BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G11290.1
Length=1206
Score E
Sequences producing significant alignments: (Bits) Value
Ahg942980 jgi|Araly1|942980|scaffold_603524.1 1528 0.0
> Ahg942980 jgi|Araly1|942980|scaffold_603524.1
Length=1027
Score = 1528 bits (827), Expect = 0.0
Identities = 961/1027 (94%), Gaps = 4/1027 (0%)
Strand=Plus/Plus
Query 19 TTTTCTAAGTGTCTCATA-AAAAATGACGAGATTCGGATTAGCTCTT-T--TGATGATTC 74
||||||||||||||| || ||||||| ||| |||||| || |||||| | |||||||||
Sbjct 1 TTTTCTAAGTGTCTCGTATAAAAATGGCGAAATTCGGGTTGGCTCTTGTGATGATGATTC 60
Query 75 TTGTGATTCAAGGGCTTGTGACCTTTTCAGAAGCACAATTGAAGATGGGATTCTACGACC 134
|||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTGTGATTCAAGGGTTTGTGAGCTTTTCAGAAGCACAATTGAAGATGGGATTCTACGACC 120
Query 135 AAACGTGCCCTTACGCAGAGAAGATCGTACAAGATGTTGTCAACCAACATATAAACAATG 194
|||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 121 AAACTTGCCCTTACGCAGAGAAGATTGTACAAGATGTTGTCAACCAACATATCCACAATG 180
Query 195 CACCCTCTTTGGCTGCTGGCCTAATTAGGATGCATTTTCATGACTGCTTCGTTCGGGGTT 254
||||||||||||||||||| || |||||||||||||||||||| |||||||| |||||||
Sbjct 181 CACCCTCTTTGGCTGCTGGGCTTATTAGGATGCATTTTCATGATTGCTTCGTGCGGGGTT 240
Query 255 GTGATGGTTCCATCTTGATCAACGCGACATCGAGCAACCAACAAGTGGAGAAGCTTGCTC 314
| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 241 GCGATGGTTCGATCTTGATCAACGCGACATCGAGCAACCAACAAGTCGAGAAGCTTGCTC 300
Query 315 CTCCGAATCTAACTGTGAGAGGTTTCGATTTTATCGATAAAGTAAAGTCTGCTCTAGAAT 374
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 301 CTCCGAATCTAACTGTTAGAGGTTTCGATTTCATCGATAAAGTAAAGTCTGCTCTAGAAT 360
Query 375 CAAAGTGCCCTGGAATCGTCTCTTGCGCTGATATCATCACACTTGCTACTAGAGACTCTA 434
||||||| |||||||||||||| |||||||||||||| || || ||||||||||||||||
Sbjct 361 CAAAGTGTCCTGGAATCGTCTCCTGCGCTGATATCATTACCCTCGCTACTAGAGACTCTA 420
Query 435 TTGTTGCTATTGGTGGACCGACATGGAACGTTCCAACGGGGCGCAGAGACGGACGTATCT 494
||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 421 TTGTTGCAATTGGTGGACCGACATGGAATGTTCCAACGGGACGCAGAGACGGACGTATCT 480
Query 495 CTAACTTTGCCGAGGCTATGAACAATATTCCTCCTCCTTTCGGAAACTTCACGACTCTGA 554
|||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| |
Sbjct 481 CTAACTTTGCCGAGGCTAGGAACAATATTCCACCTCCTTTCGGAAACTTCACGACTCTTA 540
Query 555 TAACCCTCTTTGGAAACCAAGGACTTGATGTTAAAGACCTCGTCTTGTTATCCGGTGCCC 614
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 541 TAACCCTCTTTGGAAACCAAGGACTTGATGTTAAAGACCTTGTCTTGTTATCCGGTGCGC 600
Query 615 ACACGATTGGAGTGTCTCATTGCTCCTCCTTCTCAAACCGTCTCTTCAATTTCACCGGCG 674
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 601 ACACTATTGGAGTGTCTCATTGCTCCTCCTTCTCAAACCGTCTCTTCAATTTTACCGGCG 660
Query 675 TTGGAGACCAAGATCCATCGCTCGACAGCGAATATGCCGACAATCTCAAATCACGGAGAT 734
|||||||||||||||| || | ||||||||||||| |||||||||||| ||||||||||
Sbjct 661 TTGGAGACCAAGATCCGTCAATGGACAGCGAATATGTCGACAATCTCAAGTCACGGAGAT 720
Query 735 GTTTATCTATCGCTGACAATACCACAAAAGTCGAAATGGATCCCGGTAGTCGAAACACCT 794
|||| || |||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 721 GTTTGGCTCTCGCCGACAATACCACAACGGTCGAAATGGATCCCGGTAGTCGAAACACCT 780
Query 795 TCGATCTTAGCTACTACCGTCTTGTCCTAAAACGTCGTGGACTTTTTGAGTCTGACGCTG 854
|||||||||||||||||||||| || || ||||||||||||||||| |||||||||||||
Sbjct 781 TCGATCTTAGCTACTACCGTCTGGTGCTGAAACGTCGTGGACTTTTCGAGTCTGACGCTG 840
Query 855 CATTGACTATGAATCCTGCGGCATTGGCTCAGGTCAAACGCTTCGCCGGAGGATCGGAGC 914
|||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 841 CATTGACTATGAATCCCGCGGCATTGGCTCAGGTCAAACGCTTTTCCGGAGGATCGGAGC 900
Query 915 AAGAGTTCTTTGCTGAGTTCTCCAACTCCATGGAGAAAATGGGAAGGATTGGGGTCAAAA 974
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 901 AAGAGTTCTTTGCTGAGTTCTCGAAGTCCATGGAGAAAATGGGAAGGATTGGGGTCAAAA 960
Query 975 CAGGGTCGGATGGGGAGATTCGAAGAACATGTGCATTTGTTAACTAAAAGTgtttcttac 1034
| ||||||||||||||||| || |||||||||||||||||||| || |||||||||| ||
Sbjct 961 CCGGGTCGGATGGGGAGATCCGGAGAACATGTGCATTTGTTAATTAGAAGTGTTTCTAAC 1020
Query 1035 tttttct 1041
|||||||
Sbjct 1021 TTTTTCT 1027
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45023164977
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5