BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G11175.1

Length=737
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg327268 jgi|Araly1|327268|fgenesh1_pm.C_scaffold_6002488           623    6e-178


> Ahg327268 jgi|Araly1|327268|fgenesh1_pm.C_scaffold_6002488
Length=429

 Score =  623 bits (337),  Expect = 6e-178
 Identities = 400/430 (93%), Gaps = 5/430 (1%)
 Strand=Plus/Plus

Query  76   ATGCTTCAACTCTGCTCCAC-TTTCCGTCCTCAACTTCTTCTTCCT--T-GTCAATTCCG  131
            |||||||||||||||||| | ||| ||||||||||| |||||||||  | ||||||||||
Sbjct  1    ATGCTTCAACTCTGCTCCGCGTTT-CGTCCTCAACTCCTTCTTCCTCCTCGTCAATTCCG  59

Query  132  ATTTACAAATGGCGTTTTGATTCCCCAAATAAACTATGTTGCAAGCAATTCAGTTGTGAA  191
             |||||  ||||  ||||||||| ||||||||||| ||||| ||||||||||||||||||
Sbjct  60   GTTTACTGATGGAATTTTGATTCGCCAAATAAACTTTGTTGGAAGCAATTCAGTTGTGAA  119

Query  192  TATCCGGCCAATGATACGATGCCAGAGAGCAAGCGGAGGAAGAGGAGGAGCTAATAGAAG  251
            | |||||||| | ||||| ||||||||||| |||||||| |||||||||||||| |||||
Sbjct  120  TCTCCGGCCAGTCATACGGTGCCAGAGAGCGAGCGGAGGTAGAGGAGGAGCTAACAGAAG  179

Query  252  CAAACCTGCTAAGCCGCAAGTTAAAGAAGGAAGCAACAAAACAGTAATCGAAGGTTTAGT  311
            ||||||||| ||||| |  |||||||||||||||||||||||||||||||||||||||||
Sbjct  180  CAAACCTGCAAAGCCTCCTGTTAAAGAAGGAAGCAACAAAACAGTAATCGAAGGTTTAGT  239

Query  312  AACCGAATCGCTACCTAATGGAATGTTTCGAGTCGATTTGGAGAATGGTGACAACATTCT  371
            ||||||||| |||||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct  240  AACCGAATCACTACCTAATGGAATGTTTAGAGTCGATTTGGAGAATGGTGATAACATTCT  299

Query  372  TGGTTATATTTGTGGTAAGATTAGGAAGAATTTCATTCGGATACTCCCCGGTGATAAAGT  431
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  300  TGGTTATATTTGTGGTAAGATTAGGAAGAATTTCATTCGGATACTTCCCGGTGATAAAGT  359

Query  432  GAAAGTCGAAATGAGTGTTTATGATTCTACTAAAGGTCGTATCATTTTCAGAATGAGTAG  491
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  360  GAAAGTCGAAATGAGTGTTTATGATTCTACTAAAGGTCGTATCATTTTCAGAATGAGTAG  419

Query  492  TAGAGACTAA  501
            ||||||||||
Sbjct  420  TAGAGACTAA  429



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27143516904


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5