BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G11190.1 Length=707 Score E Sequences producing significant alignments: (Bits) Value Ahg942958 jgi|Araly1|942958|scaffold_603502.1 804 0.0 Ahg942957 jgi|Araly1|942957|scaffold_603501.1 198 4e-50 > Ahg942958 jgi|Araly1|942958|scaffold_603502.1 Length=597 Score = 804 bits (435), Expect = 0.0 Identities = 522/564 (93%), Gaps = 6/564 (1%) Strand=Plus/Plus Query 5 AATGGCAAACCAAATCTACATAATCTCCTTGATCTTCTTGTCTGTGTTACTTTATCAATC 64 ||||||||||||||||||| || |||||||||||||||| ||||| |||||||| || || Sbjct 22 AATGGCAAACCAAATCTACTTATTCTCCTTGATCTTCTTCTCTGTTTTACTTTACCAGTC 81 Query 65 CACTACCGTCTTATCTTTCCGACAACCATTCA-ACCTAGCGAAACCATGCAAGCGTTTCG 123 ||||||| |||||||||||| | || |||| | ||||||||||||||||||||||||||| Sbjct 82 CACTACCATCTTATCTTTCCAAAAATCATT-AGACCTAGCGAAACCATGCAAGCGTTTCG 140 Query 124 TCTTCTACCTCCATAATGTTGCCTACGACGGTGATAACACGGATAATGCTACATCAGCAG 183 ||||| |||||||||||||||||||||| |||||||||| ||||||||| || ||||||| Sbjct 141 TCTTCCACCTCCATAATGTTGCCTACGATGGTGATAACATGGATAATGCCACGTCAGCAG 200 Query 184 CAATTGTTAACCCTTTAGGTCTAGGAGACTTCAGTTTTGGGAAGTTTGTGATCATGGACA 243 ||||||| ||||| ||||| ||||||||||||| |||||||||||||||||||||||||| Sbjct 201 CAATTGTGAACCCATTAGGACTAGGAGACTTCAATTTTGGGAAGTTTGTGATCATGGACA 260 Query 244 ACCCTGTGACAATGGACCAGAAC-ATGCTCTCGGAACAGGTGGCTCGTGTTCAAGGCTTC 302 ||||||||||||||||||||||| || || ||| ||| |||||||||||||||||||||| Sbjct 261 ACCCTGTGACAATGGACCAGAACTAT-CTATCGAAACCGGTGGCTCGTGTTCAAGGCTTC 319 Query 303 TTCTTCTATCACGGTAAGACGAAATACGACACTTGGCTCTCTTGGTCAGTAGTATTCAAT 362 ||||| || ||||||||| | |||||||| |||||||| ||||||||||||| ||||||| Sbjct 320 TTCTTTTACCACGGTAAGGCAAAATACGATACTTGGCTTTCTTGGTCAGTAGCATTCAAT 379 Query 363 TCAACACAACACAAGGGGGCATTGAACATAATGGGTGAAAA-CGCGTTTATGGAGCCGAC 421 |||||||||||||||||| |||||||||||||||||||||| | |||||||||||||||| Sbjct 380 TCAACACAACACAAGGGGACATTGAACATAATGGGTGAAAATC-CGTTTATGGAGCCGAC 438 Query 422 AAGAGACCTACCGGTCGTTGGTGGGACTGGTGATTTCGTCATGACTCGTGGGATCGCTAC 481 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 439 CAGAGACCTACAGGTCGTTGGTGGGACTGGTGATTTCGTCATGACTCGTGGGATCGCGAT 498 Query 482 GTTCATGACTGATCTCGTTGAAGGCAGTAAGTATTTCCGTGTCAAAATGGATATTAAACT 541 |||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| Sbjct 499 GTTCATGACTGATCTCGTTGAAGGCAATAAGTATTTCCGTATCAAAATGGATATTAAACT 558 Query 542 CTATGAATGTTACTATTAGAGTTA 565 |||||||||||||||||||||||| Sbjct 559 CTATGAATGTTACTATTAGAGTTA 582 > Ahg942957 jgi|Araly1|942957|scaffold_603501.1 Length=207 Score = 198 bits (107), Expect = 4e-50 Identities = 181/215 (84%), Gaps = 11/215 (5%) Strand=Plus/Plus Query 372 CACAAGGGGGCATTGAACATAATGGGTG-AAAACGCGTTTATGGAGCCGACAAGAGACCT 430 ||||| ||| |||||| |||||||| || || | || | ||||||||||| |||||||| Sbjct 1 CACAAAGGGACATTGACCATAATGGATGCGAATC-CGATAATGGAGCCGACTAGAGACCT 59 Query 431 AC-CGGTCGTTGGTGGGACTGGTGATTTCGTCATGACTCGTGGGATCGCTACGTT-CATG 488 | | ||||||||||||||||||| ||| ||||||||| ||||||||||||||| || | Sbjct 60 -CTCCATCGTTGGTGGGACTGGTGACTTCCTCATGACTCATGGGATCGCTACGTTACA-G 117 Query 489 ACTGATCTCGTTGAAGGCAGTAAGTATTTCCGTGTCAAAATGGATATTAAACTCTATGAA 548 || || ||| || |||||||| |||||||| || || ||||||||||||||||||||||| Sbjct 118 ACCGAACTCATTCAAGGCAGT-AGTATTTCTGTTTCGAAATGGATATTAAACTCTATGAA 176 Query 549 TGTTACTATTAGAGTTACTAATACATGTCTTGGgt 583 ||||| |||| | ||| ||||| ||||||||||| Sbjct 177 TGTTA--ATTA-A-TTATTAATATATGTCTTGGGT 207 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 25999829394 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5