BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G11300.1
Length=1391
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489963 jgi|Araly1|489963|fgenesh2_kg.6__3097__AT4G11300.1 1840 0.0
> Ahg489963 jgi|Araly1|489963|fgenesh2_kg.6__3097__AT4G11300.1
Length=1284
Score = 1840 bits (996), Expect = 0.0
Identities = 1224/1326 (92%), Gaps = 48/1326 (4%)
Strand=Plus/Plus
Query 19 TTTATCAAAATTCTCTCTTTTTCCCA-AAAAGATTCACAAATTTGTTGTAGTCTCGCCG- 76
|||||||||||||||||||||||||| ||||||||| ||||||||||||| |||| |||
Sbjct 1 TTTATCAAAATTCTCTCTTTTTCCCACAAAAGATTCTCAAATTTGTTGTAATCTCTCCGT 60
Query 77 TTAAGATGGCGCCGGCGACGGAGCATCAGAGCTCGTTCTTGAGTCGACTAAGCCGTCGCA 136
|||| |||||||||||||||||||||||||| ||||||||||||||| | ||||||||||
Sbjct 61 TTAA-ATGGCGCCGGCGACGGAGCATCAGAGTTCGTTCTTGAGTCGAATCAGCCGTCGCA 119
Query 137 ATCAAGTGGTTTCCATGGAGGTTAACCACGAGCAAGAGCAAGAAGAACTCGAAGATTTTC 196
||| || ||||||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 120 GTCAGGTTGTTTCCATGGAGGTTAATCACGAGCAAGAGCTCGAAGAACTCGAAGATTTTC 179
Query 197 AAAAACACGTAGCTGAACGTTTCGCGGAGCTCTTACCACCGTCGGATTCGCCGGAATCTT 256
| |||||||||||||| |||||| | |||||||||||||||||||||||||||||||||
Sbjct 180 AGAAACACGTAGCTGAGCGTTTCACCGAGCTCTTACCACCGTCGGATTCGCCGGAATCTC 239
Query 257 ACCCGATTCTTTCGATCCAGTGGCTAAGGAAGCTTCTTGATGTTTTCATGTCTATAGAAT 316
||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 240 ACCCGATTCTTTCGATCCAGTGGCTGAGGAAGCTTCTTGATGCTTTCATGTCTATAGAAT 299
Query 317 CGGAGTTTCATTCGGTTTTAACATCGAATCCGTCTCAGATCTCGAAACCTCCGTTGGATA 376
||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 300 CGGAGTTTCGTTCGGTTTTAACAACGAATCCGTCTCAGATCTCGAAACCTCCGTTGGATA 359
Query 377 AGCTTGTACCGGAGATGCTTGATCGGATTGTTAAAGCTCTTGATATTTGTACCGCCGTAG 436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 AGCTTGTACCGGAGATGCTTGATCGGATTGTTAAAGCTCTTGATATTTGTACCGCCGTAG 419
Query 437 TCAACGGCGTTGACTCAGTCAGACAAATCCAACGTTGTGCGGAGATTGCTGTTACGGCGT 496
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 420 TCAACGGCGTTGACTCAGTCAGACAAATCCAGCGTTGTGCGGAGATTGCTGTTACGGCGT 479
Query 497 TGAAACAAACGCCGTTAAGTGACGGAAGCGTTAGGAGAGCTAAAAGAGCTCTTACAAGCC 556
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 480 TGAAACAAACGCCGTTAAGTGACGGAAGCGTTAGGAGAGCTAAACGGGCTCTTACAAGCC 539
Query 557 TCCTCGCCGCTTTAAACGCTGATAAAAACAGCGGTAGCAGCGGCGGAGGAAGTGGTAGGA 616
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 540 TCCTCGCCGCTTTAAACGCCGATAAAAATAGCGGTAGCAGCGGCGGAGGAAGTGGTAGGA 599
Query 617 GGTCATCGACGGATCAGTGGTCGTCGTTTGGTCGACGTAGCGGCGGAAGCAGCggaggag 676
||||||||||||| |||||||||||||||||||||||||||||||||||| | | |||||
