BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G11230.1 Length=3130 Score E Sequences producing significant alignments: (Bits) Value Ahg489958 jgi|Araly1|489958|fgenesh2_kg.6__3092__AT4G11230.1 3644 0.0 > Ahg489958 jgi|Araly1|489958|fgenesh2_kg.6__3092__AT4G11230.1 Length=2974 Score = 3644 bits (1973), Expect = 0.0 Identities = 2414/2619 (92%), Gaps = 61/2619 (2%) Strand=Plus/Plus Query 377 TATTCGTCTCGGTCTGCACCGGAACCGGTGGTTCCACACA-G-AGGCGAAATTACCGATT 434 ||||||||||||||||||||||| ||||||||||| | | | || || |||| ||| Sbjct 360 TATTCGTCTCGGTCTGCACCGGAGCCGGTGGTTCC-TA-ATGTAGTAGATTTTACGGATC 417 Query 435 CGGTTAATCTCCCTCGAGCTTTATCTCAGCGACCAACTAGACCTAATCGGGATGGATCGG 494 | | | |||| ||| ||||| | || ||| ||| | | | || || ||||| Sbjct 418 CTGCTGTTCTCTGTCGCTCTTTAACACAACGATTAAC-A-A---AGTC-TAATCGATCGT 471 Query 495 GTACAGAGAGAGCGATTCATGGTTTGAAATTCATAAGCAGCAAAGAAAATGGAATCGTTG 554 |||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| | Sbjct 472 GTACAGAGAGAGCGATTCATGGTTTGAAATTCATAAGCAGCAAAGACAATCGAATCGCTA 531 Query 555 ATTGGA-ACGATGTTCAAAACAATTTCGCTCATCTTTCTAAAGATGGTTATCTTT-TCAA 612 |||||| | ||||||||||||||||||||| |||||||||||||||||||||||| || Sbjct 532 ATTGGAGA-GATGTTCAAAACAATTTCGCTAATCTTTCTAAAGATGGTTATCTTTGTC-G 589 Query 613 AAGTGATTTTGCTCATTGCATAGGTTTGGAGAATGAAAATTCCAAAGAGTTTGCAGACGA 672 ||||||||||||| |||||||||||||||||||||||||||| ||||| || ||||| || Sbjct 590 AAGTGATTTTGCTAATTGCATAGGTTTGGAGAATGAAAATTCGAAAGAATTCGCAGATGA 649 Query 673 GTTGTTCGACGCATTGTGTAGGAGAAGAAGAATAATGGTTGATAAGATCAATCTTCAAGA 732 ||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 650 GTTGTTCGACGCAATGTGTAGGAGAAGAAGATTAATGGTTGATAAGATCAATCTTCAAGA 709 Query 733 ATTATACGAGTTTTGGTACCAAATTACAGACGAAAGCTTCGATTCTCGTCTTCAAATCTT 792 | |||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||| Sbjct 710 ACTATATGAGTTTTGGTACCAAATTACTGACGAAAGCTTCGATTCTCGTCTCCAAATCTT 769 Query 793 CTTCAACATGGTTAAAAATGGAGATGGTAGAATCACAGAGAATGAAGTAAAAGAGATTAT 852 |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| || Sbjct 770 CTTCGACATGGTTAAAAATGGAGATGGTCGAATCACAGAGAATGAAGTAAAAGAGATCAT 829 Query 853 TATACTAAGTGCATCGGCAAATAATCTATCGAGGTTGCGAGAACGAGCAGAGGAATATGC 912 ||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||| Sbjct 830 TATACTAAGTGCATCAGCAAATAATCTATTGAGGTTAAGAGAACGAGCAGAGGAATATGC 889 Query 913 CGCACTGATCATGGAAGAACTTGCACCAGATGGACTCTATTCTCAGTACATAGAGTTAAA 972 |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| Sbjct 890 AGCACTGATCATGGAAGAACTTGCACCGGATGGGCTCTATTCTCAGTACATAGAGTTAAA 949 Query 973 GGACCTAGAGATACTGCTACTAGAGAAGGACATATCTCATAGTTACAGCCTACCGTTCAG 1032 |||||||||||| || |||||||||||||||||||||||||||||||||| ||||||||| Sbjct 950 