BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G11280.1
Length=1753
Score E
Sequences producing significant alignments: (Bits) Value
Ahg327275 jgi|Araly1|327275|fgenesh1_pm.C_scaffold_6002495 2399 0.0
Ahg492192 jgi|Araly1|492192|fgenesh2_kg.7__1625__AT4G26200.1 82.4 1e-14
> Ahg327275 jgi|Araly1|327275|fgenesh1_pm.C_scaffold_6002495
Length=1488
Score = 2399 bits (1299), Expect = 0.0
Identities = 1427/1490 (96%), Gaps = 4/1490 (0%)
Strand=Plus/Plus
Query 72 ATGGTGGCTTTTGCAACAGAGAAGAAGCAAGATCTGAATCTATTGTCTAA-AATCGCCTC 130
|||||| |||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 1 ATGGTGTCTTTTGCAACAGAGAAGAAGCAAGATCTGAATCTATTGTC-AAGAATCGCCTC 59
Query 131 CGGTGACGGTCACGGCGAGAATTCCTCTTATTTCGATGGTTGGAAAGCTTATGAAGAAAA 190
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 60 CGGTGACGGTCACGGCGAGAATTCATCTTATTTCGATGGTTGGAAAGCTTATGAAGAAAA 119
Query 191 CCCATTTCACCCAATTGATAGACCTGACGGAGTTATTCAAATGGGTCTCGCTGAAAATCA 250
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 120 CCCATTTCACCCAATTGATAGACCTGATGGAGTTATTCAAATGGGTCTCGCTGAAAATCA 179
Query 251 GCTTTGTGGAGATTTGATGCGTAAATGGGTTTTAAAACATCCAGAAGCTTCGATTTGTAC 310
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 GCTTTGTGGAGATTTGATGCGTAAATGGGTTTTAAAACATCCAGAAGCTTCGATTTGTAC 239
Query 311 ATCAGAAGGTGTGAATCAATTCAGTGACATTGCCATTTTTCAAGATTATCATGGCTTGCC 370
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 240 ATCAGAAGGTGTGAATCAATTCAGTGACATTGCAATTTTTCAGGATTATCATGGCTTGCC 299
Query 371 TGAATTCAGACAAGCTGTAGCGAAATTTATGGAGAAGACTAGAAATAACAAAGTTAAGTT 430
| ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 300 TAAATTCAGACAAGCAGTAGCGAAATTTATGGAGAAGACAAGAAATAACAAAGTTAAGTT 359
Query 431 TGATCCTGACCGGATTGTTATGAGCGGCGGCGCAACCGGAGCACACGAGACGGTTGCTTT 490
||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||
Sbjct 360 TGATCCTGACCGGATTGTTATGAGCGGCGGCGCTACGGGCGCACACGAGACGGTTGCTTT 419
Query 491 CTGTTTAGCTAATCCCGGCGATGGTTTCTTAGTTCCAACCCCTTATTATCCAGGGTTTGA 550
|||||||||||||||||| || |||||||||||||| || ||||||||||||||||||||
Sbjct 420 CTGTTTAGCTAATCCCGGTGACGGTTTCTTAGTTCCGACTCCTTATTATCCAGGGTTTGA 479
Query 551 TAGAGATTTGAGATGGAGAACCGGAGTGAATCTTGTACCGGTTACTTGTCATAGCTCTAA 610
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 480 TAGAGATTTGAGATGGAGAACCGGAGTGAATCTTGTACCGGTTACTTGTCATAGCTCTGA 539
Query 611 TGGGTTCAAGATTACGGTGGAAGCCTTGGAAGCTGCTTACGAAAACGCGAGAAAATCGAA 670
|||||| |||||||||||||||||||||||||||||||| ||||| ||||| ||||||||
Sbjct 540 TGGGTTTAAGATTACGGTGGAAGCCTTGGAAGCTGCTTATGAAAATGCGAGGAAATCGAA 599
Query 671 TATTCCGGTTAAGGGTTTACTTGTAACCAATCCTTCAAACCCGCTTGGTACGACGTTAGA 730
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 600 TATTCCGGTTAAGGGTTTACTTGTAACCAATCCTTCGAATCCGCTTGGTACGACGTTAGA 659
Query 731 CCGGGAATGTTTGAAGTCTCTTGTTAACTTCACTAATGACAAAGGGATTCATCTTATTGC 790
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 CCGGGAATGTTTGAAGTCTCTTGTTAACTTCACTAATGACAAAGGGATTCATCTTATTGC 719
Query 791 TGATGAGATTTATGCTGCTACTACTTTTGGTCAATCCGAGTTCATAAGTGTTGCGGAAGT 850
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 720 TGATGAGATTTATGCTGCTACTACTTTTGGTCAATCCGAGTTTATAAGCGTTGCGGAAGT 779