Sbjct 600 GGTCATCGACGGAGCAGTGGTCGTCGTTTGGTCGACGTAGCGGCGGAAGC-G-G-AGGAG 656
Query 677 gaggaggaggagCAGGGTGTGTGAGTAAGAATTGGTCAGCGGCGAAGCAGATTCAAGCAA 736
|||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 GAGG-G-----------TGTGTGAGTAAGAATTGGTCAGCGGCGAAGCAGATTCAAGCAA 704
Query 737 TGACGGCGAATCTTGTAGCGCCACGTGGAGGAGAGGCGTCGCCGATGTATATAATGAGTA 796
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 705 TGACGGCGAATCTCGTAGCGCCACGTGGCGGAGAGGCGTCGCCGATGTATATAATGAGTA 764
Query 797 GTGTGATGGTAATGGTGATGTGGACGTTAGTTGTAGCGGTTCCTTGTCAGACAAGTAACG 856
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 765 GTGTGATGGTAATGGTGATGTGGACGTTAGTTGTAGCGGTTCCTTGTCAAACAAGTAACG 824
Query 857 GCTTAATGGTTCATGTACCGCTGCCGAAGAATCAGGTATGGGCTAACGCGGCCGTGAGTA 916
|||||||||||||| ||||| |||||||||||||||| ||||||| ||| |||||||| |
Sbjct 825 GCTTAATGGTTCATTTACCGTTGCCGAAGAATCAGGTTTGGGCTAGCGCCGCCGTGAGCA 884
Query 917 TCTCGGAGAGGGTCGGAGAAGAGATGAAACGGAAGGAGACGCG-TGGTGGTGGACTGATG 975
||||||||||| ||||||||||||||||||||||||||||||| || |||||| |||||
Sbjct 885 TCTCGGAGAGGATCGGAGAAGAGATGAAACGGAAGGAGACGCGGTGC-GGTGGATTGATG 943
Query 976 GAGGAGATGCAGAGGATGGAGAGGATCGGGTTGAAGCTGATGGAGTTCAGTGAAGGGTTT 1035
|||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 944 GAGGAGATGCAGAGGATGGAGAGGATTGGGTTGAAGATGATGGAGTTCAGTGAAGGGTTT 1003
Query 1036 AGGTTTAATGGGGAGGAGGATGTGGTGGCGGAAGTGGCGGAGATGGAGGAGATTTGCCGG 1095
|||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 1004 AGGTTTAATGGGGAGGAGGATGTGACGGCGGAAGTGGCGGAGATGGAGGAGATATGCCGG 1063
Query 1096 AAAATGGAAGATGGGCTTGAGGGGTTACAGAGAAGAGTTAGAGAAGTGTTTCATAGGTTG 1155
|||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |||
Sbjct 1064 AAAATGGAAGATGGGCTTGAAGGGTTACAAAGAAGAGTTAGAGAAGTGTTTCATAGATTG 1123
Query 1156 GTGAAAAGCAGAAGTGAGATACTTGAAGTGATTGATCACTGATTGTAATCTTTTAACTTT 1215
|||||||||||||||||||| ||||||||||||||||||||||||||||||| || | |
Sbjct 1124 GTGAAAAGCAGAAGTGAGATTCTTGAAGTGATTGATCACTGATTGTAATCTT--AA-TCT 1180
Query 1216 GTTGTTGTGAAAATTTAATCTTTGAGTTAACTCTTTTGATTAAGAAAAGAGAACAAATTA 1275
||| || || | | | || | ||||| | |||||||| | ||||||
Sbjct 1181 -TTGA-GT-AAC-TCT--T-TT-G-GTTAA--------A----GAAAAGAGTA-AAATTA 1218
Query 1276 CAGGTTTTT-ATTGTTTTATTTATG--TGATAATCTTTGATGTATATAAATTACAATTCG 1332
||||||||| ||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 1219 CAGGTTTTTGATTGTTTTATTTATGAATGATAATCTTTGATGTATATAAATTACAGTTCG 1278
Query 1333 TAATTA 1338
||||||
Sbjct 1279 TAATTA 1284
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51993184425
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5