BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G11220.1
Length=1298
Score E
Sequences producing significant alignments: (Bits) Value
Ahg942960 jgi|Araly1|942960|scaffold_603504.1 1219 0.0
Ahg945747 jgi|Araly1|945747|scaffold_701976.1 680 0.0
> Ahg942960 jgi|Araly1|942960|scaffold_603504.1
Length=856
Score = 1219 bits (660), Expect = 0.0
Identities = 780/838 (93%), Gaps = 8/838 (1%)
Strand=Plus/Plus
Query 208 ATCGGAAACAATGGCGGATGAACATAAGCATGAAGAATCTTCACCTAATTTGGATCCAGC 267
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 11 ATCGGTAACAATGGCGGATGAACATAAGCATGAAGAATCTTCACCTAATTTGGATCCAGC 70
Query 268 AGTGGAGGTTGTAGAGAGGGAATCGTTGATGGAGAAGTTATCGGAGAAGATCCATCACAA 327
||||| |||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 71 GGTGGAAGTTGTAGAGAGGGAATCGTTGATGGAGAAGATATCGGAGAAGATTCATCACAA 130
Query 328 AGGTGATTCGTCGTCTTCATCATCATCAGATGACGA--A-AACGAGAAGAAGTCTTCGTC 384
||||||||| ||||| || || ||||||||||| || | || || ||||||||||| ||
Sbjct 131 AGGTGATTCTTCGTCGTCGTCTTCATCAGATGATGATGAGAAAGAAAAGAAGTCTTC-TC 189
Query 385 ATCGTCTCCAAAGTCTTTGAAATCGAAGGTTTATCGTTTGTTCGGAAGAGAGAGACCTGT 444
||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 190 --CGTCTCCGAAGTCTTTGAAATCGAAGGTTTATCGTTTGTTTGGTAGAGAGAGACCTGT 247
Query 445 TCATAAGGTTCTCGGCGGCGGAAAACCGGCAGATATATTTATGTGGAAGGACAAGAAAAT 504
|||||| |||||||||| ||||||||||| |||||||||||||||||| ||||||| ||
Sbjct 248 GCATAAGATTCTCGGCGGTGGAAAACCGGCGGATATATTTATGTGGAAGAACAAGAAGAT 307
Query 505 GTCAGGAGGTGTATTTGGCGGTGCTACAGTGGCATGGGTGCTATTTGAATTGATGGAGTA 564
|||||| ||||||||||| ||||||||||| || |||||| |||||||||||||||||||
Sbjct 308 GTCAGGTGGTGTATTTGGTGGTGCTACAGTAGCGTGGGTGTTATTTGAATTGATGGAGTA 367
Query 565 TCATCTTCTTACTCTGTTATGTCACGTTATGATCGTTGCTCTTGCTGTGTTGTTTCTATG 624
|||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct 368 TCATCTTCTTACTCTGCTATGTCACGTTATGATCGTTGCGCTTGCTGTGTTGTTTCTATG 427
Query 625 GTCTAATGCCACTATGTTCATTCACAAGTCTCCACCAAAGATTCCTGAAGTTCATATCCC 684
||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 428 GTCTAATGCCACTATGTTCATTCACAAGTCTCCACCAAAGATTCCCCAAGTACATATCCC 487
Query 685 TGAAGAACCTCTTCTTCAGCTTGCTTCGGGTCTTAGAATCGAAATCAACCGTGGGATCTC 744
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 488 TGAAGAACCTTTTCTTCAGCTTGCTTCGGGTCTTAGAATCGAAATCAACCGTGGGTTCTC 547
Query 745 TTCTCTTCGTGAGATTGCGTCGGGGAGGGATATCAAGAAGTTCCTCTCTGCTATTGCCGG 804
|||||||||||||||||| || || |||||| ||||||| ||||||||||||||||||||
Sbjct 548 TTCTCTTCGTGAGATTGCATCTGGAAGGGATCTCAAGAAATTCCTCTCTGCTATTGCCGG 607
Query 805 ATTGTGGGTTCTATC-GATCTTGGGCGGCTGCTATAGTTTCTTGACATTGGCATACATAG 863
|||||||||| |||| | |||||||||| |||| | ||||||||||||||||||||||||
Sbjct 608 ATTGTGGGTTTTATCAG-TCTTGGGCGGATGCTGTTGTTTCTTGACATTGGCATACATAG 666
Query 864 CTCTGGTTCTGCTCTTCACTGTTCCTCTTTTCTACGACAAGTACGAAGACAAAGTAGACT 923
||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 667 CTCTGGTTCTGCTCTTCACTGTTCCTCTTCTCTACGACAAATACGAAGACAAAGTAGACG 726
Query 924 CATACGGTGAGAAAGCAATGGCTGAGTTGAAGAAGCAATACGCTGTGTTGGACGCAAAGG 983
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 727 CATACGGTGAGAAAGCAATGGCGGAGTTGAAGAAGCAATACGCTGTGTTCGACGCAAAGG 786
Query 984 TATTCAGCAAAATCCCAAGAGGACCGTTGAAAGACAAGAAGAAGGATTAGtttttttt 1041
|||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 787 TATTGAGCAAAATCCCAAGGGGACCTTTGAAAGACAAGAAGAAGGATTAGTTTTTTTT 844
