BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G11240.1
Length=1458
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489959 jgi|Araly1|489959|fgenesh2_kg.6__3093__AT4G11240.1 1781 0.0
> Ahg489959 jgi|Araly1|489959|fgenesh2_kg.6__3093__AT4G11240.1
Length=1333
Score = 1781 bits (964), Expect = 0.0
Identities = 1171/1266 (92%), Gaps = 34/1266 (3%)
Strand=Plus/Plus
Query 1 AATTATTACCGCGTTTATTATAAAAGTTTCTAGGGTTTACGAAATTTGGGtctctctccc 60
||| |||||||||||||| | |||| |||||||||||||||||||||||| | |
Sbjct 1 AATAATTACCGCGTTTATGA-AAAA-TTTCTAGGGTTTACGAAATTTGGG-----GT--C 51
Query 61 tctctctacttaacgctctctgtatcttcttctcCGTCAACGATACGAACCCAGAGACGT 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 52 TCTCTCTACTTAACGCTCTCTGTATCTTCTTCTCCGTCAACGATACGAACCCAGAGACGC 111
Query 121 CGGCGGTTAAA-ACAATCGTCGGATCTCTCTGGATTCGTTAGACGAGAAGTTTCCGGTAT 179
||||||| ||| | ||||||||| ||||||||||||||| || |||||| |||||||| |
Sbjct 112 CGGCGGTGAAATA-AATCGTCGGTTCTCTCTGGATTCGTCAGGCGAGAATTTTCCGGTTT 170
Query 180 CTAATTTCTGTGCGTTAGAGAGAAA-TTA-GGGTTGTTGCTACGATGGATGAGACTTTAC 237
||||||| |||| | | |||| ||| || ||||||||||| ||||||| ||||||||||
Sbjct 171 CTAATTTGTGTGTG-T-GAGAAAAAGATAGGGGTTGTTGCTTCGATGGACGAGACTTTAC 228
Query 238 TTGACGATATAATACGACGGCTTTTGGCGACGAATAATGGAAGGACGGTGAAGCAAGCAC 297
| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 229 TCGACGATATAATACGGCGACTTTTGGCGACGAATAATGGAAGGACGGTGAAGCAAGCAC 288
Query 298 AGATTACTGAGACGGAGATACGTCAGCTATGTTTAGCTTCAAAAGAGGTTTTTCTCAGTC 357
||||||||||| |||||||||| ||||||||||||||||| || || |||||||||||||
Sbjct 289 AGATTACTGAGGCGGAGATACGGCAGCTATGTTTAGCTTCCAAGGAAGTTTTTCTCAGTC 348
Query 358 AGCCTAATCTCCTCGAGCTCGAGGCTCCTATCAAGATTTGCGGAGATGTTCATGGTCAGT 417
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 349 AGCCTAATCTCCTCGAGCTTGAGGCTCCTATCAAGATTTGCGGAGATGTTCATGGTCAGT 408
Query 418 TTCCAGACCTCTTGCGGTTGTTTGAGTATGGTGGTTATCCACCAGCTGCGAACTACTTGT 477
||||||| |||||||||||||||||||||||||| ||||| |||||||| || |||||||
Sbjct 409 TTCCAGATCTCTTGCGGTTGTTTGAGTATGGTGGCTATCCGCCAGCTGCAAATTACTTGT 468
Query 478 TTCTTGGGGATTATGTTGATCGTGGTAAGCAGAGCATAGAGACGATATGCCTTCTTCTTG 537
|||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 469 TTCTCGGGGACTATGTTGATCGTGGTAAGCAGAGCATAGAGACGATATGTCTTCTTCTTG 528
Query 538 CCTATAAGGTCAAATACAAGTTCAACTTCTTTCTTCTCAGAGGCAATCACGAATGTGCTT 597
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 529 CCTACAAGGTCAAATACAAGTTCAACTTCTTTCTTCTCAGAGGCAATCACGAGTGTGCTT 588
Query 598 CAATCAACCGTGTATATGGATTCTACGATGAATGCAAAAGAAGATATAATGTTCGCTTAT 657
||||||| ||||||||||||||||| |||||||||||| ||||||||||||| ||| |||
Sbjct 589 CAATCAATCGTGTATATGGATTCTATGATGAATGCAAACGAAGATATAATGTCCGCCTAT 648
