BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G11210.1
Length=555
Score E
Sequences producing significant alignments: (Bits) Value
Ahg942958 jgi|Araly1|942958|scaffold_603502.1 660 0.0
Ahg489955 jgi|Araly1|489955|fgenesh2_kg.6__3089__AT4G11180.1 375 1e-103
Ahg942959 jgi|Araly1|942959|scaffold_603503.1 305 2e-82
> Ahg942958 jgi|Araly1|942958|scaffold_603502.1
Length=597
Score = 660 bits (357), Expect = 0.0
Identities = 491/557 (88%), Gaps = 4/557 (1%)
Strand=Plus/Plus
Query 1 ATGGCAAACCAAATCTACTTATTCTCCTTGATCTGCTTGTCTGTTTTACTTTGCCAATC- 59
|||||||||||||||||||||||||||||||||| ||| ||||||||||||| ||| ||
Sbjct 23 ATGGCAAACCAAATCTACTTATTCTCCTTGATCTTCTTCTCTGTTTTACTTTACCAGTCC 82
Query 60 ATATACGGTCTCATCTTTCCAAAAATCACTAGACCTAGCGAAACCATGCAAGCGTTTCGT 119
| ||| ||| |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 83 AC-TACCATCTTATCTTTCCAAAAATCATTAGACCTAGCGAAACCATGCAAGCGTTTCGT 141
Query 120 CCTCCACCTCCATGACATTGCGTACGATGGTGATAACGCGGCTAATGCAACGTCAGCAGC 179
| ||||||||||| | |||| ||||||||||||||| || |||||| |||||||||||
Sbjct 142 CTTCCACCTCCATAATGTTGCCTACGATGGTGATAACATGGATAATGCCACGTCAGCAGC 201
Query 180 AATTGTGAATCCTTTAGGACTAGGAGACTTCAGTTTTGGGAAGTTTGTGATTATGGACGA 239
||||||||| || ||||||||||||||||||| |||||||||||||||||| |||||| |
Sbjct 202 AATTGTGAACCCATTAGGACTAGGAGACTTCAATTTTGGGAAGTTTGTGATCATGGACAA 261
Query 240 CCCTGTGACAATGGACCAGAACTATCTCTCGAAACCCGTGGCTCGTGTTCAAGGCTTCTT 299
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 262 CCCTGTGACAATGGACCAGAACTATCTATCGAAACCGGTGGCTCGTGTTCAAGGCTTCTT 321
Query 300 CTGCTACCACGGTAAGGCAACATACGACGCTTGGATCGCTTGGACAGTGGTATTCAACTC 359
|| |||||||||||||||| |||||| ||||| | ||||| |||| | |||||| ||
Sbjct 322 CTTTTACCACGGTAAGGCAAAATACGATACTTGGCTTTCTTGGTCAGTAGCATTCAATTC 381
Query 360 AACACAACACAAAGGGG-CATTCACCATAATGGGTGAAAATCCGTTTATGGAGCCGACTA 418
|||||||||||| |||| |||| | ||||||||||||||||||||||||||||||||| |
Sbjct 382 AACACAACACAA-GGGGACATTGAACATAATGGGTGAAAATCCGTTTATGGAGCCGACCA 440
Query 419 GAGACCTACCGATCGTTGGTGGGACTGGTGACTTCATCATGACTCGAGGGATCGCTACGT 478
||||||||| | ||||||||||||||||||| ||| |||||||||| |||||||| | ||
Sbjct 441 GAGACCTACAGGTCGTTGGTGGGACTGGTGATTTCGTCATGACTCGTGGGATCGCGATGT 500
Query 479 TAACGACCGATCACATTGACGGCAGTAAGTATTTCCGCGTCAAGCTTGATATTAAGCTCT 538
| | ||| |||| | |||| |||| |||||||||||| |||| | |||||||| ||||
Sbjct 501 TCATGACTGATCTCGTTGAAGGCAATAAGTATTTCCGTATCAAAATGGATATTAAACTCT 560
Query 539 ACGAATGTTACCATTAG 555
| ||||||||| |||||
Sbjct 561 ATGAATGTTACTATTAG 577
> Ahg489955 jgi|Araly1|489955|fgenesh2_kg.6__3089__AT4G11180.1
Length=674
Score = 375 bits (203), Expect = 1e-103
Identities = 403/496 (81%), Gaps = 27/496 (5%)
Strand=Plus/Plus
Query 32 TCTGCTTGTCTGTTTTACTT-TGCCAAT-CATATACGGTCTCAT-CTTTCCAAAAATCAC 88
