BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G11230.1
Length=3130
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489958 jgi|Araly1|489958|fgenesh2_kg.6__3092__AT4G11230.1 3644 0.0
> Ahg489958 jgi|Araly1|489958|fgenesh2_kg.6__3092__AT4G11230.1
Length=2974
Score = 3644 bits (1973), Expect = 0.0
Identities = 2414/2619 (92%), Gaps = 61/2619 (2%)
Strand=Plus/Plus
Query 377 TATTCGTCTCGGTCTGCACCGGAACCGGTGGTTCCACACA-G-AGGCGAAATTACCGATT 434
||||||||||||||||||||||| ||||||||||| | | | || || |||| |||
Sbjct 360 TATTCGTCTCGGTCTGCACCGGAGCCGGTGGTTCC-TA-ATGTAGTAGATTTTACGGATC 417
Query 435 CGGTTAATCTCCCTCGAGCTTTATCTCAGCGACCAACTAGACCTAATCGGGATGGATCGG 494
| | | |||| ||| ||||| | || ||| ||| | | | || || |||||
Sbjct 418 CTGCTGTTCTCTGTCGCTCTTTAACACAACGATTAAC-A-A---AGTC-TAATCGATCGT 471
Query 495 GTACAGAGAGAGCGATTCATGGTTTGAAATTCATAAGCAGCAAAGAAAATGGAATCGTTG 554
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |
Sbjct 472 GTACAGAGAGAGCGATTCATGGTTTGAAATTCATAAGCAGCAAAGACAATCGAATCGCTA 531
Query 555 ATTGGA-ACGATGTTCAAAACAATTTCGCTCATCTTTCTAAAGATGGTTATCTTT-TCAA 612
|||||| | ||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 532 ATTGGAGA-GATGTTCAAAACAATTTCGCTAATCTTTCTAAAGATGGTTATCTTTGTC-G 589
Query 613 AAGTGATTTTGCTCATTGCATAGGTTTGGAGAATGAAAATTCCAAAGAGTTTGCAGACGA 672
||||||||||||| |||||||||||||||||||||||||||| ||||| || ||||| ||
Sbjct 590 AAGTGATTTTGCTAATTGCATAGGTTTGGAGAATGAAAATTCGAAAGAATTCGCAGATGA 649
Query 673 GTTGTTCGACGCATTGTGTAGGAGAAGAAGAATAATGGTTGATAAGATCAATCTTCAAGA 732
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 650 GTTGTTCGACGCAATGTGTAGGAGAAGAAGATTAATGGTTGATAAGATCAATCTTCAAGA 709
Query 733 ATTATACGAGTTTTGGTACCAAATTACAGACGAAAGCTTCGATTCTCGTCTTCAAATCTT 792
| |||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 710 ACTATATGAGTTTTGGTACCAAATTACTGACGAAAGCTTCGATTCTCGTCTCCAAATCTT 769
Query 793 CTTCAACATGGTTAAAAATGGAGATGGTAGAATCACAGAGAATGAAGTAAAAGAGATTAT 852
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 770 CTTCGACATGGTTAAAAATGGAGATGGTCGAATCACAGAGAATGAAGTAAAAGAGATCAT 829
Query 853 TATACTAAGTGCATCGGCAAATAATCTATCGAGGTTGCGAGAACGAGCAGAGGAATATGC 912
||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||
Sbjct 830 TATACTAAGTGCATCAGCAAATAATCTATTGAGGTTAAGAGAACGAGCAGAGGAATATGC 889
Query 913 CGCACTGATCATGGAAGAACTTGCACCAGATGGACTCTATTCTCAGTACATAGAGTTAAA 972
|||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 890 AGCACTGATCATGGAAGAACTTGCACCGGATGGGCTCTATTCTCAGTACATAGAGTTAAA 949
Query 973 GGACCTAGAGATACTGCTACTAGAGAAGGACATATCTCATAGTTACAGCCTACCGTTCAG 1032
|||||||||||| || |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 950 GGACCTAGAGATGCTACTACTAGAGAAGGACATATCTCATAGTTACAGCCAACCGTTCAG 1009