> Ahg945747 jgi|Araly1|945747|scaffold_701976.1
Length=860
Score = 680 bits (368), Expect = 0.0
Identities = 699/852 (82%), Gaps = 49/852 (6%)
Strand=Plus/Plus
Query 212 GAAACAATGGCGGATGAACATAAGCATGAAGAATCT-TCA-C-CTAATTTGGATCCAGCA 268
||||| |||||||| ||||||||||||||||||||| | | | || | || |||||
Sbjct 15 GAAACGATGGCGGAAGAACATAAGCATGAAGAATCTGTGATCGCT--CCT-GAGCCAGCT 71
Query 269 GTGGAGGTTGTAGAGAGGGAATCGTTGATGGAGAAGTTATCGGAGAAGATCCATCACAAA 328
|| |||||||| ||||| ||| | |||| ||| ||||||||||||||||||||
Sbjct 72 GTTGAGGTTGTGGAGAGAGAA-C-----TGGACAAGATATCGGAGAAGATCCATCACGGT 125
Query 329 GGTGA---TTCGTCGTCTTCATCATCATCAGATGACGAAAAC--G-AGAAGAAGTCT--- 379
||||| ||| ||||| || ||||| || ||||| ||| || | |||||||| ||
Sbjct 126 GGTGATTCTTCTTCGTCATCTTCATCTTCTGATGATGAAGACGAGAAGAAGAAGACTAAG 185
Query 380 TCGTCATCGTCTCCAAAGTCTTTGAAATCGAAGGTTTATCGTTTGTTCGGAAGAGAG-AG 438
| | || ||||| |||| |||||||||| ||||| || |||||||| |||||| ||
Sbjct 186 AAGCCGTCTTCTCCTTCGTCTATGAAATCGAAAGTTTACCGCTTGTTCGGTAGAGAGCAG 245
Query 439 ACCTGTTCATAAGGTTCTCGGCGGCGGAAAACCGGCAGATATATTTATGTGGAAGGACAA 498
||||||||||||||||| ||||| ||||| ||||| |||||||| ||||||||| ||||
Sbjct 246 -CCTGTTCATAAGGTTCTTGGCGGTGGAAAGCCGGCTGATATATTCATGTGGAAGAACAA 304
Query 499 GAAAATGTCAGGAGGTGTATTTGGCGGTGCTACAG-TGGCATGGG-TGCTATTTGAATTG 556
||| ||||| || |||||| |||| |||||||||| | || |||| || | |||||||||
Sbjct 305 GAAGATGTCTGGTGGTGTACTTGGTGGTGCTACAGCT-GCTTGGGTTG-TGTTTGAATTG 362
Query 557 ATGGAGTATCATCTTCTTACTCTG-TTATGTCACGTTATGATCGTTGCTCTTGCTGTGTT 615
|||||||| |||||||| |||||| || || ||||| ||||| |||| |||||||||| |
Sbjct 363 ATGGAGTACCATCTTCTCACTCTGCTT-TGCCACGTGATGATTGTTGTTCTTGCTGTGCT 421
Query 616 GTTTCTATGGTCTAATGCCACTATGTTCATTCACAAGTCTCCACCAAAGATTCCTGAAGT 675
|||| | |||||||||||||| ||||||||| ||||||| ||||||||||||||||||||
Sbjct 422 GTTTTTGTGGTCTAATGCCACCATGTTCATTAACAAGTCCCCACCAAAGATTCCTGAAGT 481
Query 676 TCATATCCCTGAAGAACCTCTTCTTCAGCTTGCTTC-GGGTCTTAGAATCGAAATCAACC 734
||||||||||||||| ||| ||||||||||||| || ||| || |||||||| |||||||
Sbjct 482 TCATATCCCTGAAGAGCCTATTCTTCAGCTTGCGTCTGGG-CTCAGAATCGAGATCAACC 540
Query 735 GTGGGAT-CTCTTCTCTTCGTGAGATTGCGTCGGGGAGGGATATCAAGAAGTTCCTC-TC 792
|||| || ||||||||||||||| ||||| || || |||||| ||||||| |||||| |
Sbjct 541 GTGG-ATTCTCTTCTCTTCGTGAAATTGCATCTGGAAGGGATCTCAAGAAATTCCTCAT- 598
Query 793 TGCTATTGCCGGATTGTGGGTTCTATCGATCTTGGGCGGCTGCTAT-AGTTTCTTGACAT 851
|||||||||||| |||||||||||||| |||||||| || |||| | | ||||||||||
Sbjct 599 TGCTATTGCCGGTTTGTGGGTTCTATCAATCTTGGGTGGTTGCT-TCAACTTCTTGACAT 657
Query 852 TGGCATACATAGCTCTGGT-TCTGCTCTTCACTGTTCCTCTTTTCTACGACAAGTACGAA 910
|||||||||||||||| || | |||||||||| ||||||||| ||| |||||||| |||
Sbjct 658 TGGCATACATAGCTCTTGTGT-TGCTCTTCACGGTTCCTCTTGCCTATGACAAGTATGAA 716
Query 911 GACAAAGTAGACTCAT-ACGGTGAGAAAGCAATGG-CTGAGTTGAAGAAGCAATACGCTG 968
|||||||| ||| ||| | ||||||||||| || | ||| | || ||||| || || |
Sbjct 717 GACAAAGTCGACCCATTA-GGTGAGAAAGCGGTGATC-GAGCTCAAAAAGCAGTATGCAG 774
Query 969 TGTTGGACGCA-AAGGTATTCAGCAAAATCCCAA-GAGGACCGTTGAAAGA-CAAGAAGA 1025
||||||| | | ||||| || ||||| |||||| | || || ||||| || ||||||||
Sbjct 775 TGTTGGATG-AGAAGGTGTTGAGCAAGATCCCACTG-GGCCCATTGAA-GAACAAGAAGA 831
Query 1026 AGGATTAGtttt 1037
| |||||| |||
Sbjct 832 AAGATTAGGTTT 843
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48530473341
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5