Query 851 AATCGAGGAGATCGAAGATTGTAACCGCGATTTGATACATATTGTGTATAGTCTATCTAA 910
|| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 780 GATTGAGGAGATCGAGGATTGTAACCGCGATTTGATCCATATTGTGTATAGTCTATCTAA 839
Query 911 AGATATGGGTCT-GCCTGGTTTAAGAGTTGGTATAGTATACTCTTACAATGACAGGGTGG 969
||||||||| || |||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 840 AGATATGGG-CTTGCCTGGTTTAAGAGTTGGTATAGTGTACTCTTACAATGACCGGGTGG 898
Query 970 TTCAGATCGCAAGGAAAATGTCGAGTTTCGGTCTTGTTTCGTCACAAACGCAGCATTTGA 1029
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 899 TTCAGATCGCAAGGAAAATGTCGAGTTTTGGTCTTGTTTCGTCGCAAACGCAGCATTTGA 958
Query 1030 TCGCTAAAATGTTATCCGATGAAGAGTTTGTAGACGAGTTTATCCGCGAGAGCAAATTGC 1089
| |||||||||||||||||||||| |||||||||||||| ||| |||||||||||||||
Sbjct 959 TTTCTAAAATGTTATCCGATGAAGACTTTGTAGACGAGTTCATCTGCGAGAGCAAATTGC 1018
Query 1090 GGTTAGCTGCAAGGCACGCTGAGATAACCACCGGTTTAGATGGTTTAGGGATTGGTTGGT 1149
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 1019 GGTTAGCTGCAAGGCACGCGGAGATAACCACCGGTTTAGATGGTTTAGGCATTGGTTGGT 1078
Query 1150 TAAAGGCCAAAGCCGGTTTGTTCTTGTGGATGGATTTAAGAAATCTTTTGAAGACAGCAA 1209
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1079 TAAAGGCCAAAGCCGGTTTGTTCTTGTGGATGGATTTAAGAAATCTTTTGAAGACAGCTA 1138
Query 1210 CGTTTGATTCGGAAACCGAACTATGGCGTGTGATTGTTCACCAAGTGAAGCTCAACGTGT 1269
| |||||||||||||||||||||||||| || ||||| |||||||||||||| || ||||
Sbjct 1139 CATTTGATTCGGAAACCGAACTATGGCGCGTAATTGTCCACCAAGTGAAGCTGAATGTGT 1198
Query 1270 CTCCAGGCGGTTCGTTCCATTGCCATGAACCGGGATGGTTTAGAGTATGTTTTGCGAATA 1329
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 1199 CTCCTGGCGGTTCGTTCCATTGCCACGAACCGGGATGGTTTAGAGTATGTTTTGCAAATA 1258
Query 1330 TGGACCATAAGACGATGGAGACAGCTCTAGAGAGGATTAGAGTGTTCACTAGCCAACTTG 1389
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1259 TGGACCACAAGACGATGGAGACGGCTCTAGAGAGGATTAGAGTGTTCACTAGCCAACTTG 1318
Query 1390 AGGAGGAGACTAAACCGATGGCTGCAACAACTATGATGGCTAAAAAGAAGAAGAAGTGTT 1449
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 1319 AGGAGGAGACTAAACCGATGGCTGCAACAACAATGATGGCTAAGAAGAAGAAGAAGTGTT 1378
Query 1450 GGCAGAGTAACCTCAGGTTAAGCTTTAGTGACACGAGGCGGTTCGATGATGGCTTCTTCT 1509
|||| ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1379 GGCAAAGTAACCTCCGGTTAAGCTTTAGCGACACGAGGCGGTTCGATGATGGCTTCTTCT 1438
Query 1510 CGCCTCATTCGCCTGTGCCGCCTTCTCCGCTAGTCCGTGCACAGACTTAA 1559
|||||||||| || ||||||||||||||||| ||||||||||||||||||
Sbjct 1439 CGCCTCATTCACCGGTGCCGCCTTCTCCGCTGGTCCGTGCACAGACTTAA 1488
> Ahg492192 jgi|Araly1|492192|fgenesh2_kg.7__1625__AT4G26200.1
Length=1575
Score = 82.4 bits (44), Expect = 1e-14
Identities = 65/75 (87%), Gaps = 1/75 (1%)
Strand=Plus/Plus
Query 516 TTCTTAGTTCCAACCCCTTATTATCCAGGGTTTGATAGAGATTTGAGATGGAGAACCGGA 575
||| ||||||| || || ||||||||||| || |||||||||||||||||||||||||||
Sbjct 458 TTC-TAGTTCCCACACCGTATTATCCAGGATTCGATAGAGATTTGAGATGGAGAACCGGA 516
Query 576 GTGAATCTTGTACCG 590
|| || | ||||||
Sbjct 517 GTAAAAATAGTACCG 531
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65781853115
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5