Query 1033 CCAGACGAGCCGAGCCTTAAGCCAGAACCTAAAGGATAGAAGATGGAGAATGAGCAGAAA 1092
||||||||||||||||||||||| ||||||||||||| ||||||| |||| || || ||
Sbjct 1010 TCAGACGAGCCGAGCCTTAAGCCAAAACCTAAAGGATACAAGATGGGGAATAAGTAGGAA 1069
Query 1093 CTTGCTTTACTCTTTGCAAGATAATTGGAAGAGGATTTGGGTTTTGACATTGTGGTTTGT 1152
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 1070 CTTGCTTTACTCTTTGCAAGACAATTGGAAGAGGATTTGGGTTTTGACATTGTGGTTAGT 1129
Query 1153 GATCATGGCCTGGTTATTTATGTGGAAATGCTATCAGTACAAACACAAAGACGCATTCCA 1212
|||||||| |||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1130 GATCATGGGCTGGTTGTTTATGTGGAAATGCTATCAGTACAAACGCAAAGACGCATTCCA 1189
Query 1213 TGTAATGGGTTACTGCCTTGTCATGGCAAAAGGCGCAGCTGAGACACTGAAATTCAACAT 1272
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||
Sbjct 1190 TGTAATGGGTTACTGCCTTGTCATGGCGAAAGGTGCAGCTGAGACACTGAAATTCAATAT 1249
Query 1273 GGCTCTTATTCTTTTGCCGGTCTGTAGAAATACCATCACCTATCTCAGATCCACCGCTTT 1332
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1250 GGCTCTTATCCTTTTGCCGGTTTGTAGAAATACCATCACCTATCTCAGATCCACCGCTTT 1309
Query 1333 GTCCCACTCAGTGCCTTTCGATGACTGCATTAATTTTCACAAGACGATCTCTGTAGCAAT 1392
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1310 GTGCCACTCAGTGCCTTTCGATGACTGCATTAATTTTCACAAGACGATCTCTGTAGCAAT 1369
Query 1393 CATTAGTGCAATGCTTCTTCATGCAACCAGCCACCTCGCCTGTGACTTCCCAAGGATTCT 1452
||||| ||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||
Sbjct 1370 CATTATTGCAATGCTTCTTCATGCATCCAGCCACCTCGCTTGTGACTTCCCGAGGATTCT 1429
Query 1453 AGCATCTACTGATACAGATTACAAAAGATACTTGGTTAAGTACTTTGGTGTGACCAGACC 1512
| |||||||||| || ||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 1430 AACATCTACTGAGACTGATTACAAAAGATACTTGGTTAAGTACTTTGGTATTACCAGACC 1489
Query 1513 CACATACTTTGGTTTGGTGAATACTCCTGTGGGAATCACTGGAATTATAATGGTTGCTTT 1572
||||||||||| |||||||||| |||||| ||||||||||| ||||||||||||||||
Sbjct 1490 CACATACTTTGACTTGGTGAATAGTCCTGTAGGAATCACTGGTTTTATAATGGTTGCTTT 1549
Query 1573 TATGTTAATTGCATTCACATTAGCCAGTAGAAGATGCAGGCGGAA-CTTAACTAAGTTGC 1631
|||| |||||||||||| |||||||||| |||||||||||||||| ||| ||||||||||
Sbjct 1550 TATGGTAATTGCATTCATATTAGCCAGTCGAAGATGCAGGCGGAACCTT-ACTAAGTTGC 1608
Query 1632 CGAAGCCATTTGACAAACTAACCGGATATAATGCCTTCTGGTATTCACATCACTTACTTC 1691
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1609 CAAAGCCATTTGACAAACTAACCGGATATAATGCCTTCTGGTATTCACATCACTTACTTC 1668
Query 1692 TAACTGTTTACGTCCTTTTAGTCATCCACGGTGTTTCCCTCTATCTCGAGCATAAATGGT 1751
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1669 TAACTGTTTACGTCCTTTTAGTCATCCACGGTGTTTCCCTCTATCTCGAGCATAAATGGT 1728
Query 1752 ACCGCAAAACGGTATGGATGTATCTTGCTGTACCAGTTTTACTCTATGTTGGTGAGAGGA 1811