GGACCTAGAGATGCTACTACTAGAGAAGGACATATCTCATAGTTACAGCCAACCGTTCAG 1009 Query 1033 CCAGACGAGCCGAGCCTTAAGCCAGAACCTAAAGGATAGAAGATGGAGAATGAGCAGAAA 1092 ||||||||||||||||||||||| ||||||||||||| ||||||| |||| || || || Sbjct 1010 TCAGACGAGCCGAGCCTTAAGCCAAAACCTAAAGGATACAAGATGGGGAATAAGTAGGAA 1069 Query 1093 CTTGCTTTACTCTTTGCAAGATAATTGGAAGAGGATTTGGGTTTTGACATTGTGGTTTGT 1152 ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || Sbjct 1070 CTTGCTTTACTCTTTGCAAGACAATTGGAAGAGGATTTGGGTTTTGACATTGTGGTTAGT 1129 Query 1153 GATCATGGCCTGGTTATTTATGTGGAAATGCTATCAGTACAAACACAAAGACGCATTCCA 1212 |||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1130 GATCATGGGCTGGTTGTTTATGTGGAAATGCTATCAGTACAAACGCAAAGACGCATTCCA 1189 Query 1213 TGTAATGGGTTACTGCCTTGTCATGGCAAAAGGCGCAGCTGAGACACTGAAATTCAACAT 1272 ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| || Sbjct 1190 TGTAATGGGTTACTGCCTTGTCATGGCGAAAGGTGCAGCTGAGACACTGAAATTCAATAT 1249 Query 1273 GGCTCTTATTCTTTTGCCGGTCTGTAGAAATACCATCACCTATCTCAGATCCACCGCTTT 1332 ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1250 GGCTCTTATCCTTTTGCCGGTTTGTAGAAATACCATCACCTATCTCAGATCCACCGCTTT 1309 Query 1333 GTCCCACTCAGTGCCTTTCGATGACTGCATTAATTTTCACAAGACGATCTCTGTAGCAAT 1392 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1310 GTGCCACTCAGTGCCTTTCGATGACTGCATTAATTTTCACAAGACGATCTCTGTAGCAAT 1369 Query 1393 CATTAGTGCAATGCTTCTTCATGCAACCAGCCACCTCGCCTGTGACTTCCCAAGGATTCT 1452 ||||| ||||||||||||||||||| ||||||||||||| ||||||||||| |||||||| Sbjct 1370 CATTATTGCAATGCTTCTTCATGCATCCAGCCACCTCGCTTGTGACTTCCCGAGGATTCT 1429 Query 1453 AGCATCTACTGATACAGATTACAAAAGATACTTGGTTAAGTACTTTGGTGTGACCAGACC 1512 | |||||||||| || ||||||||||||||||||||||||||||||||| | |||||||| Sbjct 1430 AACATCTACTGAGACTGATTACAAAAGATACTTGGTTAAGTACTTTGGTATTACCAGACC 1489 Query 1513 CACATACTTTGGTTTGGTGAATACTCCTGTGGGAATCACTGGAATTATAATGGTTGCTTT 1572 ||||||||||| |||||||||| |||||| ||||||||||| |||||||||||||||| Sbjct 1490 CACATACTTTGACTTGGTGAATAGTCCTGTAGGAATCACTGGTTTTATAATGGTTGCTTT 1549 Query 1573 TATGTTAATTGCATTCACATTAGCCAGTAGAAGATGCAGGCGGAA-CTTAACTAAGTTGC 1631 |||| |||||||||||| |||||||||| |||||||||||||||| ||| |||||||||| Sbjct 1550 TATGGTAATTGCATTCATATTAGCCAGTCGAAGATGCAGGCGGAACCTT-ACTAAGTTGC 1608 Query 1632 CGAAGCCATTTGACAAACTAACCGGATATAATGCCTTCTGGTATTCACATCACTTACTTC 1691 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1609 CAAAGCCATTTGACAAACTAACCGGATATAATGCCTTCTGGTATTCACATCACTTACTTC 1668 Query 1692 TAACTGTTTACGTCCTTTTAGTCATCCACGGTGTTTCCCTCTATCTCGAGCATAAATGGT 1751 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1669 TAACTGTTTACGTCCTTTTAGTCATCCACGGTGTTTCCCTCTATCTCGAGCATAAATGGT 1728 Query 1752 ACCGCAAAACGGTATGGATGTATCTTGCTGTACCAGTTTTACTCTATGTTGGTGAGAGGA 1811 ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |||| Sbjct 1729 ACCGCAAAACGATATGGATGTATCTTGCTGTACCAGTTTTACTCTATATTGGTGAAAGGA 1788 Query 1812 TCTTTAGATTTTTCCGTTCCAGGCTTTACACAGTCGAAATCTGTAAGGTTGTAATTTATC 1871 || |||||||||| ||||||||||||||||| || |||||||| |||||||||||||||| Sbjct 1789 TCCTTAGATTTTTTCGTTCCAGGCTTTACACCGTTGAAATCTGCAAGGTTGTAATTTATC 1848 Query 1872 CCGGAAACGTTGTTGTGCTACGCATGTCTAAGCCTACATCATTTGATTACAAGAGTGGAC 1931 |||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |||| Sbjct 1849 CCGGAAACGTTGTTGTACTACGCATGACTAAGCCTACATCATTTGATTACAAGAGCGGAC 1908 Query 1932 AATATGTATTTGTTCAGTGTCCAT-CAGTATCAAAATTTGAGTGGCATCCATTTTCTATT 1990 |||||||||||||||||||||| | |||| |||||||||||||||||||||||||||||| Sbjct 1909 AATATGTATTTGTTCAGTGTCC-TGCAGTGTCAAAATTTGAGTGGCATCCATTTTCTATT 1967 Query 1991 ACTTCTTCCCCTGGAGATGATTATCTCAGCATTCACATTCGTCAGCGCGGTGATTGGACA 2050 || |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| Sbjct 1968 ACGTCTTCCCCTGGAGATGATTATCTCAGCATTCACATTCGCCAGCGTGGTGATTGGACA 2027 Query 2051 GAAGGGATTAAGAAGGCATTCTCAGTGGTATGTCATGCCCCTGAAGCTGGAAAAAGCGGA 2110 |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| Sbjct 2028 GAAGGGATTAAGAAGGCATTTTCAGTGGTATGTCAAGCCCCTGAAGCTGGAAAAAGCGGA 2087 Query 2111 CTTCTCAGAGCAGATGTACCAAACCAAAGAAGTTTTCCAGAGCTGTTGATAGATGGACCT 2170 |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| Sbjct 2088 CTTCTCAGAGCAGACGGACCAAACCAAAGAAGTTTTCCAGAGCTGTTGATAGATGGACCT 2147 Query 2171 TATGGCGCTCCAGCGCAAGACCATTGGAAGTATGATGTGGTATTACTGGTTGGCCTTGGA 2230 |||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| Sbjct 2148 TATGGCGCTCCAGCGCAAGACCATTGGAAGTATGATGTGGTACTACTCGTTGGCCTTGGA 2207 Query 2231 ATCGGCGCAACACCTTTCGTTAGCATTTTGAGAGATCTACTCAATAACATTATTAAGCAA 2290 |||||||||||||||||||||||||||||||||||||||||||| | |||| |||||||| Sbjct 2208 ATCGGCGCAACACCTTTCGTTAGCATTTTGAGAGATCTACTCAACACCATTGTTAAGCAA 2267 Query 2291 CAGGAACAAGCTGAATGCATCTCAGGTAGTTGTAGTAACAGCAACATCTCGTCGGATCAC 2350 || ||||||||||||||| ||||||||||||||||||||||||||||||| || |||||| Sbjct 2268 CAAGAACAAGCTGAATGCCTCTCAGGTAGTTGTAGTAACAGCAACATCTCATCTGATCAC 2327 Query 2351 AGTTTCAGTTGCTTAAACTCAGAAGCTGCG-AGTCGGATTCCGCAAACTCAACGGAAGAC 2409 |||||||||||||||||||| |||||| || ||||||||||| ||||||||||||||||| Sbjct 2328 AGTTTCAGTTGCTTAAACTCGGAAGCT-CGGAGTCGGATTCCCCAAACTCAACGGAAGAC 2386 Query 2410 GCTGAATACCAAGAATGCTTACTTTTACTGGGTAACACGAGAACAAGGCTCGTTCGATTG 2469 | ||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||| Sbjct 2387 GTTGAATACTAAGAACGCTTACTTTTATTGGGTAACACGAGAACAAGGCTCGTTCGATTG 2446 Query 2470 GTTCAAAGAAATCATGAACGAGATTGCTGATTCAGATAGAAAGGGTGTTATTGAGATGCA 2529 ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 2447 