Query 658 GGAAAACATTCACCGAGTGCTTCAACTGTCTGCCTGTTTCTGCTCTCATTGATGATAAGA 717
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 649 GGAAAACTTTCACTGAGTGCTTCAACTGTCTGCCTGTTTCTGCTCTCATTGATGATAAGA 708
Query 718 TCCTCTGCATGCATGGTGGACTATCGCCTGATATTAAGAGCTTAGATGACATCAGGAGAA 777
||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 709 TCCTCTGTATGCATGGTGGACTATCGCCTGATATTAAGAGCTTAGATGACATCAAGAGAA 768
Query 778 TTCCTCGTCCTATTGACGTTCCTGATCAGGGCATTCTTTGTGATTTGTTGTGGGCTGATC 837
|||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 769 TTCCTCGTCCTATTGACGTTCCTGATGAGGGCATTCTTTGTGATTTGTTATGGGCTGATC 828
Query 838 CTGACAGAGAGATTCAAGGCTGGGGGGAGAATGACAGAGGTGTCTCTTATACATTTGGGG 897
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 829 CTGACAGAGAGATTGAAGGCTGGGGGGAGAATGACAGAGGTGTCTCTTATACATTTGGGG 888
Query 898 CTGACAAAGTAGCTGAGTTCCTTCAAACTCATGACCTTGATCTTATATGCCGAGCTCATC 957
| |||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 889 CCGACAAAGTAGCTGAGTTCCTTCAAACTCATGACCTTGACCTTGTATGCCGAGCTCATC 948
Query 958 AGGTTGTAGAAGATGGATACGAGTTCTTTGC-AAAGAGACAACTAGTGACAATATTCTCT 1016
||||||||||||||||||| || |||||||| ||| |||||||| |||||||||||||||
Sbjct 949 AGGTTGTAGAAGATGGATATGAATTCTTTGCGAAA-AGACAACTGGTGACAATATTCTCT 1007
Query 1017 GCACCCAATTACTGTGGCGAGTTTGACAATGCTGGTGCATTGATGAGTGTTGATGATAGC 1076
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1008 GCACCCAATTACTGTGGCGAGTTTGACAATGCCGGCGCATTGATGAGTGTTGATGATAGC 1067
Query 1077 TTAACATGTTCATTCCAAATCCTTAAGGCATCTGAGAAGAAAGGAAGATTTGGATTCAAC 1136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1068 TTAACATGTTCATTCCAAATCCTTAAGGCATCTGAGAAGAAAGGAAGATTTGGATTCAAC 1127
Query 1137 AACAATGTTCCTAGACCAGGAACCCCACCTCATAAGGGTGGAAAAGGTCGTTAACTCGTC 1196
| | |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1128 AGCCATGTTCCTAGACCAGGAACCCCACCTCATAAGGGTGGAAAAGGTCGTTAA-TCA-- 1184
Query 1197 GTCGATGGGTTCAAGAAACGAGTGAAACCGACGGGTTCGAATTTTGTAAGGCAAACAGTT 1256
| | || || ||||||| |||| |||||||||||||| ||||||| |||||
Sbjct 1185 ----A-G-----AA-AA--GAGTGAAGCCGATGGGTTCGAATTTTGAAAGGCAA-CAGTT 1230
Query 1257 TGTTTT 1262
||||||
Sbjct 1231 TGTTTT 1236
Score = 113 bits (61), Expect = 3e-24
Identities = 73/78 (94%), Gaps = 4/78 (5%)
Strand=Plus/Plus
Query 1321 ttttGTAAAAATTGTGGAAGATGTTCACAGCATTTTCAACTGAAGAAAGTTGGGTT---T 1377
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1256 TTTTGTAAAAATTGTGGAAGATGTTCACAGCATTTTCAACTGAAGAAAGTTGGGTTGGGT 1315
Query 1378 T-ATACAACTAACCTTTT 1394
| ||||| ||||||||||
Sbjct 1316 TTATACATCTAACCTTTT 1333
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54545230840
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5