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 1729 ACCGCAAAACGATATGGATGTATCTTGCTGTACCAGTTTTACTCTATATTGGTGAAAGGA 1788
Query 1812 TCTTTAGATTTTTCCGTTCCAGGCTTTACACAGTCGAAATCTGTAAGGTTGTAATTTATC 1871
|| |||||||||| ||||||||||||||||| || |||||||| ||||||||||||||||
Sbjct 1789 TCCTTAGATTTTTTCGTTCCAGGCTTTACACCGTTGAAATCTGCAAGGTTGTAATTTATC 1848
Query 1872 CCGGAAACGTTGTTGTGCTACGCATGTCTAAGCCTACATCATTTGATTACAAGAGTGGAC 1931
|||||||||||||||| ||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 1849 CCGGAAACGTTGTTGTACTACGCATGACTAAGCCTACATCATTTGATTACAAGAGCGGAC 1908
Query 1932 AATATGTATTTGTTCAGTGTCCAT-CAGTATCAAAATTTGAGTGGCATCCATTTTCTATT 1990
|||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||
Sbjct 1909 AATATGTATTTGTTCAGTGTCC-TGCAGTGTCAAAATTTGAGTGGCATCCATTTTCTATT 1967
Query 1991 ACTTCTTCCCCTGGAGATGATTATCTCAGCATTCACATTCGTCAGCGCGGTGATTGGACA 2050
|| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 1968 ACGTCTTCCCCTGGAGATGATTATCTCAGCATTCACATTCGCCAGCGTGGTGATTGGACA 2027
Query 2051 GAAGGGATTAAGAAGGCATTCTCAGTGGTATGTCATGCCCCTGAAGCTGGAAAAAGCGGA 2110
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 2028 GAAGGGATTAAGAAGGCATTTTCAGTGGTATGTCAAGCCCCTGAAGCTGGAAAAAGCGGA 2087
Query 2111 CTTCTCAGAGCAGATGTACCAAACCAAAGAAGTTTTCCAGAGCTGTTGATAGATGGACCT 2170
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2088 CTTCTCAGAGCAGACGGACCAAACCAAAGAAGTTTTCCAGAGCTGTTGATAGATGGACCT 2147
Query 2171 TATGGCGCTCCAGCGCAAGACCATTGGAAGTATGATGTGGTATTACTGGTTGGCCTTGGA 2230
|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 2148 TATGGCGCTCCAGCGCAAGACCATTGGAAGTATGATGTGGTACTACTCGTTGGCCTTGGA 2207
Query 2231 ATCGGCGCAACACCTTTCGTTAGCATTTTGAGAGATCTACTCAATAACATTATTAAGCAA 2290
|||||||||||||||||||||||||||||||||||||||||||| | |||| ||||||||
Sbjct 2208 ATCGGCGCAACACCTTTCGTTAGCATTTTGAGAGATCTACTCAACACCATTGTTAAGCAA 2267
Query 2291 CAGGAACAAGCTGAATGCATCTCAGGTAGTTGTAGTAACAGCAACATCTCGTCGGATCAC 2350
|| ||||||||||||||| ||||||||||||||||||||||||||||||| || ||||||
Sbjct 2268 CAAGAACAAGCTGAATGCCTCTCAGGTAGTTGTAGTAACAGCAACATCTCATCTGATCAC 2327
Query 2351 AGTTTCAGTTGCTTAAACTCAGAAGCTGCG-AGTCGGATTCCGCAAACTCAACGGAAGAC 2409
|||||||||||||||||||| |||||| || ||||||||||| |||||||||||||||||
Sbjct 2328 AGTTTCAGTTGCTTAAACTCGGAAGCT-CGGAGTCGGATTCCCCAAACTCAACGGAAGAC 2386
Query 2410 GCTGAATACCAAGAATGCTTACTTTTACTGGGTAACACGAGAACAAGGCTCGTTCGATTG 2469
| ||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2387 GTTGAATACTAAGAACGCTTACTTTTATTGGGTAACACGAGAACAAGGCTCGTTCGATTG 2446
Query 2470 GTTCAAAGAAATCATGAACGAGATTGCTGATTCAGATAGAAAGGGTGTTATTGAGATGCA 2529
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2447 GTTCAAAGATATCATGAACGAAATTGCTGATTCAGATAGAAAGGGTGTTATTGAGATGCA 2506
