BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G11190.1
Length=707
Score E
Sequences producing significant alignments: (Bits) Value
Ahg942958 jgi|Araly1|942958|scaffold_603502.1 804 0.0
Ahg942957 jgi|Araly1|942957|scaffold_603501.1 198 4e-50
> Ahg942958 jgi|Araly1|942958|scaffold_603502.1
Length=597
Score = 804 bits (435), Expect = 0.0
Identities = 522/564 (93%), Gaps = 6/564 (1%)
Strand=Plus/Plus
Query 5 AATGGCAAACCAAATCTACATAATCTCCTTGATCTTCTTGTCTGTGTTACTTTATCAATC 64
||||||||||||||||||| || |||||||||||||||| ||||| |||||||| || ||
Sbjct 22 AATGGCAAACCAAATCTACTTATTCTCCTTGATCTTCTTCTCTGTTTTACTTTACCAGTC 81
Query 65 CACTACCGTCTTATCTTTCCGACAACCATTCA-ACCTAGCGAAACCATGCAAGCGTTTCG 123
||||||| |||||||||||| | || |||| | |||||||||||||||||||||||||||
Sbjct 82 CACTACCATCTTATCTTTCCAAAAATCATT-AGACCTAGCGAAACCATGCAAGCGTTTCG 140
Query 124 TCTTCTACCTCCATAATGTTGCCTACGACGGTGATAACACGGATAATGCTACATCAGCAG 183
||||| |||||||||||||||||||||| |||||||||| ||||||||| || |||||||
Sbjct 141 TCTTCCACCTCCATAATGTTGCCTACGATGGTGATAACATGGATAATGCCACGTCAGCAG 200
Query 184 CAATTGTTAACCCTTTAGGTCTAGGAGACTTCAGTTTTGGGAAGTTTGTGATCATGGACA 243
||||||| ||||| ||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 201 CAATTGTGAACCCATTAGGACTAGGAGACTTCAATTTTGGGAAGTTTGTGATCATGGACA 260
Query 244 ACCCTGTGACAATGGACCAGAAC-ATGCTCTCGGAACAGGTGGCTCGTGTTCAAGGCTTC 302
||||||||||||||||||||||| || || ||| ||| ||||||||||||||||||||||
Sbjct 261 ACCCTGTGACAATGGACCAGAACTAT-CTATCGAAACCGGTGGCTCGTGTTCAAGGCTTC 319
Query 303 TTCTTCTATCACGGTAAGACGAAATACGACACTTGGCTCTCTTGGTCAGTAGTATTCAAT 362
||||| || ||||||||| | |||||||| |||||||| ||||||||||||| |||||||
Sbjct 320 TTCTTTTACCACGGTAAGGCAAAATACGATACTTGGCTTTCTTGGTCAGTAGCATTCAAT 379
Query 363 TCAACACAACACAAGGGGGCATTGAACATAATGGGTGAAAA-CGCGTTTATGGAGCCGAC 421
|||||||||||||||||| |||||||||||||||||||||| | ||||||||||||||||
Sbjct 380 TCAACACAACACAAGGGGACATTGAACATAATGGGTGAAAATC-CGTTTATGGAGCCGAC 438
Query 422 AAGAGACCTACCGGTCGTTGGTGGGACTGGTGATTTCGTCATGACTCGTGGGATCGCTAC 481
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 439 CAGAGACCTACAGGTCGTTGGTGGGACTGGTGATTTCGTCATGACTCGTGGGATCGCGAT 498
Query 482 GTTCATGACTGATCTCGTTGAAGGCAGTAAGTATTTCCGTGTCAAAATGGATATTAAACT 541
|||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 499 GTTCATGACTGATCTCGTTGAAGGCAATAAGTATTTCCGTATCAAAATGGATATTAAACT 558
Query 542 CTATGAATGTTACTATTAGAGTTA 565
||||||||||||||||||||||||
Sbjct 559 CTATGAATGTTACTATTAGAGTTA 582
> Ahg942957 jgi|Araly1|942957|scaffold_603501.1
Length=207
Score = 198 bits (107), Expect = 4e-50
Identities = 181/215 (84%), Gaps = 11/215 (5%)
Strand=Plus/Plus
Query 372 CACAAGGGGGCATTGAACATAATGGGTG-AAAACGCGTTTATGGAGCCGACAAGAGACCT 430
||||| ||| |||||| |||||||| || || | || | ||||||||||| ||||||||
Sbjct 1 CACAAAGGGACATTGACCATAATGGATGCGAATC-CGATAATGGAGCCGACTAGAGACCT 59
Query 431 AC-CGGTCGTTGGTGGGACTGGTGATTTCGTCATGACTCGTGGGATCGCTACGTT-CATG 488
| | ||||||||||||||||||| ||| ||||||||| ||||||||||||||| || |
Sbjct 60 -CTCCATCGTTGGTGGGACTGGTGACTTCCTCATGACTCATGGGATCGCTACGTTACA-G 117
Query 489 ACTGATCTCGTTGAAGGCAGTAAGTATTTCCGTGTCAAAATGGATATTAAACTCTATGAA 548
|| || ||| || |||||||| |||||||| || || |||||||||||||||||||||||
Sbjct 118 ACCGAACTCATTCAAGGCAGT-AGTATTTCTGTTTCGAAATGGATATTAAACTCTATGAA 176
Query 549 TGTTACTATTAGAGTTACTAATACATGTCTTGGgt 583
||||| |||| | ||| ||||| |||||||||||
Sbjct 177 TGTTA--ATTA-A-TTATTAATATATGTCTTGGGT 207
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25999829394
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5