||| ||| || ||||||||| | ||||| || ||| ||||||| | ||| ||| |||
Sbjct 51 TCTTCTTATCCGTTTTACTTCT-CCAATCCA-GTACTGTCTCATAC-GTCCGAAAGTCAT 107
Query 89 TAGACCT-AGCGAAACCATGCAAGCGTTTCGTCCTCCACCTCCATGACATTGCGTACGAT 147
| ||||| | | |||||||||| || |||||| || |||||||| |||| || ||||||
Sbjct 108 TCGACCTAAAC-AAACCATGCAGGCATTTCGTACTTTACCTCCATAACATCGCCTACGAT 166
Query 148 GGTGATAACGCGGCTAATGCAAC-GTCAGCAGCAATTGTGAATCCTTTAGGACTAGGAGA 206
| |||||||||||||||||| || | ||||| |||| ||||| ||||| |||||||| ||
Sbjct 167 GATGATAACGCGGCTAATGCCACAG-CAGCAACAATCGTGAACCCTTTGGGACTAGGGGA 225
Query 207 CTT-CAGTTTTGGGAAGTTTGTGATTATG-GACGACCCTGTGACAATGGACCAGAACTAT 264
|| ||||| |||| | | | | |||| ||||||||||| ||||||||||||||||||
Sbjct 226 -TTATAGTTTCGGGAGGGTAATTA-TATGTGACGACCCTGTAACAATGGACCAGAACTAT 283
Query 265 CTCTCGAAACCCGTGGCTCGTGTTCAAGGCTTCTTCTGCTACCACG-GTAAGGC-AACAT 322
||||||||||| |||||||||| ||||| |||| || |||| || | ||| | || |
Sbjct 284 CTCTCGAAACCAGTGGCTCGTGCCCAAGGATTCTACTTCTACAACAAG-AAGACGAATTT 342
Query 323 ACGACGCTTGGATCGCTTGGACAGTGGTATTCAACTCAACACAA-CACAAAGGGGCATTC 381
| || ||||| ||||||||||| |||||||||| || ||| || ||||||||| ||||
Sbjct 343 -CAACACTTGGGTCGCTTGGACATTGGTATTCAATTCGACA-AAGCACAAAGGGACATTT 400
Query 382 ACCATAATGGGTGAAAATCCGT-T--TATGGAGCCGACTAGAGACCTACCGATCGTTGGT 438
|||||||||| || |||||| | | |||||||||||| ||||||||| ||||||| |||
Sbjct 401 ACCATAATGGATGCAAATCCTTATGGTATGGAGCCGACCAGAGACCTAGCGATCGTAGGT 460
Query 439 GGGACTGGTGACTTCATCATGACTCGAGGGATCGCTACGTT-AACGACCGATCACAT-TG 496
||||||||||||||| |||||||||| |||||||||||||| || |||| | | | | |
Sbjct 461 GGGACTGGTGACTTCCTCATGACTCGTGGGATCGCTACGTTGAA-GACCAAACTC-TCTC 518
Query 497 ACGGCAGTAAGTATTT 512
| ||||||||||||||
Sbjct 519 AAGGCAGTAAGTATTT 534
> Ahg942959 jgi|Araly1|942959|scaffold_603503.1
Length=931
Score = 305 bits (165), Expect = 2e-82
Identities = 190/202 (94%), Gaps = 1/202 (0%)
Strand=Plus/Plus
Query 107 GCAAGCGTTTCGTCCTCCACCTCCATGACATTGCGTACGATGGTGATAACGCGGCTAATG 166
||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 571 GCAAGCGTTTCATCCTCCACCTCCATGACATTGCCTACGATGGTGATAACGCGGCTAATG 630
Query 167 CAACGTCAGCAGCAATTGTGAATCCTTTAGGACTAGGAGACTTCAGTTTTGGGAAGTTTG 226
| ||||| |||||||||||||| ||||||||||||||||| ||||||||||| |||||||
Sbjct 631 CCACGTCGGCAGCAATTGTGAACCCTTTAGGACTAGGAGAATTCAGTTTTGGAAAGTTTG 690
Query 227 TGATTATGGACGACCCTGTGACAATGGACCAGAACTATCTCTCGAAACCCGTGGCTCGTG 286
|||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 691 TGATTATGGACGACCCTGTGACAATGGACCAGAACTATCTTTCGAAACTGGTGGCTCGTG 750
Query 287 TTCAAGGCTTCTTCTGCTACCA 308
||||||||||||||| |||||
Sbjct 751 TTCAAGGCTTCTTCTT-TACCA 771
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20260617759
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5