Query 2530 CAACTACTTGACTAGCGTCTACGAAGAAGGAGATACTCGATCCAATCTTCTCACTATGAT 2589
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2507 CAACTACTTGACTAGCGTCTACGAAGAAGGAGATACTCGATCCAATCTTCTCACCATGAT 2566
Query 2590 CCAAACGTTAAACCATGCCAAAAATGGCGTCGACATTTTTTCAGGAACCAAGGTAAGGAC 2649
||||||| ||||||| || ||||||||||| | | ||| | | |
Sbjct 2567 CCAAACGCTAAACCACGCTAAAAATGGCGT--A-A--------GGA-C-A---------C 2604
Query 2650 ACATTTTGGGAGGCCAAAATGGAAGAAAGTTTTATCAAAGATTAGCACCAAACATAGGAA 2709
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2605 A--TTTTGGGAGGCCAAAATGGAAGAAAGTTTTATCAAAGATTAGCACCAAACATAGGAA 2662
Query 2710 CGCAAGAATTGGAGTGTTCTATTGTGGAGTTCCAAGTTTGGGGAAGGAACTTTCAACACT 2769
|||||||||||||||||||||||||||||| || |||||||||||||||||||| |||||
Sbjct 2663 CGCAAGAATTGGAGTGTTCTATTGTGGAGTACCGAGTTTGGGGAAGGAACTTTCTACACT 2722
Query 2770 CTGCCATGAATTTAACCAGACGGGAATTACCAGGTTCGATTTCCACAAAGAACAGTTCTA 2829
|||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct 2723 CTGCCATGAATTTAACCAGACGGGAATTTCCAGGTTCGAGTTCCACAAAGAACAGTTCTA 2782
Query 2830 ACTGGTAAAAGGATTAATCCCCCACGATTATGGTTTTTTGAATGAATGAATCAATGTTCA 2889
||| || | |||||||||||||||||||| |||||||||||||||||||||
Sbjct 2783 ACT---AA-----T----CCCCCACGATTATGGTTTTT-GAATGAATGAATCAATGTTCA 2829
Query 2890 TGTTCGTTCTCGTATCCTACTTGTTGTGTTTTCTTTT-CGTTTTGTGTATCACAAATACC 2948
||||| | | |||||| |||||||||||||||||| |||||||||||||| || ||||
Sbjct 2830 TGTTCATA-TA-TATCCTTCTTGTTGTGTTTTCTTTTTCGTTTTGTGTATCATAA-TACC 2886
Query 2949 AACTTTTAACCATTTCATCTAGAGTAGGACTGTtaaaaa 2987
||||||||||||||||||||||| |||||||||||||||
Sbjct 2887 AACTTTTAACCATTTCATCTAGACTAGGACTGTTAAAAA 2925
Score = 189 bits (102), Expect = 1e-46
Identities = 180/214 (84%), Gaps = 20/214 (9%)
Strand=Plus/Plus
Query 3 AAATGTCAATGTCATTTTCCGGCGGGACTCACAACGATCGTTGGGGCTCCGATTT-AGCT 61
|||||||||||||||||||||||||||||||| ||||||||||||| |||||||| | ||
Sbjct 1 AAATGTCAATGTCATTTTCCGGCGGGACTCACGACGATCGTTGGGGTTCCGATTTGA-CT 59
Query 62 TCCGCCGGAGAATTCACCCAAAGCTTTCCATCCTTACCAGCAACATACTCACCCTCACcc 121
|||||||||||||| ||||||||||||||||| || |||||||| | | || |||||
Sbjct 60 TCCGCCGGAGAATTTACCCAAAGCTTTCCATCGTTTCCAGCAAC-T--T-AC--TCACC- 112
Query 122 tcctcctcctcctcctccGGCGAAGAGCTCCTAGAAGTAACAATCGAATTCCCAAGCGGC 181
| ||| | |||||||||||| |||||||||||||||||||||||||||||
Sbjct 113 T--TCCGAC---------GGCGAAGAGCTCGTAGAAGTAACAATCGAATTCCCAAGCGGC 161
Query 182 GTAATAATAAACATCGACTCCGTTACCGGAACCG 215
||| || |||||||||| || |||||| | ||||
Sbjct 162 GTACTATTAAACATCGAATCTGTTACCAGCACCG 195
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 118232120480
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5