGATCT 2176
||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||
Sbjct 1874 CAGGAGTTTCGGAGATGGAGGTGGCTGGTGAAGCCGAGGTACTTAGCATTTTCAAAATCT 1933
Query 2177 TAGGAAAGAGAAGAACCGAAGAAGATGGAGTAAACATCGCAGGTTGCAAAGTGATGGATG 2236
||||||||||||||||||||||||||||||||| ||| |||||||||||||| |||||||
Sbjct 1934 TAGGAAAGAGAAGAACCGAAGAAGATGGAGTAAGCATTGCAGGTTGCAAAGTAATGGATG 1993
Query 2237 GTCGGGTATGTAGAAGCGGACTCATGAGGCTGTTACGAAGCGGAGAAGTGGTCTTCGAAG 2296
|||||||||||||||| ||||||||||||||||| || ||||||||||||||||| ||||
Sbjct 1994 GTCGGGTATGTAGAAGTGGACTCATGAGGCTGTTGCGGAGCGGAGAAGTGGTCTTTGAAG 2053
Query 2297 GCTCGTGTGCGTCGCTGAAACGGGAGAAACAAGACGTGGAACAGGTCGGGAAAGGGAACG 2356
||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 2054 GCTCGTGCGCGTCGCTGAAACGAGAGAAACAAGACGTGGAACAGGTAGGGAAAGGGAACG 2113
Query 2357 AGTGTGGGCTTGTGTTTGGAGATTGGAATGATTTTAGAGTGGGAGATGTGATTCAATGCA 2416
||||||| |||||| | ||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 2114 AGTGTGGACTTGTGATGGGAGATTGGAATGATTTTAGAGTCGGAGATGTGATTCAGTGCA 2173
Query 2417 TGGAACCAGTCATTAGAAAACCTAAATTCATATCCTCTGAGAGTGGAGCTGTGAGAATTG 2476
|||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2174 TGGAGCCAGTCATTAGGAAACCTAAATTCATTTCCTCTGAGAGTGGAGCTGTGAGAATTG 2233
Query 2477 AATGCTGAGAGAGCTACTAAACCGTAAAACTCCTAAATCAATTAAATCTGATTGTTTAGG 2536
|||||||||| |||||||||| |||||||||| || |||||||||||||||||||||
Sbjct 2234 AATGCTGAGAT--CTACTAAACCTTAAAACTCCTTAA--AATTAAATCTGATTGTTTAGG 2289
Query 2537 ATATTGATTTTTGG-TCTTACGCTGATGATTATTTCTTTTGTTATACTAGAAAACTGTCT 2595
||||||| ||||| | |||||||||| ||| ||||||||| ||| | ||||||| |||
Sbjct 2290 ATATTGAATTTTGCCTGTTACGCTGATTATTTTTTCTTTTGATAT--T-GAAAACTATCT 2346
Query 2596 TATTATCAAAAGAAA 2610
|||||||||||||||
Sbjct 2347 TATTATCAAAAGAAA 2361
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 99301268715
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5