BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G11180.1
Length=715
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489955 jgi|Araly1|489955|fgenesh2_kg.6__3089__AT4G11180.1 961 0.0
Ahg942957 jgi|Araly1|942957|scaffold_603501.1 189 2e-47
> Ahg489955 jgi|Araly1|489955|fgenesh2_kg.6__3089__AT4G11180.1
Length=674
Score = 961 bits (520), Expect = 0.0
Identities = 626/677 (92%), Gaps = 7/677 (1%)
Strand=Plus/Plus
Query 1 ACTTAACACTCTAACAATGACAAATCAAATCTACAAACAAGTATTTTCCTTCTTCTTATC 60
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1 ACTTAACACTCTAACAATGGTAAATCAAATCTACAAACAAGTATTTTCCTTCTTCTTATC 60
Query 61 CGTTTTACTTCTCCAATCTAGTACTGTCTCATACGTCCCAAAGTCATTTGACCTAAAGAA 120
|||||||||||||||||| ||||||||||||||||||| ||||||||| |||||||| ||
Sbjct 61 CGTTTTACTTCTCCAATCCAGTACTGTCTCATACGTCCGAAAGTCATTCGACCTAAACAA 120
Query 121 ACCATGCAAGCATTTCGTCCTCTACCTCCATAACATCGCCTACGACGGTGATAACGCGGC 180
|||||||| ||||||||| || ||||||||||||||||||||||| | ||||||||||||
Sbjct 121 ACCATGCAGGCATTTCGTACTTTACCTCCATAACATCGCCTACGATGATGATAACGCGGC 180
Query 181 AAATGCCACGGCAGCAACAATCGTGAAACCTTTGGGACTAGGGGATCATAGTTTTGGGGA 240
|||||||| ||||||||||||||||| |||||||||||||||||| |||| ||| ||||
Sbjct 181 TAATGCCACAGCAGCAACAATCGTGAACCCTTTGGGACTAGGGGATTATAG-TTTCGGGA 239
Query 241 -GTTAATCATAAT-TAACAACCCTGTGACACTGGACCAGAACTATCTCTCGAAACCAGTG 298
| |||| || || | || ||||||| ||| |||||||||||||||||||||||||||||
Sbjct 240 GGGTAATTAT-ATGTGACGACCCTGTAACAATGGACCAGAACTATCTCTCGAAACCAGTG 298
Query 299 GCTCGTGCCCAAGGCTTCTACTTTTACAACATGAAGACAAATTACAACGCTTGGGTCGCT 358
|||||||||||||| |||||||| ||||||| |||||| |||| |||| |||||||||||
Sbjct 299 GCTCGTGCCCAAGGATTCTACTTCTACAACAAGAAGACGAATTTCAACACTTGGGTCGCT 358
Query 359 TGGACATTGGTATTCAATTCGACAAAGCACAAAGGGACATTTACCATAATGGATGCAAAT 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 TGGACATTGGTATTCAATTCGACAAAGCACAAAGGGACATTTACCATAATGGATGCAAAT 418
Query 419 CCTTTTGGTTTGCAGCCGGCCAGAGATCTATCGATCGTTGGTGGGACTGGTGACTTCCTC 478
|||| |||| || ||||| ||||||| ||| ||||||| |||||||||||||||||||||
Sbjct 419 CCTTATGGTATGGAGCCGACCAGAGACCTAGCGATCGTAGGTGGGACTGGTGACTTCCTC 478
Query 479 ATGACTCGTGGGATCGCTACATTCAAGACCAAACTCACTCAAGGCAGTAAGTATTTTTGT 538
|||||||||||||||||||| || |||||||||||| |||||||||||||||||||||||
Sbjct 479 ATGACTCGTGGGATCGCTACGTTGAAGACCAAACTCTCTCAAGGCAGTAAGTATTTTTGT 538
Query 539 GTGGAAATGAATATTAAACTTTATGAATGTTACTAATATGTGT--CTTGGGATTGATCTT 596
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 539 TTGGAAATGAATATTAAACTTTATGAATGTTACTAATATGTGTGTCTTGGGATTGATGTT 598
Query 597 CGTGTGTTGGCAGTTTATTTGCTTTCTTTGTTTTTAGTTGATGTTGTTCCAAATTTCAAT 656
||||||||||| ||||||| |||| |||||||| |||||||||||||||||||||||||
Sbjct 599 TGTGTGTTGGCATTTTATTTTCTTTATTTGTTTT-AGTTGATGTTGTTCCAAATTTCAAT 657
Query 657 AAATGGTATTGAAATAT 673
|||||||||||||||||
Sbjct 658 AAATGGTATTGAAATAT 674
> Ahg942957 jgi|Araly1|942957|scaffold_603501.1
Length=207
Score = 189 bits (102), Expect = 2e-47
Identities = 160/187 (86%), Gaps = 8/187 (4%)
Strand=Plus/Plus
Query 386 CACAAAGGGACATTTACCATAATGGATGCAAATCCTTTTGGT-TTGCAGCCGGCCAGAGA 444
|||||||||||||| |||||||||||||| ||||| | | || ||||| | |||||
Sbjct 1 CACAAAGGGACATTGACCATAATGGATGCGAATCC----GATAATGGAGCCGACTAGAGA 56
Query 445 TCTATCGATCGTTGGTGGGACTGGTGACTTCCTCATGACTCGTGGGATCGCTACATT-CA 503
|| || |||||||||||||||||||||||||||||||||| |||||||||||| || ||
Sbjct 57 CCTCTCCATCGTTGGTGGGACTGGTGACTTCCTCATGACTCATGGGATCGCTACGTTACA 116
Query 504 AGACCAAACTCACTCAAGGCAGTAAGTATTTTTGTGTGGAAATGAATATTAAACTTTATG 563
|||| |||||| ||||||||||| |||||| ||| | |||||| |||||||||| ||||
Sbjct 117 -GACCGAACTCATTCAAGGCAGTA-GTATTTCTGTTTCGAAATGGATATTAAACTCTATG 174
Query 564 AATGTTA 570
|||||||
Sbjct 175 AATGTTA 181
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26304812730
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5