GTTCAAAGATATCATGAACGAAATTGCTGATTCAGATAGAAAGGGTGTTATTGAGATGCA 2506 Query 2530 CAACTACTTGACTAGCGTCTACGAAGAAGGAGATACTCGATCCAATCTTCTCACTATGAT 2589 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 2507 CAACTACTTGACTAGCGTCTACGAAGAAGGAGATACTCGATCCAATCTTCTCACCATGAT 2566 Query 2590 CCAAACGTTAAACCATGCCAAAAATGGCGTCGACATTTTTTCAGGAACCAAGGTAAGGAC 2649 ||||||| ||||||| || ||||||||||| | | ||| | | | Sbjct 2567 CCAAACGCTAAACCACGCTAAAAATGGCGT--A-A--------GGA-C-A---------C 2604 Query 2650 ACATTTTGGGAGGCCAAAATGGAAGAAAGTTTTATCAAAGATTAGCACCAAACATAGGAA 2709 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2605 A--TTTTGGGAGGCCAAAATGGAAGAAAGTTTTATCAAAGATTAGCACCAAACATAGGAA 2662 Query 2710 CGCAAGAATTGGAGTGTTCTATTGTGGAGTTCCAAGTTTGGGGAAGGAACTTTCAACACT 2769 |||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||| Sbjct 2663 CGCAAGAATTGGAGTGTTCTATTGTGGAGTACCGAGTTTGGGGAAGGAACTTTCTACACT 2722 Query 2770 CTGCCATGAATTTAACCAGACGGGAATTACCAGGTTCGATTTCCACAAAGAACAGTTCTA 2829 |||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| Sbjct 2723 CTGCCATGAATTTAACCAGACGGGAATTTCCAGGTTCGAGTTCCACAAAGAACAGTTCTA 2782 Query 2830 ACTGGTAAAAGGATTAATCCCCCACGATTATGGTTTTTTGAATGAATGAATCAATGTTCA 2889 ||| || | |||||||||||||||||||| ||||||||||||||||||||| Sbjct 2783 ACT---AA-----T----CCCCCACGATTATGGTTTTT-GAATGAATGAATCAATGTTCA 2829 Query 2890 TGTTCGTTCTCGTATCCTACTTGTTGTGTTTTCTTTT-CGTTTTGTGTATCACAAATACC 2948 ||||| | | |||||| |||||||||||||||||| |||||||||||||| || |||| Sbjct 2830 TGTTCATA-TA-TATCCTTCTTGTTGTGTTTTCTTTTTCGTTTTGTGTATCATAA-TACC 2886 Query 2949 AACTTTTAACCATTTCATCTAGAGTAGGACTGTtaaaaa 2987 ||||||||||||||||||||||| ||||||||||||||| Sbjct 2887 AACTTTTAACCATTTCATCTAGACTAGGACTGTTAAAAA 2925 Score = 189 bits (102), Expect = 1e-46 Identities = 180/214 (84%), Gaps = 20/214 (9%) Strand=Plus/Plus Query 3 AAATGTCAATGTCATTTTCCGGCGGGACTCACAACGATCGTTGGGGCTCCGATTT-AGCT 61 |||||||||||||||||||||||||||||||| ||||||||||||| |||||||| | || Sbjct 1 AAATGTCAATGTCATTTTCCGGCGGGACTCACGACGATCGTTGGGGTTCCGATTTGA-CT 59 Query 62 TCCGCCGGAGAATTCACCCAAAGCTTTCCATCCTTACCAGCAACATACTCACCCTCACcc 121 |||||||||||||| ||||||||||||||||| || |||||||| | | || ||||| Sbjct 60 TCCGCCGGAGAATTTACCCAAAGCTTTCCATCGTTTCCAGCAAC-T--T-AC--TCACC- 112 Query 122 tcctcctcctcctcctccGGCGAAGAGCTCCTAGAAGTAACAATCGAATTCCCAAGCGGC 181 | ||| | |||||||||||| ||||||||||||||||||||||||||||| Sbjct 113 T--TCCGAC---------GGCGAAGAGCTCGTAGAAGTAACAATCGAATTCCCAAGCGGC 161 Query 182 GTAATAATAAACATCGACTCCGTTACCGGAACCG 215 ||| || |||||||||| || |||||| | |||| Sbjct 162 GTACTATTAAACATCGAATCTGTTACCAGCACCG 195 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 118232120480 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5